Susd2 (sushi domain containing 2) - Rat Genome Database

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Gene: Susd2 (sushi domain containing 2) Rattus norvegicus
Analyze
Symbol: Susd2
Name: sushi domain containing 2
RGD ID: 1308595
Description: Predicted to be involved in negative regulation of cell cycle G1/S phase transition and negative regulation of cell division. Predicted to be located in membrane. Predicted to be active in extracellular space. Orthologous to human SUSD2 (sushi domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC294335; MGC189067; sushi domain-containing protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,016,960 - 13,024,264 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2013,016,907 - 13,024,264 (+)EnsemblGRCr8
mRatBN7.22013,017,516 - 13,024,820 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,017,477 - 13,024,903 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2013,724,061 - 13,731,487 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02013,085,008 - 13,092,434 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02013,557,212 - 13,564,648 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02013,965,098 - 13,972,547 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2013,965,121 - 13,972,547 (+)Ensemblrn6Rnor6.0
Rnor_5.02016,153,336 - 16,160,769 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42013,435,257 - 13,442,683 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2014,506,101 - 14,513,451 (+)NCBICelera
RGSC_v3.12013,436,129 - 13,442,834 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
epilepsy  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
beta-damascenone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
cefaloridine  (EXP)
chlormequat chloride  (EXP)
chlorpyrifos  (EXP)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) chloride  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diisononyl phthalate  (ISO)
dimethylarsinic acid  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
Evodiamine  (ISO)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
glyphosate  (EXP,ISO)
imidacloprid  (EXP)
inulin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead nitrate  (ISO)
lipopolysaccharide  (ISO)
mercury atom  (ISO)
mercury dichloride  (ISO)
mercury(0)  (ISO)
nickel atom  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorobutyric acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
propanal  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-nitrosoglutathione  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
triptonide  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19056867   PMID:23131994   PMID:23376485   PMID:23533145   PMID:25351403   PMID:25724483  


Genomics

Comparative Map Data
Susd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82013,016,960 - 13,024,264 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2013,016,907 - 13,024,264 (+)EnsemblGRCr8
mRatBN7.22013,017,516 - 13,024,820 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2013,017,477 - 13,024,903 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2013,724,061 - 13,731,487 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02013,085,008 - 13,092,434 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02013,557,212 - 13,564,648 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02013,965,098 - 13,972,547 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2013,965,121 - 13,972,547 (+)Ensemblrn6Rnor6.0
Rnor_5.02016,153,336 - 16,160,769 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42013,435,257 - 13,442,683 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2014,506,101 - 14,513,451 (+)NCBICelera
RGSC_v3.12013,436,129 - 13,442,834 (-)NCBI
Cytogenetic Map20p12NCBI
SUSD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382224,181,487 - 24,189,106 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2224,181,481 - 24,189,111 (+)Ensemblhg38GRCh38
GRCh372224,577,455 - 24,585,074 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362222,907,444 - 22,915,074 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342222,901,997 - 22,909,628NCBI
Celera228,377,843 - 8,385,473 (+)NCBICelera
Cytogenetic Map22q11.23NCBI
HuRef227,526,554 - 7,534,184 (+)NCBIHuRef
CHM1_12224,536,185 - 24,543,815 (+)NCBICHM1_1
T2T-CHM13v2.02224,643,101 - 24,650,720 (+)NCBIT2T-CHM13v2.0
Susd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391075,472,453 - 75,479,842 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1075,472,540 - 75,479,842 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381075,636,619 - 75,644,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1075,636,706 - 75,644,008 (-)Ensemblmm10GRCm38
MGSCv371075,099,364 - 75,106,753 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361075,080,339 - 75,087,705 (-)NCBIMGSCv36mm8
Celera1076,681,312 - 76,688,702 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.56NCBI
Susd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,147,783 - 8,159,086 (-)Ensembl
ChiLan1.0NW_0049554558,151,199 - 8,159,018 (-)NCBIChiLan1.0ChiLan1.0
SUSD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22333,966,460 - 33,974,128 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12236,700,215 - 36,707,858 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0224,987,563 - 4,995,242 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12223,073,387 - 23,081,082 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2223,073,481 - 23,080,411 (+)EnsemblpanPan2panpan1.1
SUSD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12628,356,563 - 28,363,843 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2628,356,193 - 28,362,442 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2627,430,929 - 27,438,209 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02629,760,573 - 29,767,853 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2629,760,573 - 29,767,827 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12627,844,557 - 27,851,844 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02627,461,067 - 27,468,347 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02628,451,211 - 28,458,495 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Susd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118141,866,738 - 141,876,951 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936619875,042 - 887,344 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936619878,737 - 887,319 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUSD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1449,674,141 - 49,683,695 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11449,671,856 - 49,683,889 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,113,830 - 53,125,708 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUSD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1197,289,836 - 7,299,518 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl197,291,908 - 7,299,542 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366610062,566 - 70,336 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Susd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474710,099,806 - 10,107,935 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474710,100,191 - 10,107,914 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Susd2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11811,804,661 - 11,812,011 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Susd2
41 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:76
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000066773
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1581577Pur15Proteinuria QTL 154.380.0002urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804392015089182Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 156 91 90 59 91 59 6 355 191 11 135 81 92 31 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000066773   ⟹   ENSRNOP00000062972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2013,017,477 - 13,024,903 (+)Ensembl
Rnor_6.0 Ensembl2013,965,121 - 13,972,547 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079996   ⟹   ENSRNOP00000071546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2013,016,907 - 13,024,262 (+)Ensembl
mRatBN7.2 Ensembl2013,017,477 - 13,024,820 (+)Ensembl
Rnor_6.0 Ensembl2013,965,162 - 13,972,239 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089005   ⟹   ENSRNOP00000073257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2013,017,477 - 13,024,820 (+)Ensembl
Rnor_6.0 Ensembl2013,965,121 - 13,972,464 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2013,969,226 - 13,970,180 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2013,969,262 - 13,969,735 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2013,968,377 - 13,968,923 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101808   ⟹   ENSRNOP00000080032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2013,016,997 - 13,024,264 (+)Ensembl
mRatBN7.2 Ensembl2013,017,553 - 13,024,820 (+)Ensembl
RefSeq Acc Id: NM_001414913   ⟹   NP_001401842
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82013,016,960 - 13,024,264 (+)NCBI
mRatBN7.22013,017,516 - 13,024,820 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001401842 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI68843 (Get FASTA)   NCBI Sequence Viewer  
  EDL97196 (Get FASTA)   NCBI Sequence Viewer  
  EDL97197 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071546
  ENSRNOP00000071546.2
  ENSRNOP00000080032.1
Ensembl Acc Id: ENSRNOP00000073257   ⟸   ENSRNOT00000089005
Ensembl Acc Id: ENSRNOP00000071546   ⟸   ENSRNOT00000079996
Ensembl Acc Id: ENSRNOP00000062972   ⟸   ENSRNOT00000066773
Ensembl Acc Id: ENSRNOP00000080032   ⟸   ENSRNOT00000101808
RefSeq Acc Id: NP_001401842   ⟸   NM_001414913
- Peptide Label: precursor
- UniProtKB: A0A0G2K0Q8 (UniProtKB/TrEMBL),   A6JKH9 (UniProtKB/TrEMBL),   D3ZEV8 (UniProtKB/TrEMBL)
Protein Domains
AMOP   SMB   Sushi   VWFD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K0Q8-F1-model_v2 AlphaFold A0A0G2K0Q8 1-825 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701538
Promoter ID:EPDNEW_R12062
Type:multiple initiation site
Name:Susd2_1
Description:sushi domain containing 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02013,965,160 - 13,965,220EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308595 AgrOrtholog
BioCyc Gene G2FUF-4153 BioCyc
Ensembl Genes ENSRNOG00000033389 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000079996 ENTREZGENE
  ENSRNOT00000079996.4 UniProtKB/TrEMBL
  ENSRNOT00000101808.2 UniProtKB/TrEMBL
Gene3D-CATH 4.10.410.20 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/TrEMBL
InterPro AMOP UniProtKB/TrEMBL
  C8-3_MUC4 UniProtKB/TrEMBL
  Epithelial_Barrier/Signaling UniProtKB/TrEMBL
  Somatomedin_B-like_dom UniProtKB/TrEMBL
  Somatomedin_B_dom UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP UniProtKB/TrEMBL
  VWF_type-D UniProtKB/TrEMBL
NCBI Gene 294335 ENTREZGENE
PANTHER MUCIN 4-RELATED UniProtKB/TrEMBL
  SUSHI DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam AMOP UniProtKB/TrEMBL
  C8-3_MUC4 UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
PhenoGen Susd2 PhenoGen
PROSITE AMOP UniProtKB/TrEMBL
  SMB_1 UniProtKB/TrEMBL
  SMB_2 UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
  VWFD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033389 RatGTEx
SMART AMOP UniProtKB/TrEMBL
  CCP UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
Superfamily-SCOP Complement_control_module UniProtKB/TrEMBL
  SSF90188 UniProtKB/TrEMBL
UniProt A0A0G2K0Q8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZP68_RAT UniProtKB/TrEMBL
  A6JKH9 ENTREZGENE, UniProtKB/TrEMBL
  B5DEX6_RAT UniProtKB/TrEMBL
  D3ZEV8 ENTREZGENE
UniProt Secondary A0A0G2K518 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Susd2  sushi domain containing 2   Susd2_predicted  sushi domain containing 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Susd2_predicted  sushi domain containing 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED