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Gene: Drc8 (dynein regulatory complex subunit 8) Rattus norvegicus

Analyze

Symbol:

Drc8 (Ensembl: Efcab2)

Name:

dynein regulatory complex subunit 8 (Ensembl:EF-hand calcium binding domain 2)

RGD ID:

1308593

Description:

Predicted to enable calcium ion binding activity. Predicted to be located in organelle. Predicted to be active in sperm principal piece. Orthologous to human EFCAB2 (EF-hand calcium binding domain 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

dynein regulatory complex protein 8; EF-hand calcium binding domain 2; EF-hand calcium-binding domain-containing protein 2; EF-hand calcium-binding domain-containing protein 2-like; Efcab2; LOC102550369; LOC289280; RGD1308593; similar to RIKEN cDNA 1700073K01

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DRC8 (dynein regulatory complex subunit 8)	HGNC	Ensembl, HomoloGene, NCBI, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Efcab2 (EF-hand calcium binding domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Efcab2 (EF-hand calcium binding domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EFCAB2 (EF-hand calcium binding domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EFCAB2 (EF-hand calcium binding domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Efcab2 (EF-hand calcium binding domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EFCAB2 (EF-hand calcium binding domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DRC8 (dynein regulatory complex subunit 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Efcab2 (EF-hand calcium binding domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Efcab2 (EF-hand calcium binding domain 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RAB7B (RAB7B, member RAS oncogene family)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Efcab2 (EF-hand calcium binding domain 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Efcab2 (EF-hand calcium binding domain 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DRC8 (dynein regulatory complex subunit 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	efcab2 (EF-hand calcium binding domain 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	efcab2 (EF-hand calcium binding domain 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG11041	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG11041	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9406	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9406	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	efcab2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	efcab2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	92,683,182 - 92,769,939 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	92,684,086 - 92,782,558 (+)	Ensembl				GRCr8
mRatBN7.2	13	90,152,002 - 90,237,918 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	90,152,185 - 90,238,218 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	92,657,438 - 92,743,164 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	94,057,585 - 94,143,324 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	91,239,272 - 91,324,914 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	96,303,578 - 96,414,404 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	96,303,703 - 96,414,404 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	100,743,957 - 100,849,978 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	94,052,873 - 94,138,884 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	89,710,327 - 89,795,437 (+)	NCBI		Celera
RGSC_v3.1	13	94,241,888 - 94,325,858 (+)	NCBI
Cytogenetic Map	13	q25-q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bufotalin (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenvalerate (EXP)

flutamide (EXP)

gentamycin (EXP)

lead diacetate (EXP)

methyl methanesulfonate (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

propanal (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thalidomide (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

sperm principal piece (IBA,ISO)

Molecular Function

calcium ion binding (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Drc8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	92,683,182 - 92,769,939 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	92,684,086 - 92,782,558 (+)	Ensembl				GRCr8
mRatBN7.2	13	90,152,002 - 90,237,918 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	90,152,185 - 90,238,218 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	92,657,438 - 92,743,164 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	94,057,585 - 94,143,324 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	91,239,272 - 91,324,914 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	96,303,578 - 96,414,404 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	96,303,703 - 96,414,404 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	100,743,957 - 100,849,978 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	94,052,873 - 94,138,884 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	89,710,327 - 89,795,437 (+)	NCBI		Celera
RGSC_v3.1	13	94,241,888 - 94,325,858 (+)	NCBI
Cytogenetic Map	13	q25-q26	NCBI

DRC8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	244,969,682 - 245,125,229 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	244,969,682 - 245,127,164 (+)	Ensembl			hg38	GRCh38
GRCh37	1	245,132,984 - 245,288,530 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	243,200,315 - 243,317,761 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	218,422,357 - 218,577,396 (+)	NCBI		Celera
Cytogenetic Map	1	q44	NCBI
HuRef	1	215,516,388 - 215,671,647 (+)	NCBI		HuRef
CHM1_1	1	246,405,474 - 246,560,855 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	244,386,344 - 244,542,663 (+)	NCBI		T2T-CHM13v2.0

Efcab2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	178,233,583 - 178,312,078 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	178,233,650 - 178,312,078 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	178,406,018 - 178,484,513 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	178,406,085 - 178,484,513 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	180,336,012 - 180,413,381 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	180,242,556 - 180,319,925 (+)	NCBI		MGSCv36	mm8
Celera	1	185,465,850 - 185,542,138 (+)	NCBI		Celera
Cytogenetic Map	1	H4	NCBI
cM Map	1	83.16	NCBI

Efcab2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	8,089,232 - 8,239,230 (+)	Ensembl
ChiLan1.0	NW_004955406	8,115,813 - 8,239,352 (+)	NCBI	ChiLan1.0	ChiLan1.0

EFCAB2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	4,025,029 - 4,181,702 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	4,235,100 - 4,405,397 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	220,567,609 - 220,731,339 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	225,948,112 - 226,105,544 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	225,948,238 - 226,102,223 (+)	Ensembl			panPan2	panpan1.1

EFCAB2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	35,917,156 - 36,038,825 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	35,949,240 - 36,038,821 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	35,390,801 - 35,512,461 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	35,746,266 - 35,868,224 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	35,745,980 - 35,868,221 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	35,581,759 - 35,703,560 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	35,596,750 - 35,718,646 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	35,862,310 - 35,984,137 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Efcab2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	48,850,314 - 48,948,695 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936526	5,798,659 - 5,918,007 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936526	5,799,212 - 5,877,183 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EFCAB2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	17,628,396 - 17,656,201 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	17,558,224 - 17,655,269 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	20,041,080 - 20,137,120 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DRC8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	81,995,735 - 82,157,610 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666055	84,224,079 - 84,387,753 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Efcab2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	14,541,405 - 14,609,155 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	14,543,337 - 14,652,003 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Efcab2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	56,748,710 - 56,831,974 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Drc8
633 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	426
Count of miRNA genes:	249
Interacting mature miRNAs:	293
Transcripts:	ENSRNOT00000029723
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH141538

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	90,199,210 - 90,199,392 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	96,350,383 - 96,350,564	NCBI	Rnor6.0
Rnor_5.0	13	100,790,507 - 100,790,688	UniSTS	Rnor5.0
RGSC_v3.4	13	94,100,177 - 94,100,358	UniSTS	RGSC3.4
Celera	13	89,756,716 - 89,756,897	UniSTS
RH 3.4 Map	13	609.4	UniSTS
Cytogenetic Map	13	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	91	59	6	355	191	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000029723 ⟹ ENSRNOP00000037547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,684,212 - 92,768,978 (+)	Ensembl
mRatBN7.2 Ensembl	13	90,152,185 - 90,237,918 (+)	Ensembl
Rnor_6.0 Ensembl	13	96,303,825 - 96,414,404 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084718 ⟹ ENSRNOP00000074977

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,684,214 - 92,768,108 (+)	Ensembl
mRatBN7.2 Ensembl	13	90,152,185 - 90,238,218 (+)	Ensembl
Rnor_6.0 Ensembl	13	96,303,703 - 96,412,494 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109721 ⟹ ENSRNOP00000084748

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,684,095 - 92,768,978 (+)	Ensembl
mRatBN7.2 Ensembl	13	90,192,097 - 90,237,918 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135019 ⟹ ENSRNOP00000107795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,684,408 - 92,778,034 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135158 ⟹ ENSRNOP00000101818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,684,408 - 92,778,034 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000141512 ⟹ ENSRNOP00000111609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,684,212 - 92,782,558 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144005 ⟹ ENSRNOP00000105282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,684,353 - 92,768,978 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000147056 ⟹ ENSRNOP00000106408

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,725,240 - 92,768,108 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000155864 ⟹ ENSRNOP00000099910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,684,086 - 92,768,978 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158471 ⟹ ENSRNOP00000102552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,684,087 - 92,768,978 (+)	Ensembl

RefSeq Acc Id:

NM_001105977 ⟹ NP_001099447

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,684,212 - 92,769,939 (+)	NCBI
mRatBN7.2	13	90,152,185 - 90,237,918 (+)	NCBI
Rnor_6.0	13	96,303,825 - 96,414,404 (+)	NCBI
Rnor_5.0	13	100,743,957 - 100,849,978 (+)	NCBI
RGSC_v3.4	13	94,052,873 - 94,138,884 (+)	RGD
Celera	13	89,710,327 - 89,795,437 (+)	RGD

Sequence:

show sequence

ATAAACAAACAAGGCACCCTACGTCCTTGACAGTCGCAACCAGGCCAAGGCCGGCTCGGGGCCT
TATTAATAAATGACTCCCCTAGGCCCAAAGAACGCCGGCCTCAGTTCTTGGGGGGTTGGGAGAC
GGCCACCGCGCGTCGAGGGGCTTCCTCCGCCTCGTCCCCCTCGCGCGGCCCGCAGGGTTTGTGA
TGGGATCTCCCAGGCGACGGGCTCCGCACCAAGATGGCGGAGGAAAAGGACCCGGAGAGTACAG
AGGCAATAGTGGCAGAACTTCATAAGAAGATCAAAGAGGCGTTTGAAGTGTTTGACCATGAATC
GAATAATACAGTAGATGTAGAGGAAGAAGAACCCACTGGGTACATTCGATTTGAAAAATTTATT
CCAGTGATGACCACAGTACTTCTAGAAAAAAGATACAGACCAATTGCTGAAGATGTCCTTTTGC
GAGCTTTCGAGGTTTTGGATCCAACTAAACGTGGGTTTCTGACTAAGGATGAACTAGTCAAGTA
CATGACTGAGGAAGGCGAGCCTTTTTCCCAAGAGGAAATGGAAGAAATGTTGTCTGCTGCAATT
GATCCTGAATCAAACACCATTAATTACAGAGACTACATAACAATGATGGTGATAGATGAAAATT
AAATGCTCCAAAGACTTCTTTTTTCTCCTTTTAAGACAACTGTAAACATTCAATTTCTAATTGA
AAAGATACTTTGAAAAATTGTCCTAATTTTTACATTTTATCTTAAAATTTCTATATTTAGTGTC
TCATGATATAATTGTTTCAAGGTATTTTGTTTACTAGAGATGATCAATTTAAAACATAAATTTT
TTAGATGACCAGCTTTATGGACAGACAAGTTGATTATTTAAAAGGAATTATACAGTATTTTAAT
GTTAAGTGCATCCTTGCTCATTTTTCCCAACGAGGCCAATGATACATTGAAATTAATTAGACAG
AAAATAGAGATTGATCCTAACCCCCCAAGATTTGCCATAGAAAGCTTTTGCAGGGCAGGATGGC
CACAGACTAGATGTGAGTGGCAGTGTGGTGATGGCTCCTTTCAGAGCAGCAGTAAACACTTCAG
CAGGCAGAATATGGAGGGAGAGCAACTGGAATAACTATTAATAATTGATTTCTTATGAATGCCA
ATTACAAATCTCATTTGAGAGTCTAATAACTTGGGGTAAAATTGAAAATTGCTCATCCAGCATG
TTGCCATTTATGGAGTAGTTGAAGGAGGTGAGGTAATTGAATCCAGAGAGAGGAAGACTGAATG
GAAACAGAGAATGGCAACTCCTTTTTTGTTCTTTACAATTCTCACCTATTCAGAATATCTGTCT
TGGGAGTATTGTCCTGGGTACTGAGTGTATTCATCTGTTGTTACCGGAATGTAGTATCTGAAAG
GCACTGACTCCCAAAGAAAGCAGTTCAATTAGCTCCCAGTTATAGATGGTCAAGGTCCAGGCAG
CATTGTGCAGGCTGAGCGAGGGCCACCCTTGCATGCACCTCACCAAGGTGCAGCTAGACAGACA
GAAGCACGTGGTGGTGCAAGCAAGAGCAGGGAGGCTGGGAGGGAGGGCCAGGCCTGCTCCTTTT
ACAATGGTCCTCTCATAAGAATTACTTTTCAGGCTAGGGAGATGGCTCAAGGGATAACGTATTT
GCTGAGTGTCATTAGATAACGTGCTGGAAGCTGGAGATGAGAGATGGATAAGCTTCTAATTAAT
CAAGGTCACAGTTTACTGAGGGAGGCTTGCAAGTCAATCAGCAACCACACATTCAGGGGACTGA
AGGTTACACAAAAGAAGCAAGAGTCAGCCTGGTGGGGGTGAGGATGGGGGTGAGGGTGCTTTCT
GGTGGGCAGACTCAAAGAGGTAGTAACACATGTCTTAGAAACTTAGTAGTTCTTAAGTTTTGAC
AGTCATTCTTTGAGCAGTTTACTTCAGAGCATGTCAGCAGCAGGACAGCAGATCAAACCCCCAG
AGGTGTCATGAAACACAAGAATCTGGGAAATGAAAGTATGGTTCCTAGATATTTGGAACCTGAT
GAGAGATGAGAGGTCGGAGTGGGAGACAGCAACCATATGCTCAGAGATAATGGGCTAATTGGGG
TTAAGGTTTCTGTGTTTGAACGTGAACTTGATTCTGAAAAATCAGAGAAAGGAGTTGGAGTTGT
AAATAGTCTGAGAAATCCTGTGAAGGTCAAGACCAGAGGCGGGAGACCAGCTGGTAGGCGGCTT
GGTTGGCAGTAAGAGCTGGGCTAGGGGAAGTCAAGCACAAGTCCTCCTAAGTTTCTGCCTGGAG
CACTTGGTAAGTGATGGTGGCAGCCATTCGGATAAGATGCCCAAGGCTTGGGCTGCTAAGCTCG
ACTGTGGTCCTCTCTGGCTTAAGAACTGGTGGGAGGGGGCTGGGGATTTAGCTCAGTGGTAGAG
CGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAA
AAAAAAAAAAAAAAAAGAACTGGTGGGAGATAGAAAGATCAACTGGATAAATAAGGGGACATCT
GTGAGAGACATGGGCTTTGAAGTTGTCAGCATGTGGTGTCCTGG

hide sequence

RefSeq Acc Id:

XM_006250319 ⟹ XP_006250381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI
mRatBN7.2	13	90,152,013 - 90,236,215 (+)	NCBI
Rnor_6.0	13	96,303,578 - 96,412,701 (+)	NCBI
Rnor_5.0	13	100,743,957 - 100,849,978 (+)	NCBI

Sequence:

show sequence

GGCTTGGCTTCCTCCAGCGCCCGGCCCACGTCCGTTTTCGCTCCAGTTCCCTGAGTCGCAGACT
GGCTCTGCTTAGGAGAGGGTGACGCGGGAGAGCACAAGGCCTGGTGGGGTAGGGGTGGGCGGAG
GCTTTTCGGGGAAGGACCGCGGAACGTGCAGGGGCCGCCAGGTCTGCACCGGGTTCTGAGGCGC
ACCTGACACGGCGAAAAAAAAGCTAAATAAAATAAGTAATTAAATAAGTGAATAAATAAACAAA
CAAGGCACCCTACGTCCTTGACAGTCGCAACCAGGCCAAGGCCGGCTCGGGGCCTTATTAATAA
ATGACTCCCCTAGGCCCAAAGAACGCCGGCCTCAGTTCTTGGGGGGTTGGGAGACGGCCACCGC
GCGTCGAGGGGCTTCCTCCGCCTCGTCCCCCTCGCGCGGCCCGCAGGGTTTGTGATGGGATCTC
CCAGGCGACGGGCTCCGCACCAAGATGGCGGAGGAAAAGGACCCGGAGAGTACAGAGGCAATAG
TGGCAGAACTTCATAAGAAGATCAAAGAGGCGTTTGAAGTGTTTGACCATGAATCGAATAATAC
AGTAGATGTGAGAGAGATTGGGACGATTATCAGGTCGTTAGGATGCAGCCCCACTGAAGGAGAA
CTGCACGATTTCATTGCTGAGGTAGAGGAAGAAGAACCCACTGGGTACATTCGATTTGAAAAAT
TTATTCCAGTGATGACCACAGTACTTCTAGAAAAAAGATACAGACCAATTGCTGAAGATGTCCT
TTTGCGAGCTTTCGAGGTTTTGGATCCAACTAAACGTGGGTTTCTGACTAAGGATGAACTAGTC
AAGTACATGACTGAGGAAGGCGAGCCTTTTTCCCAAGAGGAAATGGAAGAAATGTTGTCTGCTG
CAATTGATCCTGAATCAAACACCATTAATTACAGAGACTACATAACAATGATGGTGATAGATGA
AAATTAAATGCTCCAAAGACTTCTTTTTTCTCCTTTTAAGACAACTGTAAACATTCAATTTCTA
ATTGAAAAGATACTTTGAAAAATTGTCCTAATTTTTACATTTTATCTTAAAATTTCTATATTTA
GTGTCTCATGATATAATTGTTTCAAGGTATTTTGTTTACTAGAGATGATCAATTTAAAACATAA
ATTTTTTAGATGACCAGCTTTATGGACAGACAAGTTGATTATTTAAAAGGAATTATACAGTATT
TTAATGTTAA

hide sequence

RefSeq Acc Id:

XM_039090534 ⟹ XP_038946462

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI
mRatBN7.2	13	90,152,007 - 90,236,215 (+)	NCBI

RefSeq Acc Id:

XM_039090535 ⟹ XP_038946463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI
mRatBN7.2	13	90,152,002 - 90,236,215 (+)	NCBI

RefSeq Acc Id:

XM_039090537 ⟹ XP_038946465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI
mRatBN7.2	13	90,152,008 - 90,236,215 (+)	NCBI

RefSeq Acc Id:

XM_039090538 ⟹ XP_038946466

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI
mRatBN7.2	13	90,152,002 - 90,236,215 (+)	NCBI

RefSeq Acc Id:

XM_039090543 ⟹ XP_038946471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,764,144 (+)	NCBI
mRatBN7.2	13	90,152,007 - 90,235,833 (+)	NCBI

RefSeq Acc Id:

XM_039090544 ⟹ XP_038946472

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI
mRatBN7.2	13	90,152,002 - 90,236,215 (+)	NCBI

RefSeq Acc Id:

XM_039090545 ⟹ XP_038946473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,763,570 (+)	NCBI
mRatBN7.2	13	90,152,008 - 90,231,545 (+)	NCBI

RefSeq Acc Id:

XM_039090547 ⟹ XP_038946475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,763,570 (+)	NCBI
mRatBN7.2	13	90,152,010 - 90,231,545 (+)	NCBI

RefSeq Acc Id:

XM_039090549 ⟹ XP_038946477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI
mRatBN7.2	13	90,152,006 - 90,236,215 (+)	NCBI

RefSeq Acc Id:

XM_063272139 ⟹ XP_063128209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,730,745 - 92,763,570 (+)	NCBI

RefSeq Acc Id:

XM_063272140 ⟹ XP_063128210

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,730,745 - 92,768,236 (+)	NCBI

RefSeq Acc Id:

XM_063272141 ⟹ XP_063128211

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,730,745 - 92,768,236 (+)	NCBI

RefSeq Acc Id:

XM_063272142 ⟹ XP_063128212

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,730,745 - 92,768,236 (+)	NCBI

RefSeq Acc Id:

XM_063272143 ⟹ XP_063128213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,730,745 - 92,764,158 (+)	NCBI

RefSeq Acc Id:

XM_063272144 ⟹ XP_063128214

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,730,745 - 92,763,570 (+)	NCBI

RefSeq Acc Id:

XM_063272146 ⟹ XP_063128216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,730,745 - 92,768,056 (+)	NCBI

RefSeq Acc Id:

XM_063272147 ⟹ XP_063128217

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,763,570 (+)	NCBI

RefSeq Acc Id:

XM_063272148 ⟹ XP_063128218

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,763,570 (+)	NCBI

RefSeq Acc Id:

XM_063272149 ⟹ XP_063128219

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,730,745 - 92,763,570 (+)	NCBI

RefSeq Acc Id:

XM_063272150 ⟹ XP_063128220

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,763,570 (+)	NCBI

RefSeq Acc Id:

XM_063272151 ⟹ XP_063128221

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,730,745 - 92,768,056 (+)	NCBI

RefSeq Acc Id:

XM_063272152 ⟹ XP_063128222

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,730,745 - 92,768,236 (+)	NCBI

RefSeq Acc Id:

XM_063272153 ⟹ XP_063128223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,763,570 (+)	NCBI

RefSeq Acc Id:

XM_063272154 ⟹ XP_063128224

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI

RefSeq Acc Id:

XM_063272155 ⟹ XP_063128225

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI

RefSeq Acc Id:

XM_063272156 ⟹ XP_063128226

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI

RefSeq Acc Id:

XM_063272157 ⟹ XP_063128227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,763,570 (+)	NCBI

RefSeq Acc Id:

XM_063272158 ⟹ XP_063128228

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI

RefSeq Acc Id:

XM_063272159 ⟹ XP_063128229

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,763,570 (+)	NCBI

RefSeq Acc Id:

XM_063272160 ⟹ XP_063128230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,763,570 (+)	NCBI

RefSeq Acc Id:

XM_063272161 ⟹ XP_063128231

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI

RefSeq Acc Id:

XM_063272162 ⟹ XP_063128232

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,768,236 (+)	NCBI

RefSeq Acc Id:

XM_063272163 ⟹ XP_063128233

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,683,182 - 92,763,570 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099447	(Get FASTA)	NCBI Sequence Viewer
	NP_001430809	(Get FASTA)	NCBI Sequence Viewer
	NP_001430810	(Get FASTA)	NCBI Sequence Viewer
	NP_001430811	(Get FASTA)	NCBI Sequence Viewer
	NP_001430812	(Get FASTA)	NCBI Sequence Viewer
	NP_001430813	(Get FASTA)	NCBI Sequence Viewer
	NP_001430814	(Get FASTA)	NCBI Sequence Viewer
	XP_006250381	(Get FASTA)	NCBI Sequence Viewer
	XP_038946462	(Get FASTA)	NCBI Sequence Viewer
	XP_038946463	(Get FASTA)	NCBI Sequence Viewer
	XP_038946465	(Get FASTA)	NCBI Sequence Viewer
	XP_038946466	(Get FASTA)	NCBI Sequence Viewer
	XP_038946471	(Get FASTA)	NCBI Sequence Viewer
	XP_038946472	(Get FASTA)	NCBI Sequence Viewer
	XP_038946473	(Get FASTA)	NCBI Sequence Viewer
	XP_038946475	(Get FASTA)	NCBI Sequence Viewer
	XP_038946477	(Get FASTA)	NCBI Sequence Viewer
	XP_063128209	(Get FASTA)	NCBI Sequence Viewer
	XP_063128210	(Get FASTA)	NCBI Sequence Viewer
	XP_063128211	(Get FASTA)	NCBI Sequence Viewer
	XP_063128212	(Get FASTA)	NCBI Sequence Viewer
	XP_063128213	(Get FASTA)	NCBI Sequence Viewer
	XP_063128214	(Get FASTA)	NCBI Sequence Viewer
	XP_063128216	(Get FASTA)	NCBI Sequence Viewer
	XP_063128217	(Get FASTA)	NCBI Sequence Viewer
	XP_063128218	(Get FASTA)	NCBI Sequence Viewer
	XP_063128219	(Get FASTA)	NCBI Sequence Viewer
	XP_063128220	(Get FASTA)	NCBI Sequence Viewer
	XP_063128221	(Get FASTA)	NCBI Sequence Viewer
	XP_063128222	(Get FASTA)	NCBI Sequence Viewer
	XP_063128223	(Get FASTA)	NCBI Sequence Viewer
	XP_063128224	(Get FASTA)	NCBI Sequence Viewer
	XP_063128225	(Get FASTA)	NCBI Sequence Viewer
	XP_063128226	(Get FASTA)	NCBI Sequence Viewer
	XP_063128227	(Get FASTA)	NCBI Sequence Viewer
	XP_063128228	(Get FASTA)	NCBI Sequence Viewer
	XP_063128229	(Get FASTA)	NCBI Sequence Viewer
	XP_063128230	(Get FASTA)	NCBI Sequence Viewer
	XP_063128231	(Get FASTA)	NCBI Sequence Viewer
	XP_063128232	(Get FASTA)	NCBI Sequence Viewer
	XP_063128233	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94803	(Get FASTA)	NCBI Sequence Viewer
	EDL94804	(Get FASTA)	NCBI Sequence Viewer
	EDL94805	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037547.5
	ENSRNOP00000074977.3
	ENSRNOP00000084748
	ENSRNOP00000084748.2
	ENSRNOP00000099910
	ENSRNOP00000099910.1
	ENSRNOP00000101818.1
	ENSRNOP00000102552.1
	ENSRNOP00000105282.1
	ENSRNOP00000106408
	ENSRNOP00000106408.1
	ENSRNOP00000107795.1
	ENSRNOP00000111609.1

RefSeq Acc Id:	NP_001099447 ⟸ NM_001105977
- UniProtKB:	D3ZXJ2 (UniProtKB/TrEMBL), A6JGE7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVEEEEPTGYIRFEKFIPVMTTVLLEKR YRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRD YITMMVIDEN hide sequence

RefSeq Acc Id:	XP_006250381 ⟸ XM_006250319
- Peptide Label:	isoform X15
- UniProtKB:	A0A0G2K9F5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEEKDPESTEAIVAELHKKIKEAFEVFDHESNNTVDVREIGTIIRSLGCSPTEGELHDFIAEV EEEEPTGYIRFEKFIPVMTTVLLEKRYRPIAEDVLLRAFEVLDPTKRGFLTKDELVKYMTEEGE PFSQEEMEEMLSAAIDPESNTINYRDYITMMVIDEN hide sequence

Ensembl Acc Id:

ENSRNOP00000074977 ⟸ ENSRNOT00000084718

Ensembl Acc Id:

ENSRNOP00000037547 ⟸ ENSRNOT00000029723

RefSeq Acc Id:	XP_038946472 ⟸ XM_039090544
- Peptide Label:	isoform X23

RefSeq Acc Id:	XP_038946466 ⟸ XM_039090538
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_038946463 ⟸ XM_039090535
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038946477 ⟸ XM_039090549
- Peptide Label:	isoform X28

RefSeq Acc Id:	XP_038946462 ⟸ XM_039090534
- Peptide Label:	isoform X11
- UniProtKB:	A0A0G2K9F5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946471 ⟸ XM_039090543
- Peptide Label:	isoform X22

RefSeq Acc Id:	XP_038946465 ⟸ XM_039090537
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038946473 ⟸ XM_039090545
- Peptide Label:	isoform X24

RefSeq Acc Id:	XP_038946475 ⟸ XM_039090547
- Peptide Label:	isoform X27

Ensembl Acc Id:

ENSRNOP00000084748 ⟸ ENSRNOT00000109721

RefSeq Acc Id:	XP_063128225 ⟸ XM_063272155
- Peptide Label:	isoform X19

RefSeq Acc Id:	XP_063128228 ⟸ XM_063272158
- Peptide Label:	isoform X25

RefSeq Acc Id:	XP_063128232 ⟸ XM_063272162
- Peptide Label:	isoform X31

RefSeq Acc Id:	XP_063128226 ⟸ XM_063272156
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_063128224 ⟸ XM_063272154
- Peptide Label:	isoform X18

RefSeq Acc Id:	XP_063128231 ⟸ XM_063272161
- Peptide Label:	isoform X30

RefSeq Acc Id:	XP_063128217 ⟸ XM_063272147
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063128220 ⟸ XM_063272150
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063128227 ⟸ XM_063272157
- Peptide Label:	isoform X21

RefSeq Acc Id:	XP_063128233 ⟸ XM_063272163
- Peptide Label:	isoform X32

RefSeq Acc Id:	XP_063128223 ⟸ XM_063272153
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063128218 ⟸ XM_063272148
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063128229 ⟸ XM_063272159
- Peptide Label:	isoform X26

RefSeq Acc Id:	XP_063128230 ⟸ XM_063272160
- Peptide Label:	isoform X29

RefSeq Acc Id:	XP_063128212 ⟸ XM_063272142
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063128210 ⟸ XM_063272140
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZXW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128211 ⟸ XM_063272141
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZXW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128222 ⟸ XM_063272152
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063128216 ⟸ XM_063272146
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063128221 ⟸ XM_063272151
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063128213 ⟸ XM_063272143
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063128209 ⟸ XM_063272139
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063128214 ⟸ XM_063272144
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063128219 ⟸ XM_063272149
- Peptide Label:	isoform X9

Ensembl Acc Id:

ENSRNOP00000111609 ⟸ ENSRNOT00000141512

Ensembl Acc Id:

ENSRNOP00000105282 ⟸ ENSRNOT00000144005

Ensembl Acc Id:

ENSRNOP00000107795 ⟸ ENSRNOT00000135019

Ensembl Acc Id:

ENSRNOP00000099910 ⟸ ENSRNOT00000155864

Ensembl Acc Id:

ENSRNOP00000102552 ⟸ ENSRNOT00000158471

Ensembl Acc Id:

ENSRNOP00000101818 ⟸ ENSRNOT00000135158

Ensembl Acc Id:

ENSRNOP00000106408 ⟸ ENSRNOT00000147056

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K9F5-F1-model_v2	AlphaFold	A0A0G2K9F5	1-164	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699060

Promoter ID:

EPDNEW_R9575

Type:

single initiation site

Name:

Efcab2_1

Description:

EF-hand calcium binding domain 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	96,303,630 - 96,303,690	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308593	AgrOrtholog
BioCyc Gene	G2FUF-17170	BioCyc
Ensembl Genes	ENSRNOG00000042201	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000029723.6	UniProtKB/TrEMBL
	ENSRNOT00000084718.3	UniProtKB/TrEMBL
	ENSRNOT00000109721	ENTREZGENE
	ENSRNOT00000109721.2	UniProtKB/TrEMBL
	ENSRNOT00000135019.1	UniProtKB/TrEMBL
	ENSRNOT00000135158.1	UniProtKB/TrEMBL
	ENSRNOT00000141512.1	UniProtKB/TrEMBL
	ENSRNOT00000144005.1	UniProtKB/TrEMBL
	ENSRNOT00000147056	ENTREZGENE
	ENSRNOT00000147056.1	UniProtKB/TrEMBL
	ENSRNOT00000155864	ENTREZGENE
	ENSRNOT00000155864.1	UniProtKB/TrEMBL
	ENSRNOT00000158471.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-like_dom	UniProtKB/TrEMBL
	EF_hand_Ca-bd	UniProtKB/TrEMBL
KEGG Report	rno:289280	UniProtKB/TrEMBL
NCBI Gene	289280	ENTREZGENE
PANTHER	DYNEIN REGULATORY COMPLEX PROTEIN 8	UniProtKB/TrEMBL
	DYNEIN REGULATORY COMPLEX PROTEIN 8	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
PhenoGen	Drc8	PhenoGen
PROSITE	EF_HAND_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000042201	RatGTEx
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A0G2K9F5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZXW0	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L855_RAT	UniProtKB/TrEMBL
	A0ABK0L9W3_RAT	UniProtKB/TrEMBL
	A0ABK0LE34_RAT	UniProtKB/TrEMBL
	A0ABK0LI01_RAT	UniProtKB/TrEMBL
	A0ABK0LLG6_RAT	UniProtKB/TrEMBL
	A0ABK0LUB8_RAT	UniProtKB/TrEMBL
	A0ABK0M0N3_RAT	UniProtKB/TrEMBL
	A6JGE7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZXJ2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-11-13	Drc8	dynein regulatory complex subunit 8	Efcab2	EF-hand calcium binding domain 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2021-03-09	Efcab2	EF-hand calcium binding domain 2	LOC102550369	EF-hand calcium-binding domain-containing protein 2-like	Data merged from RGD:7503858	737654	PROVISIONAL
2013-12-17	LOC102550369	EF-hand calcium-binding domain-containing protein 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Efcab2	EF-hand calcium binding domain 2	Efcab2_predicted	EF-hand calcium binding domain 2 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Efcab2_predicted	EF-hand calcium binding domain 2 (predicted)	RGD1308593_predicted	similar to RIKEN cDNA 1700073K01 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1308593_predicted	similar to RIKEN cDNA 1700073K01 (predicted)	LOC289280_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC289280_predicted	similar to RIKEN cDNA 1700073K01 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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