Mypn (myopalladin) - Rat Genome Database

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Gene: Mypn (myopalladin) Rattus norvegicus
Analyze
Symbol: Mypn
Name: myopalladin
RGD ID: 1308510
Description: Predicted to enable SH3 domain binding activity and muscle alpha-actinin binding activity. Predicted to be involved in cell-cell adhesion and sarcomere organization. Located in Z disc and nucleus. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1KK and nemaline myopathy 11. Orthologous to human MYPN (myopalladin); INTERACTS WITH (S)-nicotine; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC309760
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82025,435,554 - 25,521,149 (+)NCBIGRCr8
mRatBN7.22025,429,898 - 25,522,443 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2025,436,843 - 25,522,443 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2026,129,740 - 26,215,377 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02025,482,765 - 25,568,401 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02026,069,325 - 26,154,935 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02026,988,820 - 27,074,106 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2026,988,774 - 27,074,138 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02028,829,554 - 28,914,644 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42025,457,133 - 25,531,818 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12025,471,952 - 25,589,885 (-)NCBI
Celera2026,744,077 - 26,818,492 (+)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
I band  (IDA,ISO)
intracellular membrane-bounded organelle  (ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IDA)
Z disc  (IDA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Myopalladin, a novel 145-kilodalton sarcomeric protein with multiple roles in Z-disc and I-band protein assemblies. Bang ML, etal., J Cell Biol. 2001 Apr 16;153(2):413-27.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:28017374  


Genomics

Comparative Map Data
Mypn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82025,435,554 - 25,521,149 (+)NCBIGRCr8
mRatBN7.22025,429,898 - 25,522,443 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2025,436,843 - 25,522,443 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2026,129,740 - 26,215,377 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02025,482,765 - 25,568,401 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02026,069,325 - 26,154,935 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02026,988,820 - 27,074,106 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2026,988,774 - 27,074,138 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02028,829,554 - 28,914,644 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42025,457,133 - 25,531,818 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12025,471,952 - 25,589,885 (-)NCBI
Celera2026,744,077 - 26,818,492 (+)NCBICelera
Cytogenetic Map20p11NCBI
MYPN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381068,087,897 - 68,212,017 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1068,087,897 - 68,212,017 (+)EnsemblGRCh38hg38GRCh38
GRCh371069,865,764 - 69,971,774 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361069,539,256 - 69,641,780 (+)NCBINCBI36Build 36hg18NCBI36
Build 341069,538,999 - 69,641,464NCBI
Celera1063,143,861 - 63,246,302 (+)NCBICelera
Cytogenetic Map10q21.3NCBI
HuRef1063,865,720 - 63,971,479 (+)NCBIHuRef
CHM1_11070,147,622 - 70,253,538 (+)NCBICHM1_1
T2T-CHM13v2.01068,956,458 - 69,080,820 (+)NCBIT2T-CHM13v2.0
Mypn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,951,574 - 63,039,731 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,951,574 - 63,039,731 (-)EnsemblGRCm39 Ensembl
GRCm381063,115,795 - 63,203,952 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1063,115,795 - 63,203,952 (-)EnsemblGRCm38mm10GRCm38
MGSCv371062,578,543 - 62,666,700 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361062,511,137 - 62,604,287 (-)NCBIMGSCv36mm8
Celera1064,215,962 - 64,304,031 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.54NCBI
Mypn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542520,471,047 - 20,544,105 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542520,461,654 - 20,545,626 (+)NCBIChiLan1.0ChiLan1.0
MYPN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2880,270,078 - 80,375,293 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11080,275,401 - 80,380,616 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01064,590,232 - 64,696,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11066,916,666 - 67,006,529 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1066,902,008 - 67,004,967 (+)Ensemblpanpan1.1panPan2
MYPN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1419,364,146 - 19,468,827 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl419,381,416 - 19,465,995 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha419,496,464 - 19,606,631 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0419,633,801 - 19,743,812 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl419,651,134 - 19,737,009 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1419,516,593 - 19,626,556 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0419,738,577 - 19,848,657 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0420,081,868 - 20,191,947 (+)NCBIUU_Cfam_GSD_1.0
Mypn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721361,561,178 - 61,649,670 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493652110,050,638 - 10,142,395 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493652110,050,638 - 10,142,395 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYPN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1471,299,505 - 71,387,025 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11471,283,271 - 71,388,591 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21477,293,135 - 77,398,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MYPN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1963,173,243 - 63,279,777 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl963,174,804 - 63,279,133 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604823,941,972 - 24,047,621 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mypn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247542,467,071 - 2,598,386 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247542,466,980 - 2,596,288 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mypn
417 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:129
Interacting mature miRNAs:151
Transcripts:ENSRNOT00000057872
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat

Markers in Region
RH131759  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22025,522,111 - 25,522,303 (+)MAPPERmRatBN7.2
Rnor_6.02027,073,775 - 27,073,966NCBIRnor6.0
Rnor_5.02028,914,313 - 28,914,504UniSTSRnor5.0
RGSC_v3.42025,457,264 - 25,457,455UniSTSRGSC3.4
Celera2026,818,170 - 26,818,361UniSTS
Cytogenetic Map20p11UniSTS
AI853556  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22025,522,327 - 25,522,413 (+)MAPPERmRatBN7.2
Rnor_6.02027,073,991 - 27,074,076NCBIRnor6.0
Rnor_5.02028,914,529 - 28,914,614UniSTSRnor5.0
RGSC_v3.42025,457,154 - 25,457,239UniSTSRGSC3.4
Celera2026,818,386 - 26,818,471UniSTS
Cytogenetic Map20p11UniSTS
AU049089  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22025,458,907 - 25,459,042 (+)MAPPERmRatBN7.2
Rnor_6.02027,010,922 - 27,011,056NCBIRnor6.0
Rnor_5.02028,851,626 - 28,851,760UniSTSRnor5.0
RGSC_v3.42025,520,557 - 25,520,691UniSTSRGSC3.4
Celera2026,755,200 - 26,755,334UniSTS
Cytogenetic Map20p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 73 77 79 48 21 48 6 196 90 56 41 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000057872   ⟹   ENSRNOP00000054681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2025,436,843 - 25,522,443 (+)Ensembl
Rnor_6.0 Ensembl2026,999,795 - 27,074,097 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090083   ⟹   ENSRNOP00000071299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2025,436,843 - 25,522,443 (+)Ensembl
Rnor_6.0 Ensembl2026,988,774 - 27,074,138 (+)Ensembl
RefSeq Acc Id: NM_001368817   ⟹   NP_001355746
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82025,435,554 - 25,521,149 (+)NCBI
mRatBN7.22025,436,843 - 25,522,443 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001355746 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL97356 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000054681.2
  ENSRNOP00000071299.1
Ensembl Acc Id: ENSRNOP00000054681   ⟸   ENSRNOT00000057872
Ensembl Acc Id: ENSRNOP00000071299   ⟸   ENSRNOT00000090083
RefSeq Acc Id: NP_001355746   ⟸   NM_001368817
- UniProtKB: A0A0G2K046 (UniProtKB/TrEMBL),   A6JKZ0 (UniProtKB/TrEMBL),   D4A7X7 (UniProtKB/TrEMBL)
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K046-F1-model_v2 AlphaFold A0A0G2K046 1-1306 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701571
Promoter ID:EPDNEW_R12092
Type:initiation region
Name:Mypn_1
Description:myopalladin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02026,988,868 - 26,988,928EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308510 AgrOrtholog
BioCyc Gene G2FUF-3817 BioCyc
Ensembl Genes ENSRNOG00000000383 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057872.3 UniProtKB/TrEMBL
  ENSRNOT00000090083.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CaM-dependent_Ser/Thr_kinase UniProtKB/TrEMBL
  Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene 309760 ENTREZGENE
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  IMMUNOGLOBULIN UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
PhenoGen Mypn PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000383 RatGTEx
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0G2K046 ENTREZGENE, UniProtKB/TrEMBL
  A6JKZ0 ENTREZGENE, UniProtKB/TrEMBL
  D4A7X7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mypn  myopalladin   Mypn_predicted  myopalladin (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mypn_predicted  myopalladin (predicted)      Symbol and Name status set to approved 70820 APPROVED