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Gene: Vwa5b1 (von Willebrand factor A domain containing 5B1) Rattus norvegicus

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Symbol:

Vwa5b1

Name:

von Willebrand factor A domain containing 5B1

RGD ID:

1308559

Description:

Orthologous to human VWA5B1 (von Willebrand factor A domain containing 5B1); INTERACTS WITH 1,2-dimethylhydrazine; 6-propyl-2-thiouracil; atrazine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC313653; RGD1308559; similar to hypothetical protein FLJ32784; von Willebrand factor A domain-containing protein 5B1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	156,080,599 - 156,148,155 (-)	NCBI		GRCr8
mRatBN7.2	5	150,792,959 - 150,864,849 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	150,797,322 - 150,852,518 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	153,494,374 - 153,549,184 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	155,268,668 - 155,323,482 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	155,250,696 - 155,305,339 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	157,003,505 - 157,060,553 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	157,002,826 - 157,059,508 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	160,746,306 - 160,801,686 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	157,374,009 - 157,428,939 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	157,357,084 - 157,452,371 (-)	NCBI
Celera	5	149,187,008 - 149,241,686 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vwa5b1	Rat	3-hydroxy-3-methylglutaryl-CoA lyase deficiency		ISO	VWA5B1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Deficiency of hydroxymethylglutaryl-CoA lyase	ClinVar	PMID:28492532
Vwa5b1	Rat	congenital disorder of glycosylation Ir		ISO	VWA5B1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital disorder of glycosylation type Ir	ClinVar	PMID:28492532
Vwa5b1	Rat	hyperprolinemia type 2		ISO	VWA5B1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hyperprolinemia type 2	ClinVar	PMID:28492532
Vwa5b1	Rat	Parkinson's disease 6		ISO	VWA5B1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autosomal recessive early-onset Parkinson disease 6	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vwa5b1	Rat	(+)-catechin	multiple interactions	ISO	VWA5B1 (Homo sapiens)	6480464	[Catechin co-treated with Grape Seed Proanthocyanidins] results in decreased expression of VWA5B1 mRNA	CTD	PMID:24763279
Vwa5b1	Rat	1,2-dimethylhydrazine	multiple interactions	EXP		6480464	[APC protein affects the susceptibility to 1 and 2-Dimethylhydrazine] which results in decreased expression of VWA5B1 mRNA	CTD	PMID:27840820
Vwa5b1	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Vwa5b1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of VWA5B1 mRNA	CTD	PMID:24680724
Vwa5b1	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Vwa5b1 (Mus musculus)	6480464	bisphenol S results in increased expression of VWA5B1 mRNA	CTD	PMID:30951980
Vwa5b1	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of VWA5B1 mRNA	CTD	PMID:24780913
Vwa5b1	Rat	acrylamide	decreases expression	ISO	Vwa5b1 (Mus musculus)	6480464	Acrylamide results in decreased expression of VWA5B1 mRNA	CTD	PMID:35032568
Vwa5b1	Rat	atrazine	affects methylation	EXP		6480464	Atrazine affects the methylation of VWA5B1 gene	CTD	PMID:28931070
Vwa5b1	Rat	benzo[a]pyrene	affects methylation	ISO	VWA5B1 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of VWA5B1 5' UTR and Benzo(a)pyrene affects the methylation of VWA5B1 promoter	CTD	PMID:27901495
Vwa5b1	Rat	benzo[e]pyrene	increases methylation	ISO	VWA5B1 (Homo sapiens)	6480464	benzo(e)pyrene results in increased methylation of VWA5B1 exon	CTD	PMID:30157460
Vwa5b1	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of VWA5B1 mRNA	CTD	PMID:25181051
Vwa5b1	Rat	bisphenol A	multiple interactions	ISO	VWA5B1 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of VWA5B1 gene	CTD	PMID:31601247
Vwa5b1	Rat	bisphenol A	increases expression	ISO	Vwa5b1 (Mus musculus)	6480464	bisphenol A results in increased expression of VWA5B1 mRNA	CTD	PMID:30951980
Vwa5b1	Rat	bisphenol F	increases expression	ISO	Vwa5b1 (Mus musculus)	6480464	bisphenol F results in increased expression of VWA5B1 mRNA	CTD	PMID:30951980
Vwa5b1	Rat	chlorpyrifos	increases expression	EXP		6480464	Chlorpyrifos results in increased expression of VWA5B1 mRNA	CTD	PMID:20691718
Vwa5b1	Rat	Cuprizon	increases expression	EXP		6480464	Cuprizone results in increased expression of VWA5B1 mRNA	CTD	PMID:27523638
Vwa5b1	Rat	epoxiconazole	decreases expression	ISO	Vwa5b1 (Mus musculus)	6480464	epoxiconazole results in decreased expression of VWA5B1 mRNA	CTD	PMID:35436446
Vwa5b1	Rat	fulvestrant	multiple interactions	ISO	VWA5B1 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of VWA5B1 gene	CTD	PMID:31601247
Vwa5b1	Rat	glyphosate	decreases expression	EXP		6480464	Glyphosate results in decreased expression of VWA5B1 mRNA	CTD	PMID:38314887
Vwa5b1	Rat	methapyrilene	increases methylation	ISO	VWA5B1 (Homo sapiens)	6480464	Methapyrilene results in increased methylation of VWA5B1 exon	CTD	PMID:30157460
Vwa5b1	Rat	triptonide	increases expression	ISO	Vwa5b1 (Mus musculus)	6480464	triptonide results in increased expression of VWA5B1 mRNA	CTD	PMID:33045310

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Vwa5b1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	156,080,599 - 156,148,155 (-)	NCBI		GRCr8
mRatBN7.2	5	150,792,959 - 150,864,849 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	150,797,322 - 150,852,518 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	153,494,374 - 153,549,184 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	155,268,668 - 155,323,482 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	155,250,696 - 155,305,339 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	157,003,505 - 157,060,553 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	157,002,826 - 157,059,508 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	160,746,306 - 160,801,686 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	157,374,009 - 157,428,939 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	157,357,084 - 157,452,371 (-)	NCBI
Celera	5	149,187,008 - 149,241,686 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

VWA5B1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	20,290,875 - 20,359,518 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	20,290,875 - 20,359,518 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	20,617,368 - 20,686,011 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	20,502,161 - 20,553,974 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	18,940,501 - 19,004,478 (+)	NCBI		Celera
Cytogenetic Map	1	p36.12	NCBI
HuRef	1	18,863,080 - 18,927,066 (+)	NCBI		HuRef
CHM1_1	1	20,727,079 - 20,791,049 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	20,114,458 - 20,183,107 (+)	NCBI		T2T-CHM13v2.0

Vwa5b1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	138,291,540 - 138,363,303 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	138,292,671 - 138,363,195 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	138,564,229 - 138,635,992 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	138,565,360 - 138,635,884 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	138,124,884 - 138,179,907 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	137,841,143 - 137,896,088 (-)	NCBI		MGSCv36	mm8
Celera	4	140,354,597 - 140,411,167 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	70.43	NCBI

Vwa5b1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	882,051 - 938,333 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	874,819 - 938,134 (+)	NCBI	ChiLan1.0	ChiLan1.0

VWA5B1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	206,756,912 - 206,827,665 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	205,872,793 - 205,944,457 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	19,246,882 - 19,315,348 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	20,289,519 - 20,353,256 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	20,289,519 - 20,353,256 (+)	Ensembl	panpan1.1		panPan2

VWA5B1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	78,525,507 - 78,582,674 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	78,528,654 - 78,593,983 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	75,039,081 - 75,096,319 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	79,091,703 - 79,148,807 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	79,094,798 - 79,160,087 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	75,911,018 - 75,968,050 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	76,922,662 - 76,973,670 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	77,994,518 - 78,045,378 (-)	NCBI		UU_Cfam_GSD_1.0

Vwa5b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	40,481,463 - 40,534,387 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	6,322,852 - 6,359,160 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	6,322,852 - 6,359,160 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VWA5B1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	78,552,307 - 78,609,274 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	78,552,803 - 78,614,410 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	72,751,770 - 72,799,891 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VWA5B1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	112,197,665 - 112,262,398 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	112,198,450 - 112,243,041 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	3,955,470 - 4,023,971 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vwa5b1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	5,379,677 - 5,430,047 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	5,379,734 - 5,435,744 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Vwa5b1
429 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	158
Count of miRNA genes:	134
Interacting mature miRNAs:	144
Transcripts:	ENSRNOT00000022282
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
2302369	Scl60	Serum cholesterol level QTL 60	3.13		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	143608201	161165651	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	144358090	157869054	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	143799107	158428037	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	143069996	166846814	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	144377876	161317411	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat

AU049410

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	150,797,369 - 150,797,502 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	157,003,206 - 157,003,338	NCBI	Rnor6.0
Rnor_5.0	5	160,746,395 - 160,746,527	UniSTS	Rnor5.0
RGSC_v3.4	5	157,373,626 - 157,373,758	UniSTS	RGSC3.4
Celera	5	149,186,621 - 149,186,757	UniSTS
Cytogenetic Map	5	q36	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	10	23	113	59	58	27	24	27	6	146	69	93	33	58	31


RefSeq Transcripts	NM_001107988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022282 ⟹ ENSRNOP00000022282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	150,797,322 - 150,852,518 (-)	Ensembl
Rnor_6.0 Ensembl	5	157,002,826 - 157,059,508 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094797 ⟹ ENSRNOP00000092459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	150,797,322 - 150,852,518 (-)	Ensembl

RefSeq Acc Id:

NM_001107988 ⟹ NP_001101458

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	156,081,040 - 156,135,799 (-)	NCBI
mRatBN7.2	5	150,797,753 - 150,852,518 (-)	NCBI
Rnor_6.0	5	157,003,589 - 157,059,091 (-)	NCBI
Rnor_5.0	5	160,746,306 - 160,801,686 (-)	NCBI
RGSC_v3.4	5	157,374,009 - 157,428,939 (-)	RGD
Celera	5	149,187,008 - 149,241,686 (-)	RGD

Sequence:

show sequence

CACTTTGACGGAAGGATTTGGCTCCCAGACTGTGGTTTGAGCTTGAGCTCCCTAAAGAAGAGAAAGGGATTTCTAGGGGTAACAAGAGGAATGGGACCCCAAAACTGAGACTCTGAGCTGAGCAGCCC
CAGAATGCCTGGCCTGTTGAACTGCTTCACGGGGGCAGCCCTGCCTCTCACCGCGTCTGACGTCACCTCCTACGTCAGCGGCTATGCCCTGGGCCTCACGGCCTCCCTTACCTATGGCAACCTGGAGG
CTCAGCCCTTCCAAGGTCTCTTCGTGTATCCGACGGATGAGTGCACCACAGTGGTTGGTTTCGAAGCCGTCATTGCTGACCGAGTTGTGACCATACAGCTCAGAGACAAAGCCAAGCTGGACAGAAGC
TACTTGGATGTCCAATCCGCCACTGTCACAGGGAACCTTCCAGAAGAGGAGATTCCCATCACACCGGGAAAGGTGACCTTGGATGAGGATCTGGAGCGGATTCTGTTCGTGGTCAACCTGGGGACCAT
TGCTCCCATGGAAAATGTCACCATCTTCATCAGTACCTCCTCGGAACTCCCCACGCTACCCAGCGGGGCCGTGAGGGTCCTTCTGCCGGCCATCTGTGCCCCGACCGTGCACCCATTCTGCGCCCACA
GGTTTGGCTCCTCCAGACAACAGCCACGAGGCAAAGACCCACACTGCTTCGGCACCCAGTCCAAGGACTCCTATAAGAGGCTGTGTCTGGCCACTCTCCTGGACACAAAGGTGACCAACCCAATGGAA
TATGAATTCAAATTTCAGCTGGAAATCCGCGGGCCATGTCTGCTTGCAGGGGTGGAGAGTCCCACTCATGAAATCCGAGCAGATGCAGCCCCATCGGCCCACTCAGCCAAAAGCATCATCATCACCTT
GGCCAAAAAACATACCTTTGACCGGCCGGTGGAGATCCTTCTCCACCCCAGTGAGCCCCACATGCCGCATGTCCTGGTGGAGAAAGGGGACATGACCCTGGGGGAATTCTACCAGCACTTGAAGCGAA
AAGCAGATTTCGTTAGAGGAACAAAGAAGGACAACATCGCTGAGCGGAAGACAGAAGTCATCCGGAAGCGTCTCCACAAAGACATTCCCCACCACTCAGTCATCATGCTCAACTTCTGTCCTGACCTC
GAGTCCGTGCAGCCCAACCCCAGGAGGACCCATGGGGAATTTATCTTCCTCATCGACAGGAGCAGCAGCATGAGCAAGACCAACATCCAGTGCATCAAGGAGGCCATGTTGGTGGCCCTTAAGAGCCT
CATGCCAGCATGCCTCTTCAATGTCATTGGTTTCGGATCCACATTTAAGACAGTCTTTGCTTCCAGTCAGATCTACAATGAGGAGAACTTGGCCCTGGCATGTGAATGCATCCAGAGAATGCGAGCTG
ACATGGGAGGCACCAACATATTCTCCCCTCTGAAGTGGGTCCTCCGGCAGCCACTGCGCCAGGGTCACCCACGGCTCCTCTTCCTGATCACCGATGGGTCTGTGAACAACACCGGGAAGGTTCTGGAG
CTGGTGCGGAATCATGCCTCTTCTATCAGGTGCTATAGCTTTGGAATTGGACCCACGGTCTGCTACAGACTGGTAAAAGGGCTGGCGTCTGTATCCAAGGGCAGTGCAGAGTTCCTGATGGAGGGGGA
GCGGCTGCAACCAAAGATGGTCAAATCCTTGAAGAAGGCCATGGCCCCAGTGCTGAGCGACGTGACCGTGGAGTGGGTTTTTCCTGAGACCACGGAGGCCCTGATCTCTCCTGTCAGCACCAGCTCCC
TTTTCCCTGGGGAACGGCTGGTGGGATATGGCATTGTGTGCGATGCCTCCTTGTACATCTCCAATTCCAGATCTGACAAAAGACGAAAGTATGGCATGCTGCATGCTCAGGAGTCCAGCAGCTCTGTC
TTCTACCACTCTCAGGACGAGGGACTCAGGCCAGGCAGCGGAAACTGTGCCAAGAACTTCAACCAGGGGCAGACCAAAGACGCCCATCCATGCAATGGAGACTCCCTCTCCCATCACGGTCTGGATGG
CTCCCGGCGTCGGAGGGCATACAGCACTAATCAGATCTCCAGTCACAAGGCTTGCTCAAGGGCCACCACAGCCAGCGACCCCACTGGGACTACCAGGAGATACCCACTTCGAAAAGCCAAGGTGCAAG
ACCTGGCCCATCAGAGCAGCTCAGAGAGCCAGCAGTGGCAGATTGATCTGCAGCCGCTACTCACCAGAGGCCATGACCCAAGCCAGGGCCCCAGACTTCATGGCCCTGGAGCCCGCAGGCCTTCCCTT
CTTCCTCAAGGCTGCCAGCCCATGCGGTTCTCTGGCCCGGAGCCCCAGGCCTGGAGCCCCGTGAGAGAGCTGGGTCTTGGCTCCGGCCGGAAGTCTGTCCTTAACAGCCGAAGCTCTGAGGACCTAGC
CACAGAGCCACCCCCTTTTCCCTCGACCTTGGAACCAGAGACATCCTCAGACTTGGAGCCCACGGCTGAATTAGAGGAGCAAGCTCCCTACAGGACCGCCACGCCAAGCCCTGTGCTGGGCAAAGTTT
TGGTCAAAGGAGTGTGTGACAACCAGCATATGCAGTGGGAAGTGAGCTTTGAGCTAGAACCTCCAGCCCTGCGGAGGGAGGACACACAGAACGATGACATGTGGGGCGAGACTTTCCACCACCTGGCG
GCCCGCGCCATCATCCGCGAATTCGAGCATCTGGCCCAGCGCGAGGATGAGATTGAGCTGGGGTCCAATCGCAGATACCAGGTGAACGCCGTGCACACCAGCAAGGCCTGCAACGTGATCAGCAAGTA
CACGGCCTTCGTGCCGGTGGACATAAACAAGAGGCAGTACCTGCCCACGGTGGTCAAGTACCACAATTCTGGTGCTCTACTCAGCTTCCGGAACCTGACCCGACAGTGGAAAGGCTTCTCTACTGGCC
TTAGGAGGTCCCAGAGTATGCTCAGAGAACACTCCTCAGCTGCAGGAGACAGCAAATTCCAGACCCTAGCCTTACATGAAAGCCTTACTTCAACCTTCAATAAGACCCCATCCCCTGGGCATGAGAAG
TATGCTACAGCAGAAGGTCCCCCTCAAAACCTGTCCACCAGCTCTCTGTCCTCCACAAAGGCCTCCGAGGCCATCTTTGGATCTAGGTTGATTCTCAACAAATCCAGGCTGCTGACCCGAGCTACCAA
AAACTTTCTCAGCAAATCATTGCCCAAGGCTCCAGAGGTAAACCCAGGCAGCCAGAGCTCTGACTACGTACCACTGGTGTCTCTGCAGCTGGCCTCGGGAGCCTTTTTGCTCAATGAAGTCTTCTGCA
GGACCATCCAAATCCCCATGGAGAAACTCAAGTGGACCTCACCCTTCAACTGCCTCCGAATGTCCCTCGTCACCCGCCGGCATGATTTGAAGACCCAGAGTCCAGGGGACTGCACCAGTCTCTCCTCT
CCACCTCCACCCTCTGACGACATCTCCCTAAAGTCTGGCGCCAAAGACAGCTCAGACCAGGAGTCCAGTGAGCTGCTGGAGCACACGGGGAAGCTGTGGGCCACTGTGGTGGCGCTGGCGTGGCTGGA
ACACAGCTCAGCTAGTTACATCATTGAGTGGGAGCTGGTGGCTGCCAAGGCGAGCTCGTGGGTAGAGCTGCAGGAGGTGCCCGAGGGCCGCACACTGAGCACCATCAAGGCCACTGCTCGCCAGCTGT
TCGTGCTCCTGCGACACTGGGATGAGAACCTGGAGTTCAATATGCTCTGTTACAACCCAAATTATATGTAA

hide sequence

RefSeq Acc Id:

XM_006239199 ⟹ XP_006239261

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	156,080,599 - 156,135,843 (-)	NCBI
mRatBN7.2	5	150,792,959 - 150,852,562 (-)	NCBI
Rnor_6.0	5	157,003,505 - 157,060,553 (-)	NCBI
Rnor_5.0	5	160,746,306 - 160,801,686 (-)	NCBI

Sequence:

show sequence

AGGTGTGCAAATGTGTCAACATAGGTGTGCAAATGTGTCAACATGGGTGTGCAAATGTGTCAACATGGGTGTGCAAATGTCTCAACATGGGTGTGCAAGTGTCTCAACATGGGTGTGCGAATGTGTCG
ACACAGGTGTGCAAATGTCTCAACATAGGTGTGCAAACATGCCAACATAGGTGTGCAAATGTGTCAACATAGGCGTGCAAGTGTCTCAACATGGGCGTGCAAATGTGTCAACATGGGCGTGCAAGGGT
CTCAACATGGGTGTGCAAATGTGTCAACAAAAGTGTGCAAAATGTCAAATGGGTATGCAAGTGTCCCTATGATGTGTTACCCTGAGGTCCTTCAGGGAAATCTCCAGGAATGGTATGTCTGGGTTCTG
TGGCACAGTCTGGTTTTACTGTCTTTGAGGATGCTCTGTATTGATTTCCATGGTGGCTACGCAGGTTTCTATTCCCAAGAACAGTGAAGGGTTCTTCTCTCCCCCACAGCACTCCCCCCCCACCCCGC
CTCCAGAGTCTGCTGTCATTTGTTCCCTTGAGAGCAGACATTCAGACTAGGGTGAGACTGTCTCAAAGCAGTTTTAATTTGCATTTCTCTGATAAGGATATCAAATATGTTTTCAACTGCCTATTGGC
CATTCATGTTTCTTCTCAGGAGAGACGTCTGTTCAGTTCATTAGTCTGTGTACTGGTTGGCTCATTTAGTCTTTAGTGTTTATTTCTACAGTTCTTTATATATCCTACATATTAATTCTCTTGTCTGC
TGTGTAATTGGCAAAGATGTTTTCCCTTCCTGTCCGTTGTCTCTTCACTCCGCTGATTGTTCTGTGTAATTCTGCTGGTCAGCACTTGCAATTATTTCTTGAGCTATTGGGATCCTTTCCAGAGGAGC
CCTGCCTGTCAACAGAGCCCCTGCCTCCAGTTTTCTGGGGGAATGTGTCCTGAATGGGTGGCTGAGAGAAAGAACACAAAGTATGGGGACAAGGGACATGTCTGTCTTGTCCTCCGTCTGTCTGATGG
GTCTGGAACAGACTTCAGCATGCAACAGACATGCCTTGTCCATCCGCTGACAAGACACAGCACATTCAAAGGAAACATGTGATATGAGAACAGCTGGTTCTCTCTGCAGAAAGGACTCAGAGGGCTCT
GTGGAAATGGAAGTCTTTAAGCAGGGCCTTGAGAGTGGCTAAGATTTCCTTCAGGGGTCTGGGGCAAGCCAGCAACACCAGAAGACAGAGCTTAGAGTAATAGTTGGGAGAGGGGAGGTGTTGATGAG
CCAAAAGATGACATAAATGTAGTAATTGTAAACATAGGAGACATAAAGGCGGGGGTATGGCACATGGATGTATGACTCTGGATGAGGGACAGTTTGAGCATGGAAGTCAGAATGTGAAAACCCTAGAG
TTCTAGAAGCTTGGTACAATTGACTTAGACTCTAGGAAAACACCAATTGTGGCCCACTTTGACGGAAGGATTTGGCTCCCAGACTGTGGTTTGAGCTTGAGCTCCCTAAAGAAGAGAAAGGGATTTCT
AGGGGTAACAAGAGGAATGGGACCCCAAAACTGAGACTCTGAGCTGAGCAGCCCCAGAATGCCTGGCCTGTTGAACTGCTTCACGGGGGCAGCCCTGCCTCTCACCGCGTCTGACGTCACCTCCTACG
TCAGCGGCTATGCCCTGGGCCTCACGGCCTCCCTTACCTATGGCAACCTGGAGGCTCAGCCCTTCCAAGGTCTCTTCGTGTATCCGACGGATGAGTGCACCACAGTGGTTGGTTTCGAAGCCGTCATT
GCTGACCGAGTTGTGACCATACAGCTCAGAGACAAAGCCAAGCTGGACAGAAGCTACTTGGATGTCCAATCCGCCACTGTCACAGGGAACCTTCCAGAAGAGGAGATTCCCATCACACCGGGAAAGGT
GACCTTGGATGAGGATCTGGAGCGGATTCTGTTCGTGGTCAACCTGGGGACCATTGCTCCCATGGAAAATGTCACCATCTTCATCAGTACCTCCTCGGAACTCCCCACGCTACCCAGCGGGGCCGTGA
GGGTCCTTCTGCCGGCCATCTGTGCCCCGACCGTGCACCCATTCTGCGCCCACAGGTTTGGCTCCTCCAGACAACAGCCACGAGGCAAAGACCCACACTGCTTCGGCACCCAGTCCAAGGACTCCTAT
AAGAGGCTGTGTCTGGCCACTCTCCTGGACACAAAGGTGACCAACCCAATGGAATATGAATTCAAATTTCAGCTGGAAATCCGCGGGCCATGTCTGCTTGCAGGGGTGGAGAGTCCCACTCATGAAAT
CCGAGCAGATGCAGCCCCATCGGCCCACTCAGCCAAAAGCATCATCATCACCTTGGCCAAAAAACATACCTTTGACCGGCCGGTGGAGATCCTTCTCCACCCCAGTGAGCCCCACATGCCGCATGTCC
TGGTGGAGAAAGGGGACATGACCCTGGGGGAATTCTACCAGCACTTGAAGCGAAAAGCAGATTTCGTTAGAGGAACAAAGAAGGACAACATCGCTGAGCGGAAGACAGAAGTCATCCGGAAGCGTCTC
CACAAAGACATTCCCCACCACTCAGTCATCATGCTCAACTTCTGTCCTGACCTCGAGTCCGTGCAGCCCAACCCCAGGAGGACCCATGGGGAATTTATCTTCCTCATCGACAGGAGCAGCAGCATGAG
CAAGACCAACATCCAGTGCATCAAGGAGGCCATGTTGGTGGCCCTTAAGAGCCTCATGCCAGCATGCCTCTTCAATGTCATTGGTTTCGGATCCACATTTAAGACAGTCTTTGCTTCCAGTCAGATCT
ACAATGAGGAGAACTTGGCCCTGGCATGTGAATGCATCCAGAGAATGCGAGCTGACATGGGAGGCACCAACATATTCTCCCCTCTGAAGTGGGTCCTCCGGCAGCCACTGCGCCAGGGTCACCCACGG
CTCCTCTTCCTGATCACCGATGGGTCTGTGAACAACACCGGGAAGGTTCTGGAGCTGGTGCGGAATCATGCCTCTTCTATCAGGTGCTATAGCTTTGGAATTGGACCCACGGTCTGCTACAGACTGGT
AAAAGGGCTGGCGTCTGTATCCAAGGGCAGTGCAGAGTTCCTGATGGAGGGGGAGCGGCTGCAACCAAAGATGGTCAAATCCTTGAAGAAGGCCATGGCCCCAGTGCTGAGCGACGTGACCGTGGAGT
GGGTTTTTCCTGAGACCACGGAGGCCCTGATCTCTCCTGTCAGCACCAGCTCCCTTTTCCCTGGGGAACGGCTGGTGGGATATGGCATTGTGTGCGATGCCTCCTTGTACATCTCCAATTCCAGATCT
GACAAAAGACGAAAGTATGGCATGCTGCATGCTCAGGAGTCCAGCAGCTCTGTCTTCTACCACTCTCAGGACGAGGGACTCAGGCCAGGCAGCGGAAACTGTGCCAAGAACTTCAACCAGGGGCAGAC
CAAAGACGCCCATCCATGCAATGGAGACTCCCTCTCCCATCACGGTCTGGATGGCTCCCGGCGTCGGAGGGCATACAGCACTAATCAGATCTCCAGTCACAAGGCTTGCTCAAGGGCCACCACAGCCA
GCGACCCCACTGGGACTACCAGGAGATACCCACTTCGAAAAGCCAAGGTGCAAGACCTGGCCCATCAGAGCAGCTCAGAGAGCCAGCAGTGGCAGATTGATCTGCAGCCGCTACTCACCAGAGGCCAT
GACCCAAGCCAGGGCCCCAGACTTCATGGCCCTGGAGCCCGCAGGCCTTCCCTTCTTCCTCAAGGCTGCCAGCCCATGCGGTTCTCTGGCCCGGAGCCCCAGGCCTGGAGCCCCGTGAGAGAGCTGGG
TCTTGGCTCCGGCCGGAAGTCTGTCCTTAACAGCCGAAGCTCTGAGGACCTAGCCACAGAGCCACCCCCTTTTCCCTCGACCTTGGAACCAGAGACATCCTCAGACTTGGAGCCCACGGCTGAATTAG
AGGAGCAAGCTCCCTACAGGACCGCCACGCCAAGCCCTGTGCTGGGCAAAGTTTTGGTCAAAGGAGTGTGTGACAACCAGCATATGCAGTGGGAAGTGAGCTTTGAGCTAGAACCTCCAGCCCTGCGG
AGGGAGGACACACAGAACGATGACATGTGGGGCGAGACTTTCCACCACCTGGCGGCCCGCGCCATCATCCGCGAATTCGAGCATCTGGCCCAGCGCGAGGATGAGATTGAGCTGGGGTCCAATCGCAG
ATACCAGGTGAACGCCGTGCACACCAGCAAGGCCTGCAACGTGATCAGCAAGTACACGGCCTTCGTGCCGGTGGACATAAACAAGAGGCAGTACCTGCCCACGGTGGTCAAGTACCACAATTCTGCCT
TACATGAAAGCCTTACTTCAACCTTCAATAAGACCCCATCCCCTGGGCATGAGAAGTATGCTACAGCAGAAGGTCCCCCTCAAAACCTGTCCACCAGCTCTCTGTCCTCCACAAAGGCCTCCGAGGCC
ATCTTTGGATCTAGGTTGATTCTCAACAAATCCAGGCTGCTGACCCGAGCTACCAAAAACTTTCTCAGCAAATCATTGCCCAAGGCTCCAGAGGTAAACCCAGGCAGCCAGAGCTCTGACTACGTACC
ACTGGTGTCTCTGCAGCTGGCCTCGGGAGCCTTTTTGCTCAATGAAGTCTTCTGCAGGACCATCCAAATCCCCATGGAGAAACTCAAGTGGACCTCACCCTTCAACTGCCTCCGAATGTCCCTCGTCA
CCCGCCGGCATGATTTGAAGACCCAGAGTCCAGGGGACTGCACCAGTCTCTCCTCTCCACCTCCACCCTCTGACGACATCTCCCTAAAGTCTGGCGCCAAAGACAGCTCAGACCAGGAGTCCAGTGAG
CTGCTGGAGCACACGGGGAAGCTGTGGGCCACTGTGGTGGCGCTGGCGTGGCTGGAACACAGCTCAGCTAGTTACATCATTGAGTGGGAGCTGGTGGCTGCCAAGGCGAGCTCGTGGGTAGAGCTGCA
GGAGGTGCCCGAGGGCCGCACACTGAGCACCATCAAGGCCACTGCTCGCCAGCTGTTCGTGCTCCTGCGACACTGGGATGAGAACCTGGAGTTCAATATGCTCTGTTACAACCCAAATTATATGTAAG
GGGTGGGGAGAGGGGTGATGGGCTGTTTTGGTTGATAGGGGAACTTTTTGAAAGCCGTAGCCAATAGAGTGTTGCTAGAAAGA

hide sequence

RefSeq Acc Id:

XM_039110065 ⟹ XP_038965993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	156,080,599 - 156,148,155 (-)	NCBI
mRatBN7.2	5	150,792,959 - 150,864,849 (-)	NCBI

RefSeq Acc Id:

XM_039110066 ⟹ XP_038965994

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	156,094,076 - 156,135,843 (-)	NCBI
mRatBN7.2	5	150,810,806 - 150,852,562 (-)	NCBI

RefSeq Acc Id:

XM_039110067 ⟹ XP_038965995

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	156,095,054 - 156,135,843 (-)	NCBI
mRatBN7.2	5	150,811,909 - 150,852,562 (-)	NCBI

RefSeq Acc Id:

XM_063287790 ⟹ XP_063143860

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	156,080,599 - 156,135,833 (-)	NCBI

RefSeq Acc Id:

XM_063287792 ⟹ XP_063143862

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	156,080,599 - 156,148,155 (-)	NCBI


Protein RefSeqs	NP_001101458	(Get FASTA)	NCBI Sequence Viewer
	XP_006239261	(Get FASTA)	NCBI Sequence Viewer
	XP_038965993	(Get FASTA)	NCBI Sequence Viewer
	XP_038965994	(Get FASTA)	NCBI Sequence Viewer
	XP_038965995	(Get FASTA)	NCBI Sequence Viewer
	XP_063143860	(Get FASTA)	NCBI Sequence Viewer
	XP_063143862	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80882	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022282
	ENSRNOP00000022282.5
	ENSRNOP00000092459
	ENSRNOP00000092459.1

RefSeq Acc Id:

NP_001101458 ⟸ NM_001107988

- UniProtKB:

D3ZP60 (UniProtKB/TrEMBL), A6ITI1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPGLLNCFTGAALPLTASDVTSYVSGYALGLTASLTYGNLEAQPFQGLFVYPTDECTTVVGFEAVIADRVVTIQLRDKAKLDRSYLDVQSATVTGNLPEEEIPITPGKVTLDEDLERILFVVNLGTIA
PMENVTIFISTSSELPTLPSGAVRVLLPAICAPTVHPFCAHRFGSSRQQPRGKDPHCFGTQSKDSYKRLCLATLLDTKVTNPMEYEFKFQLEIRGPCLLAGVESPTHEIRADAAPSAHSAKSIIITLA
KKHTFDRPVEILLHPSEPHMPHVLVEKGDMTLGEFYQHLKRKADFVRGTKKDNIAERKTEVIRKRLHKDIPHHSVIMLNFCPDLESVQPNPRRTHGEFIFLIDRSSSMSKTNIQCIKEAMLVALKSLM
PACLFNVIGFGSTFKTVFASSQIYNEENLALACECIQRMRADMGGTNIFSPLKWVLRQPLRQGHPRLLFLITDGSVNNTGKVLELVRNHASSIRCYSFGIGPTVCYRLVKGLASVSKGSAEFLMEGER
LQPKMVKSLKKAMAPVLSDVTVEWVFPETTEALISPVSTSSLFPGERLVGYGIVCDASLYISNSRSDKRRKYGMLHAQESSSSVFYHSQDEGLRPGSGNCAKNFNQGQTKDAHPCNGDSLSHHGLDGS
RRRRAYSTNQISSHKACSRATTASDPTGTTRRYPLRKAKVQDLAHQSSSESQQWQIDLQPLLTRGHDPSQGPRLHGPGARRPSLLPQGCQPMRFSGPEPQAWSPVRELGLGSGRKSVLNSRSSEDLAT
EPPPFPSTLEPETSSDLEPTAELEEQAPYRTATPSPVLGKVLVKGVCDNQHMQWEVSFELEPPALRREDTQNDDMWGETFHHLAARAIIREFEHLAQREDEIELGSNRRYQVNAVHTSKACNVISKYT
AFVPVDINKRQYLPTVVKYHNSGALLSFRNLTRQWKGFSTGLRRSQSMLREHSSAAGDSKFQTLALHESLTSTFNKTPSPGHEKYATAEGPPQNLSTSSLSSTKASEAIFGSRLILNKSRLLTRATKN
FLSKSLPKAPEVNPGSQSSDYVPLVSLQLASGAFLLNEVFCRTIQIPMEKLKWTSPFNCLRMSLVTRRHDLKTQSPGDCTSLSSPPPPSDDISLKSGAKDSSDQESSELLEHTGKLWATVVALAWLEH
SSASYIIEWELVAAKASSWVELQEVPEGRTLSTIKATARQLFVLLRHWDENLEFNMLCYNPNYM

hide sequence

RefSeq Acc Id:	XP_006239261 ⟸ XM_006239199
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ADZ4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGLLNCFTGAALPLTASDVTSYVSGYALGLTASLTYGNLEAQPFQGLFVYPTDECTTVVGFEA VIADRVVTIQLRDKAKLDRSYLDVQSATVTGNLPEEEIPITPGKVTLDEDLERILFVVNLGTIAPMENVTIFISTSSELPTLPSGAVRVLLPAICAPTVHPFCAHRFGSSRQQPRGKDPHCFGTQSKD SYKRLCLATLLDTKVTNPMEYEFKFQLEIRGPCLLAGVESPTHEIRADAAPSAHSAKSIIITLAKKHTFDRPVEILLHPSEPHMPHVLVEKGDMTLGEFYQHLKRKADFVRGTKKDNIAERKTEVIRK RLHKDIPHHSVIMLNFCPDLESVQPNPRRTHGEFIFLIDRSSSMSKTNIQCIKEAMLVALKSLMPACLFNVIGFGSTFKTVFASSQIYNEENLALACECIQRMRADMGGTNIFSPLKWVLRQPLRQGH PRLLFLITDGSVNNTGKVLELVRNHASSIRCYSFGIGPTVCYRLVKGLASVSKGSAEFLMEGERLQPKMVKSLKKAMAPVLSDVTVEWVFPETTEALISPVSTSSLFPGERLVGYGIVCDASLYISNS RSDKRRKYGMLHAQESSSSVFYHSQDEGLRPGSGNCAKNFNQGQTKDAHPCNGDSLSHHGLDGSRRRRAYSTNQISSHKACSRATTASDPTGTTRRYPLRKAKVQDLAHQSSSESQQWQIDLQPLLTR GHDPSQGPRLHGPGARRPSLLPQGCQPMRFSGPEPQAWSPVRELGLGSGRKSVLNSRSSEDLATEPPPFPSTLEPETSSDLEPTAELEEQAPYRTATPSPVLGKVLVKGVCDNQHMQWEVSFELEPPA LRREDTQNDDMWGETFHHLAARAIIREFEHLAQREDEIELGSNRRYQVNAVHTSKACNVISKYTAFVPVDINKRQYLPTVVKYHNSALHESLTSTFNKTPSPGHEKYATAEGPPQNLSTSSLSSTKAS EAIFGSRLILNKSRLLTRATKNFLSKSLPKAPEVNPGSQSSDYVPLVSLQLASGAFLLNEVFCRTIQIPMEKLKWTSPFNCLRMSLVTRRHDLKTQSPGDCTSLSSPPPPSDDISLKSGAKDSSDQES SELLEHTGKLWATVVALAWLEHSSASYIIEWELVAAKASSWVELQEVPEGRTLSTIKATARQLFVLLRHWDENLEFNMLCYNPNYM hide sequence

Ensembl Acc Id:

ENSRNOP00000022282 ⟸ ENSRNOT00000022282

RefSeq Acc Id:	XP_038965993 ⟸ XM_039110065
- Peptide Label:	isoform X1
- UniProtKB:	D3ZP60 (UniProtKB/TrEMBL), A6ITI1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965994 ⟸ XM_039110066
- Peptide Label:	isoform X3

Protein Domains

VIT VWFA

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZP60-F1-model_v2	AlphaFold	D3ZP60	1-1216	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-39446	BioCyc
Ensembl Genes	ENSRNOG00000016553	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022282	ENTREZGENE
	ENSRNOT00000022282.7	UniProtKB/TrEMBL
	ENSRNOT00000094797	ENTREZGENE
	ENSRNOT00000094797.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.410	UniProtKB/TrEMBL
InterPro	VIT	UniProtKB/TrEMBL
	VWA_domain-containing	UniProtKB/TrEMBL
	VWF_A	UniProtKB/TrEMBL
	vWFA_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:313653	UniProtKB/TrEMBL
NCBI Gene	313653	ENTREZGENE
PANTHER	VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5B1	UniProtKB/TrEMBL
	VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5B2-RELATED	UniProtKB/TrEMBL
Pfam	VIT_2	UniProtKB/TrEMBL
	VWA_3	UniProtKB/TrEMBL
PhenoGen	Vwa5b1	PhenoGen
PROSITE	VIT	UniProtKB/TrEMBL
	VWFA	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016553	RatGTEx
SMART	VWA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53300	UniProtKB/TrEMBL
UniProt	A0A8I6ADZ4	ENTREZGENE, UniProtKB/TrEMBL
	A6ITI1	ENTREZGENE, UniProtKB/TrEMBL
	D3ZP60	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-09	Vwa5b1	von Willebrand factor A domain containing 5B1	RGD1308559	similar to hypothetical protein FLJ32784	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1308559	similar to hypothetical protein FLJ32784	RGD1308559_predicted	similar to hypothetical protein FLJ32784 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1308559_predicted	similar to hypothetical protein FLJ32784 (predicted)	LOC313653_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC313653_predicted	similar to hypothetical protein FLJ32784 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar