Ccdc158 (coiled-coil domain containing 158) - Rat Genome Database

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Gene: Ccdc158 (coiled-coil domain containing 158) Rattus norvegicus
Analyze
Symbol: Ccdc158
Name: coiled-coil domain containing 158
RGD ID: 1308523
Description: Predicted to enable clathrin binding activity. Predicted to be involved in receptor-mediated endocytosis. Predicted to be located in clathrin-coated vesicle and early endosome. Orthologous to human CCDC158 (coiled-coil domain containing 158); INTERACTS WITH atrazine; bisphenol A; decabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 158; LOC289502; RGD1308523; similar to RIKEN cDNA 4932413O14 gene
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,695,456 - 15,752,896 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1415,695,512 - 15,752,941 (+)EnsemblGRCr8
mRatBN7.21415,411,178 - 15,468,579 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,411,163 - 15,468,581 (+)EnsemblmRatBN7.2
Rnor_6.01416,917,138 - 16,976,240 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1416,924,960 - 16,974,514 (+)Ensemblrn6Rnor6.0
Rnor_5.01416,831,004 - 16,889,759 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41416,978,445 - 17,029,879 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1414,805,961 - 14,865,128 (+)NCBICelera
RGSC_v3.11416,978,423 - 17,029,914 (+)NCBI
Cytogenetic Map14p22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ccdc158
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,695,456 - 15,752,896 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1415,695,512 - 15,752,941 (+)EnsemblGRCr8
mRatBN7.21415,411,178 - 15,468,579 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1415,411,163 - 15,468,581 (+)EnsemblmRatBN7.2
Rnor_6.01416,917,138 - 16,976,240 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1416,924,960 - 16,974,514 (+)Ensemblrn6Rnor6.0
Rnor_5.01416,831,004 - 16,889,759 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41416,978,445 - 17,029,879 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1414,805,961 - 14,865,128 (+)NCBICelera
RGSC_v3.11416,978,423 - 17,029,914 (+)NCBI
Cytogenetic Map14p22NCBI
CCDC158
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38476,313,039 - 76,421,869 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl476,312,997 - 76,421,868 (-)Ensemblhg38GRCh38
GRCh37477,234,192 - 77,342,294 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36477,453,216 - 77,547,482 (-)NCBIBuild 36Build 36hg18NCBI36
Celera474,534,331 - 74,628,604 (-)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef472,986,435 - 73,080,715 (-)NCBIHuRef
CHM1_1477,210,688 - 77,304,947 (-)NCBICHM1_1
T2T-CHM13v2.0479,653,758 - 79,762,651 (-)NCBIT2T-CHM13v2.0
Ccdc158
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,756,096 - 92,823,327 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl592,755,813 - 92,823,130 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38592,608,237 - 92,675,472 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,607,954 - 92,675,271 (-)Ensemblmm10GRCm38
MGSCv37593,037,321 - 93,104,153 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36593,683,499 - 93,750,331 (-)NCBIMGSCv36mm8
Celera590,749,700 - 90,817,804 (-)NCBICelera
Cytogenetic Map5E2NCBI
cM Map547.23NCBI
Ccdc158
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554331,042,049 - 1,116,349 (-)Ensembl
ChiLan1.0NW_0049554331,040,193 - 1,120,585 (-)NCBIChiLan1.0ChiLan1.0
CCDC158
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2353,643,460 - 53,754,363 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1453,836,088 - 53,946,986 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0447,779,913 - 47,888,386 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1453,619,462 - 53,727,331 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl453,628,428 - 53,727,331 (+)EnsemblpanPan2panpan1.1
CCDC158
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.132957,336 - 1,084,795 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl32957,402 - 1,060,813 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3240,801,136 - 40,926,874 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.032981,827 - 1,108,936 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl32981,889 - 1,084,734 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.132979,696 - 1,106,915 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.032933,883 - 1,061,935 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03239,114,492 - 39,241,822 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc158
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528511,110,926 - 11,201,385 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936676306,003 - 383,037 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936676305,884 - 396,317 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC158
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,990,119 - 72,088,829 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1871,990,113 - 72,088,966 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2876,185,066 - 76,288,882 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC158
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1724,806,412 - 24,921,781 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl724,806,543 - 24,904,107 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660373,155,504 - 3,271,794 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc158
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475714,564,535 - 14,625,979 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475714,548,889 - 14,642,186 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccdc158
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1115,434,099 - 5,484,310 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccdc158
475 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:35
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000003009, ENSRNOT00000067471
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14395787821572472Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14395787818558812Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14939329839411170Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141133490630674469Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141133471628389666Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14395787831121464Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14117877928Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14395787824886169Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141513759431238250Rat

Markers in Region
D14Got22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21415,429,372 - 15,429,671 (+)MAPPERmRatBN7.2
Rnor_6.01416,935,281 - 16,935,579NCBIRnor6.0
Rnor_5.01416,848,865 - 16,849,163UniSTSRnor5.0
RGSC_v3.41416,989,097 - 16,989,394RGDRGSC3.4
RGSC_v3.41416,989,098 - 16,989,396UniSTSRGSC3.4
Celera1414,824,225 - 14,824,523UniSTS
RGSC_v3.11416,989,097 - 16,989,394RGD
RH 3.4 Map14197.2UniSTS
RH 3.4 Map14197.2RGD
RH 2.0 Map14199.0RGD
Cytogenetic Map14p22UniSTS
AU049304  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21415,450,897 - 15,451,122 (+)MAPPERmRatBN7.2
Rnor_6.01416,956,806 - 16,957,030NCBIRnor6.0
Rnor_5.01416,870,390 - 16,870,614UniSTSRnor5.0
RGSC_v3.41417,011,684 - 17,011,908UniSTSRGSC3.4
Celera1414,845,734 - 14,845,956UniSTS
Cytogenetic Map14p22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 158 91 90 59 83 59 6 339 183 11 137 73 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001432697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC103535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000003009   ⟹   ENSRNOP00000003009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1415,695,512 - 15,752,941 (+)Ensembl
mRatBN7.2 Ensembl1415,411,163 - 15,468,581 (+)Ensembl
Rnor_6.0 Ensembl1416,924,960 - 16,974,514 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109423   ⟹   ENSRNOP00000096558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1415,695,561 - 15,752,934 (+)Ensembl
mRatBN7.2 Ensembl1415,411,163 - 15,432,714 (+)Ensembl
RefSeq Acc Id: XM_039092662   ⟹   XP_038948590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,752,896 (+)NCBI
mRatBN7.21415,411,181 - 15,468,579 (+)NCBI
RefSeq Acc Id: XM_039092663   ⟹   XP_038948591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,752,896 (+)NCBI
mRatBN7.21415,411,181 - 15,468,579 (+)NCBI
RefSeq Acc Id: XM_039092664   ⟹   XP_038948592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,670 - 15,752,896 (+)NCBI
mRatBN7.21415,411,344 - 15,468,579 (+)NCBI
RefSeq Acc Id: XM_039092665   ⟹   XP_038948593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,670 - 15,752,896 (+)NCBI
mRatBN7.21415,411,344 - 15,468,579 (+)NCBI
RefSeq Acc Id: XM_039092666   ⟹   XP_038948594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,752,896 (+)NCBI
mRatBN7.21415,411,180 - 15,468,579 (+)NCBI
RefSeq Acc Id: XM_039092667   ⟹   XP_038948595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,669 - 15,752,896 (+)NCBI
mRatBN7.21415,411,344 - 15,468,579 (+)NCBI
RefSeq Acc Id: XM_039092668   ⟹   XP_038948596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,752,896 (+)NCBI
mRatBN7.21415,411,178 - 15,468,579 (+)NCBI
RefSeq Acc Id: XM_039092669   ⟹   XP_038948597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,752,896 (+)NCBI
mRatBN7.21415,411,181 - 15,468,579 (+)NCBI
RefSeq Acc Id: XM_039092670   ⟹   XP_038948598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,752,896 (+)NCBI
mRatBN7.21415,411,180 - 15,468,579 (+)NCBI
RefSeq Acc Id: XM_039092672   ⟹   XP_038948600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,721,518 (+)NCBI
mRatBN7.21415,411,180 - 15,437,200 (+)NCBI
RefSeq Acc Id: XM_039092673   ⟹   XP_038948601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,717,428 (+)NCBI
mRatBN7.21415,411,179 - 15,433,569 (+)NCBI
RefSeq Acc Id: XM_063273741   ⟹   XP_063129811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,752,896 (+)NCBI
RefSeq Acc Id: XM_063273742   ⟹   XP_063129812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,752,896 (+)NCBI
RefSeq Acc Id: XM_063273743   ⟹   XP_063129813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,752,896 (+)NCBI
RefSeq Acc Id: XM_063273744   ⟹   XP_063129814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,456 - 15,717,428 (+)NCBI
RefSeq Acc Id: XM_063273746   ⟹   XP_063129816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,717,428 (+)NCBI
RefSeq Acc Id: XM_063273747   ⟹   XP_063129817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,695,457 - 15,717,428 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001419626 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419627 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419628 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419629 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419630 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419631 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419632 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948590 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948591 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948592 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948593 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948594 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948595 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948596 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948597 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948598 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948600 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948601 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129811 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129812 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129813 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129814 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129816 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129817 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003009
  ENSRNOP00000003009.7
  ENSRNOP00000096558
  ENSRNOP00000096558.2
Ensembl Acc Id: ENSRNOP00000003009   ⟸   ENSRNOT00000003009
RefSeq Acc Id: XP_038948596   ⟸   XM_039092668
- Peptide Label: isoform X1
- UniProtKB: D3ZHH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948601   ⟸   XM_039092673
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038948598   ⟸   XM_039092670
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038948594   ⟸   XM_039092666
- Peptide Label: isoform X1
- UniProtKB: D3ZHH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948600   ⟸   XM_039092672
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038948597   ⟸   XM_039092669
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948590   ⟸   XM_039092662
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038948591   ⟸   XM_039092663
- Peptide Label: isoform X1
- UniProtKB: D3ZHH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948592   ⟸   XM_039092664
- Peptide Label: isoform X1
- UniProtKB: D3ZHH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948593   ⟸   XM_039092665
- Peptide Label: isoform X1
- UniProtKB: D3ZHH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948595   ⟸   XM_039092667
- Peptide Label: isoform X1
- UniProtKB: D3ZHH5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096558   ⟸   ENSRNOT00000109423
RefSeq Acc Id: XP_063129814   ⟸   XM_063273744
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AQZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129811   ⟸   XM_063273741
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063129812   ⟸   XM_063273742
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063129813   ⟸   XM_063273743
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063129816   ⟸   XM_063273746
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AQZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129817   ⟸   XM_063273747
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AQZ6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHH5-F1-model_v2 AlphaFold D3ZHH5 1-1111 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308523 AgrOrtholog
BioCyc Gene G2FUF-16273 BioCyc
Ensembl Genes ENSRNOG00000002204 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003009 ENTREZGENE
  ENSRNOT00000003009.10 UniProtKB/TrEMBL
  ENSRNOT00000109423 ENTREZGENE
  ENSRNOT00000109423.2 UniProtKB/TrEMBL
InterPro CCDC158 UniProtKB/TrEMBL
NCBI Gene 289502 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 158 UniProtKB/TrEMBL
  PTHR47615 UniProtKB/TrEMBL
Pfam CCDC158 UniProtKB/TrEMBL
PhenoGen Ccdc158 PhenoGen
RatGTEx ENSRNOG00000002204 RatGTEx
UniProt A0A8I6AQZ6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZHH5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-12 Ccdc158  coiled-coil domain containing 158  RGD1308523  similar to RIKEN cDNA 4932413O14 gene   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1308523  similar to RIKEN cDNA 4932413O14 gene   RGD1308523_predicted  similar to RIKEN cDNA 4932413O14 gene (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1308523_predicted  similar to RIKEN cDNA 4932413O14 gene (predicted)  LOC289502_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC289502_predicted  similar to RIKEN cDNA 4932413O14 gene (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL