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Gene: Triobp (TRIO and F-actin binding protein) Rattus norvegicus

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Symbol:

Triobp

Name:

TRIO and F-actin binding protein

RGD ID:

1308485

Description:

Predicted to enable actin filament binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of substrate adhesion-dependent cell spreading. Predicted to act upstream of or within auditory receptor cell stereocilium organization and sensory perception of sound. Predicted to be located in stereocilium base. Predicted to be active in actin cytoskeleton. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 28. Orthologous to human TRIOBP (TRIO and F-actin binding protein); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC362956; TRIO and F-actin-binding protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TRIOBP (TRIO and F-actin binding protein)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Triobp (TRIO and F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TRIOBP (TRIO and F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TRIOBP (TRIO and F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Triobp (TRIO and F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TRIOBP (TRIO and F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TRIOBP (TRIO and F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Triobp (TRIO and F-actin binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PRKCB (protein kinase C beta)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Triobp (TRIO and F-actin binding protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TRIOBP (TRIO and F-actin binding protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	triobpb (TRIO and F-actin binding protein b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	triobpa (TRIO and F-actin binding protein a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	triobpa (TRIO and F-actin binding protein a)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	F10G8.8	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F10G8.8	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	osp	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	osp	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	triobp	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	triobp	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	112,386,371 - 112,452,130 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	112,386,420 - 112,442,924 (+)	Ensembl				GRCr8
mRatBN7.2	7	110,505,916 - 110,569,301 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	110,506,248 - 110,562,474 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	112,287,666 - 112,311,867 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	114,511,189 - 114,535,390 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	114,479,768 - 114,504,098 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	120,173,892 - 120,237,145 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	120,176,530 - 120,230,420 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	120,168,221 - 120,228,826 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	116,917,008 - 116,969,695 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	106,842,713 - 106,896,626 (+)	NCBI		Celera
RGSC_v3.1	7	116,980,831 - 116,993,049 (+)	NCBI
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive nonsyndromic deafness (ISO)

autosomal recessive nonsyndromic deafness 28 (ISO,ISS)

Deafness (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

Meniere's disease (ISO)

nonsyndromic deafness (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (EXP,ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

4-nitrophenol (ISO)

5-fluorouracil (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

butan-1-ol (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

coumestrol (ISO)

CU-O LINKAGE (ISO)

Cuprizon (EXP)

dexamethasone (ISO)

dimethyl sulfoxide (ISO)

diuron (EXP)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

exemestane (ISO)

fenthion (ISO)

FR900359 (ISO)

GSK-J4 (ISO)

indometacin (ISO)

leflunomide (ISO)

methidathion (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

ozone (ISO)

paclitaxel (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

quercetin (ISO)

rac-lactic acid (ISO)

tert-butyl hydroperoxide (ISO)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament bundle assembly (ISO)

auditory receptor cell stereocilium organization (ISO)

positive regulation of substrate adhesion-dependent cell spreading (IBA,ISO)

sensory perception of sound (ISO)

Cellular Component

actin cytoskeleton (IBA,IEA,ISO)

cuticular plate (ISO)

cytoskeleton (IEA)

stereocilium (ISO)

stereocilium base (ISO)

stereocilium shaft (ISO)

Molecular Function

actin binding (IEA)

actin filament binding (IBA,ISO)

protein binding (ISO)

ubiquitin protein ligase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:11148140	PMID:18194665	PMID:20510926	PMID:21423176	PMID:29507111

Genomics

Comparative Map Data

Triobp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	112,386,371 - 112,452,130 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	112,386,420 - 112,442,924 (+)	Ensembl				GRCr8
mRatBN7.2	7	110,505,916 - 110,569,301 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	110,506,248 - 110,562,474 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	112,287,666 - 112,311,867 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	114,511,189 - 114,535,390 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	114,479,768 - 114,504,098 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	120,173,892 - 120,237,145 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	120,176,530 - 120,230,420 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	120,168,221 - 120,228,826 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	116,917,008 - 116,969,695 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	106,842,713 - 106,896,626 (+)	NCBI		Celera
RGSC_v3.1	7	116,980,831 - 116,993,049 (+)	NCBI
Cytogenetic Map	7	q34	NCBI

TRIOBP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	37,697,048 - 37,776,556 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	37,697,048 - 37,776,556 (+)	Ensembl			hg38	GRCh38
GRCh37	22	38,093,055 - 38,172,563 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	36,423,574 - 36,502,509 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	22	21,894,838 - 21,974,375 (+)	NCBI		Celera
Cytogenetic Map	22	q13.1	NCBI
HuRef	22	21,059,927 - 21,139,806 (+)	NCBI		HuRef
CHM1_1	22	38,051,700 - 38,131,297 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	38,158,316 - 38,238,088 (+)	NCBI		T2T-CHM13v2.0

Triobp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	78,831,924 - 78,890,069 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	78,831,924 - 78,890,069 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	78,947,724 - 79,005,869 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	78,947,724 - 79,005,869 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	78,778,154 - 78,836,299 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	78,774,979 - 78,833,124 (+)	NCBI		MGSCv36	mm8
Celera	15	81,078,111 - 81,107,504 (+)	NCBI		Celera
Cytogenetic Map	15	E1	NCBI
cM Map	15	37.7	NCBI

TRIOBP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	47,554,490 - 47,636,527 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	50,242,516 - 50,326,567 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	18,662,794 - 18,693,138 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	36,487,338 - 36,524,404 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	36,451,860 - 36,522,391 (+)	Ensembl			panPan2	panpan1.1

TRIOBP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	26,856,981 - 26,913,330 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	26,857,678 - 26,911,083 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	26,811,904 - 26,834,990 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	27,648,784 - 27,671,889 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	27,648,360 - 27,671,889 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	27,371,705 - 27,394,760 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	27,680,414 - 27,703,444 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	27,857,643 - 27,880,686 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Triobp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	10,327,377 - 10,380,012 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	3,335,023 - 3,358,913 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	3,337,791 - 3,390,420 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRIOBP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	10,066,086 - 10,126,491 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	10,066,080 - 10,132,668 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	7,561,822 - 7,597,543 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRIOBP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	20,447,340 - 20,476,669 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	105,344,581 - 105,372,614 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Triobp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624752	10,130,857 - 10,186,242 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Triobp
134 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	906
Count of miRNA genes:	164
Interacting mature miRNAs:	182
Transcripts:	ENSRNOT00000013839, ENSRNOT00000056206, ENSRNOT00000067341
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	92388565	119280177	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	82111245	123048330	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	104186212	135371468	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	73618702	118618702	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	93302009	131686183	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	71621154	114982716	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	85043242	130043242	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	85497398	130497398	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	83626689	128626689	Rat
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	82111382	132099989	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
631201	Panci1	Pancreas inflammation QTL 1	0	0.001	pancreas integrity trait (VT:0010560)	percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)	7	73557047	118557047	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	82111245	123048330	Rat
2313102	Bmd79	Bone mineral density QTL 79	2.3	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	7	96700404	118618702	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	110725024	135371468	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
10450862	Kidm55	Kidney mass QTL 55	4.9		kidney mass (VT:0002707)	kidney weight (CMO:0000081)	7	72725037	117725037	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	100548246	137014596	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
10450856	Livw4	Liver weight QTL 4	3.8		liver mass (VT:0003402)	liver weight (CMO:0000092)	7	72725037	117725037	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	78682549	123682549	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	71621154	119349044	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

AA892317

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	110,562,155 - 110,562,252 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	120,230,102 - 120,230,198	NCBI	Rnor6.0
Rnor_5.0	7	120,221,783 - 120,221,879	UniSTS	Rnor5.0
RGSC_v3.4	7	116,970,574 - 116,970,670	UniSTS	RGSC3.4
Celera	7	106,896,308 - 106,896,404	UniSTS
RH 3.4 Map	7	819.3	UniSTS
Cytogenetic Map	7	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001395663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001409036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC169041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB545631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF203432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF203433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000086853 ⟹ ENSRNOP00000073745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	112,386,420 - 112,442,924 (+)	Ensembl
mRatBN7.2 Ensembl	7	110,543,319 - 110,562,474 (+)	Ensembl
Rnor_6.0 Ensembl	7	120,206,188 - 120,229,223 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087548 ⟹ ENSRNOP00000071930

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	112,386,420 - 112,442,924 (+)	Ensembl
mRatBN7.2 Ensembl	7	110,506,248 - 110,562,474 (+)	Ensembl
Rnor_6.0 Ensembl	7	120,176,530 - 120,230,420 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094572 ⟹ ENSRNOP00000078284

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	112,386,420 - 112,442,924 (+)	Ensembl
mRatBN7.2 Ensembl	7	110,506,248 - 110,562,474 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112806 ⟹ ENSRNOP00000092060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	112,418,613 - 112,442,924 (+)	Ensembl
mRatBN7.2 Ensembl	7	110,538,025 - 110,562,473 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135393 ⟹ ENSRNOP00000102182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	112,386,420 - 112,442,924 (+)	Ensembl

RefSeq Acc Id:

NM_001395663 ⟹ NP_001382592

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,418,613 - 112,442,924 (+)	NCBI
mRatBN7.2	7	110,538,160 - 110,562,474 (+)	NCBI

RefSeq Acc Id:

NM_001409036 ⟹ NP_001395965

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,386,420 - 112,442,924 (+)	NCBI
mRatBN7.2	7	110,505,965 - 110,562,474 (+)	NCBI

RefSeq Acc Id:

XM_017594983 ⟹ XP_017450472

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,386,371 - 112,442,924 (+)	NCBI
mRatBN7.2	7	110,505,916 - 110,562,474 (+)	NCBI
Rnor_6.0	7	120,173,898 - 120,230,420 (+)	NCBI

Sequence:

show sequence

TTTGATTCATTGTTAAAATAGAGGCTGTGACTCTGGCACTAGTACCTCCATCGCCCCGTGAGTG
GAAACCCGAGTCCAGGGAGGATTTTTCTTCCAGTTTGTTGGGGGTCGTGAAGAAAACTGGAGTC
AGAAGGGGCTCATGAAGAACCCCTGTTTAGCTTCCCTGGAAAAGGAGCCACATTCTCCATCCAA
GAGGACGCTCCTCTCGGTGACTGAACCAAAAAAGAACAGCCCAGGCCCCACCTAGAGAGCCAGC
CACTGTGGCTCACCTGCTATGGAGGAAGCGACTATGAATGTTCCAAGTGTACACTCTGAAGCCA
GTGTATCTGCCAAGAGCCACTGTCTGAGCTGCTGTCACCCTGGGGATGTCCATGGAGCAAGACA
CCAGAGCACTTCTGCCCACCCAGGGCACTGCCTGGGCTACAGCCTCTGTTCCAGTCGCCAGGCT
CCAGGGTCCCCAGGGAGACTCCCACCAGGCCTGCTCTCAGGAGCCTCACAGCCCTCCCAGTGCT
GAGGCACCCTACTGTGACCTGCCTCGCTGCCCACCGGCCCTGCAGGACCCACTCCACACCACCA
CCTGTGTTGGCCAGTCTGTGGACAACCTTGGTCTTGGCCTTGACCAGGAGCCTCAGAGGATTGG
GTCCCCAACAACAGCTCTCCCTGCAGACCCAAGGAACAGGCACCGGGACCCCGAGGCGATACCC
TATCTGGAGGGCCCGGCCTATAGCACTGACGAACACAAAGACGAGGACCCCAACTCCAATACCA
GCTCCAGCCAAGACAGCAATACCCCTCATGATACCAGCAATTCCTCTTCTGTGCAGGATTGGGA
CACTGTTGAGAGGCCTGGGGTGGTCCCCAACAGGAACAGACTCACCATGATGATCCCAAGGAGG
CCTCAGGAGGGGTTGAGAACTGACAGTGCTCAAAAGGTCACCAGGTCCCCAGCCAGAGGAGACA
CAGCAGGCCAGAGGAAGGAGAATTCTGGCAGTGGTGGACAGAGCGCTGGCCAGCACTGGGTGAA
GCTGCGATCAGAAAGCGGCTACTTCTCTCTGGAGCGACAGCGCTCAGGGCAAACCCAGGCTTCC
TCTGGGACACCACCAAGCGGACCTCGGACCACCACCCAGGCTTCTTCTGCTCAAAGGGATGTTT
CCCAGGCTGCTTCTGCACAAGAAGCTCCCCAAACCTCCTCTCTGCCCCGAAACACCCAAAGGGA
TACACAGCGAAGCACCCCTAGAACTTCCTCTCCTTCAAGAGTATCCCAGAGGGATACTCCTAGA
ATCATGTCTACCCAGCGAAAGAATACTCCACTTTCCTCTCCCCTCAGACCCACTCCAGAGACCC
TGAAGACCTCTGCTCCAGAAGATGGTCCCCATGTTACATCACCTCTGTGTGCCCAAGACTCCTC
TCTCAATAGAACCACCCAGAGGGACAGCTCTCGAACTTCCTGTGCCCAGAGAAACAATCCCAGA
ACCTCATCTCCCAACAGAACCACCCAGCGTGATAACCCCAGAACTTCTTGTGCCCAGAGGAACA
ATCCCAGGACCTCCTCCCCCAACAGAACTACCCAGCAGGATAACCCCAGAACTTCTTGTGCCCA
GAGAAACAATCCCAGAACCTCATCTCCCAGCAGAACCACCCAGCATGATAACCCCAGAACTTCT
TGTGCCCAGAGGGACAATCCCAGGACCTCATCTCCCAACAGAACCACCCAGCAGGATAACCCCA
GAATGTCTTGTGCTCAGAGAAACAATCCCAGGACCTCCTCTCCCAACAGAACCACCCAGCGTGA
TAACCTCAGAACTTCTTGTGCCCAGAGAAACAATCCCAGGACCTCCTCTCCCAACAGAACTATC
CATCAGGATAACCCCAGAACTTCCTGCGTATCACAGAATACCCCCAGGACCTCTTCTACTCAAG
TAGACAAGACTACAGCTTCCTGCAGCAGATGGGAACATCTCCGAAGCGCCTGCACCCAACGAGA
CAACCCCAGGACCCTCTCTCAAGGCTGTACCCAAAAGGACAATCCAGGCCCATCCTCTCCCCAC
CGTGCCACTCAGGGGAGTAGCTCCAGGAATCCTTCTCCCCACCGTACCAACAAAGATATCCCCT
GGGCTTCCTTTCCCCTTCGGCCAACCCAAAGTGACAGTTCCCGAACCTCATCACCATCACGCAC
CAAACAAAACCAGGTGCCTTGGGCATCCATTTCTCTCCGGCCAACCCAAGGGGACAAGCCTCAA
ACCTCAGCTCCTAGCAAGCTAGCTCATAATGACCCTCCCCAGCAGTATTCGCCATCCCTGGCCA
CCTCCTCCTCCTCCTCTCATAACCCTGGCCATCCCAGTGCCTCTAGGACTTCATCGCCTCTTCA
CCCAGCACCACGAGGGGCTCCCCAGACCTCTTTGGAGCCCTCTCAGCCACCATGTGCTGTGTGC
ATTGGGCACCGGGATGCACCTCGCGCCTCTTCCCCGCCGCGCTATTTTCAGTATGACCCTTTCC
CCTTTTTCCCAGATCCCCGCTCGTCTGAGAGCGAATCACCCCACCATGAACCCCCCTACATGCC
CCCTGCAGTGTGTATTGGGCATCGTGATGCCCCCCGGGCCACTTCACCACCTCGTCACACCCAG
TTCGATCCCTTCCCCTTCCTCCCAGACACATCAGATGCTGAGAATGAGTCCCCCCAGCACGATC
CTCCTCAGTTTCCCCCACCAGTGTGCATCGGGTACCGCGATGCTCCGCGGGCCTCTTCCCCACC
ACGCCAGTTCCCAGAGCCCTCCTTCTTCCAAGATCTCCCCAGGGCCAGCACAGAGAGCCTTGTC
CCTTCCACAGACTCTATGCATGAGCCTCCCCACATTCCCACTCCTGTGTGTATTGGGCACAGAG
ACGCTCCCTCCTTCTCCTCCCCACCACGCCAGGCCCCTGAGCCTTCCCTCTTTTTCCAGGATCC
TCCTGGGACCAGTATGGAGAGTCTTGCCCCTTCCGTTGACTCTTTGCATGGCTCCCCACTGCTG
CTCCCACAAGTATGCATCGGACATCGAGATGCACCCAGAGCCTCCTCTCCTCCCCGCCACCCAC
CTAGTGACGTAGGTATCCTGGCACCCTCACCTCCACCAGGTAGCTCAGGCTCCCGGGGCTCAGC
ACCCCCAGGGGAGACCAGACATAACTTGGAGAGGGAAGAGTACACCATGCTGGCTGACCTGCCC
CCACCCAGGAGGCTGGCTCAGAGGGTGCCAGAGCCCCAGGCACAGGGCAGCAACGAGGGCCGTA
CCCGCAGCCCTGGCCGAGCAGAGGTGGAGCGCCTCTTCGGGCAAGAGCGCAGGAAATCGGAGGC
ACCGGGGGCCTTCCAGGCTCGGGATGAGGGACGGTCACAGCGGCCCAGCCAAGGTCAGAGCCAA
CTTCGAAGACAGTCCAGTCCTGCCCCCAGCAGGCAGGTGACCAAACCTTCTGCCAAGCAGGCAG
AGCCAACTCGGCAGAGCCGAACAGGACCTCCACATCCTAAGAGTCCGGAGAAGCATTCTGAGGG
AGACCGGCAGCTCCAGAGGATCGCACCACCTGCCAGGACATCAGCCAGGCCTCCTGAGAGGAAG
GCTCAGATAGAGAGGCATCTGGAGAGTGGCTACACAGGCCTGAGGCAGCCTCTGGGAGGGTGGC
AGAGCCGGGAGGGGCTGTCAGGACCCCAAAGTCCTAACAGACACCCAGAAAAGAACTGGGGCAG
CCAGGAGGAGGGCCTAAGTCTGGGAGGCTGGCCGGAACTTGGGGGTCCCAGCCTGGAGGGGATA
TGGAGGGGCCCTCCCCAGGAACACAGGGAAAGGTGGGGACAGTCAGAGGCCTGGGAGGAGCCTC
CCAGTAATGGAATACAGGGGGGGCCCCCAAGGGGCCAAGGTAGCCTTCAGGAATTGCCCAGGCC
CCACCAGCCTCCACCTTCCCCAGAGAACTCCTGGGCAGGCCCAGCAGAATGCTTTTGTGCTCGG
CAGCCTGAAGCCGGCACTGCTATGGGCTGGAGGGCTGAGGGAACATCCCCACACCAGTATAGTG
CTGAGAGGCCACCCGACTTAGATTGGAGGGACCTGCTAGGCCTTCTCCGGGCACCTGAGGATGG
GGCCTGGACCCGGCTCCCAAGGCTGGACTGGGAAGGCCTCTTGGAGCTCCTGCAGGCTAGACTG
CCCCAAAAAGACCCGACTAGGCACTCGCGTGACCCAGCCAAAGCTCCAGGACCAGAGCCGGGTT
CCTCAGACACAGAGGACACCCTGAAGACAGAGTCGCAGACCCAGCCTGAAGGATGGGCCAAGGC
CACCCTAGCCAATGGACACAGGCCTGGCCAGCAGTCAGAGAGCCCCGCACAGCTACCCAGCCCT
GCCTGTACCTCCACCCAGTGGCCAACAACCAAAGTGACAAGTGGACCAGAAACTTCACCTCCGG
TTGCTCTGGAGCAGATAGATCACCTAGAAAGCCACAGCCCACCAGACCTGGGGCCCGATCTGCT
CAACTTCAAGAAGGGATGGATGTCGATCTTGGATGAGCCTGGAGAGTGGAAAAAGCATTGGTTT
GTGCTGACAGATTCAAGCCTCAAATATTACAGAGACTCCACGGCTGAGGAGGCCGATGAGCTGG
ATGGGGAGATCGACCTGCGATCCTGCACGGACGTCACAGAATATGCAGTCCAGCGCAACTATGG
CTTCCAGATCCATACCAAGGATGCTGTATATACCTTGTCGGCCATGACCTCGGGCATCCGGCGG
AACTGGATTGAGGCTCTCAGGAAGACTGTGCGTCCAACTTCAGCCCCAGATGTCACCAAGCTCT
CAGAATGCAATAAGGAAAACACACTGCATGGCTACGGCACTCAGAAGAGCTCCCTGAAGATAGG
GGAGCAGCGGACGGGCTCTGAAGTTATCGGCCGGGGTGGTCCTCGAAAGGTGGATGGATCACGG
CAGTCACTGGACTACGTGGAACTCTCTCCATTAACGCCAAGCTCCCCACAGCGCGTGCGTACTC
TGTCCCGCTCCACTCCTGAACGCCCAAGCAAACAGGAGGATCTGGAGCGGGACCTGGCACAACG
CTCTGAGGAAAGACGCAAGTGGTTCGAGTCCACGGACAGCAGGACCCCAGAGACGCCCAGTGGT
GATGGGTCTCGAAGGGGCCTGGGTGCCCCACTGACTGATGACCAGCAGAGCAGGCTCAGTGAGG
AGATTGAGAAGAAGTGGCAGGAACTGGAAAAGCTGCCCCTGCGGGAGAACAAGCGAGTGCCGCT
CACTGCCTTGCTCAACCAAGGCCACAGTGAGCGTCGGGGACCTACAAGTGACAGCCATGAGGCC
CTGGAGAAGGAGGTCCAGTCTCTTCGTGCCCAGCTGGAGGCTTGGCGTCTCCGAGGGGAAGCTC
CTCAGAATGCACCCAGACTCCAGGAGGACAGCCATATCCCTCCAGGCTACATCTCACAGGAAGC
CTGTGAGCGCAGCCTGGCAGAGATGGAGTCCTCACACCAGCAGGTGATGGAGCAGCTGCAGCGG
CACCATGAGCGAGAGCTGCAGAGGCTGCAGCAGGAGAAGGAGTGGCTACTGGCTGAGGAGACGG
CAGCCACGGCCTCAGCCATTGAAGCCATGAAGAAGGCTTATCAAGAAGAGCTAAGCCGGGAGCT
GAGCAAAACACGGAGTCTCCAGCAGGGCCCAGATAGCCTTCGGAAGCAACACCAGTTGGACATG
GAGGCGCTGAAACAGGAGCTGCAGGTGCTGTCTGAGAGGTACTCGCAGAAGTGCCTGGAGATCG
GGGCCCTGACAAGGCAGGCGGAGGAGCGAGAGCACACCCTGCGGTGCTGCCAGCAGGAGGGCCA
GGAGCTGCTGCGCCACAACCAGGAGCTGCACTCCCACCTGTCTGAGGAGATCGACCGTCTGCGC
AGTTTCATTGCCTCTCAGGGCACAGGCAACAGCTGTGGGCGCAGCAATGAGAGGAGCTCCTGTG
AGCTGGAGGTGCTGCTGCGAGTGAAGGAGAATGAACTCCAGTACCTGAAAAAGGAGGTGCAGTG
TCTCCGGGACGAACTCCAGGTGATACAGAAGGACAAGCGCTTCACGGGAAAGTACCAGGACGTG
TATGTGGAGCTGAACCACATCAAGACTCGGTCAGAGCGTGAGATCGAGCAGCTGAAGGAGCACC
TGCGCCTGGCCATGGCTGCCCTGCAGGAGAAGGAGGCTGTAAGGAACAGCTTGGCTGAGTAGAG
GTCCCTGTGGTTCCCATCAGCTGAGGACCCTCCAGCCCCAGGGGACCAGCCACCCTCCTTCTCT
GGCAGAAGTCAGAAGCCAAGCTTTCTCCCCACCCTGGGTCACATGTGCACTCACACCACACACA
CACACACACACACACACACACACACACACACACACATATACACATATATGCACAGACACACCCT
GCGGATCTGAGCTCGTCCCTTGCACAGGGTCTTACCTTGCACCTTCTTCAGGATTTTATATGTG
AAGAGATTTTTATATAGATTTTTTTCCGCCTTTTTTTTTCTAAAACATTTGAACTTTTTAAAAA
GGCAGTTCTCGATGATGTGTGCCTCAAGCACTGGCTCCTGTTCCTCTCTGATCCCTGGCATGGC
CCTCCTTCCGACCCTGGTTTCTCACAAAGGCCCAAGCAGGGTCAGGGTGATTGACCAGAGAGAG
AAGGCAGGGAGCAGCCCTCTCTTCCTGCCCTACCTCTACTAACCACTTCCTGCCCTGGCCTCTG
GACATGGGGACCAGGGGGCAGAGGGAGGAGCCAGTAGCTGTCCCCATAGTTCCACTCCTCTGAG
GGGTGCTGAGTGAGGACCACCAGTGCCACCCATGAAGACGCTTCTCCTCTGTTCCATGAGTCAT
CCTAACTTAATAAAACCTTCCGGCAACTA

hide sequence

RefSeq Acc Id:

XM_039079579 ⟹ XP_038935507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,386,371 - 112,452,130 (+)	NCBI
mRatBN7.2	7	110,505,916 - 110,569,301 (+)	NCBI

RefSeq Acc Id:

XM_039079581 ⟹ XP_038935509

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,386,371 - 112,442,924 (+)	NCBI
mRatBN7.2	7	110,505,916 - 110,562,474 (+)	NCBI

RefSeq Acc Id:

XM_039079582 ⟹ XP_038935510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,386,371 - 112,435,094 (+)	NCBI
mRatBN7.2	7	110,505,916 - 110,550,402 (+)	NCBI

RefSeq Acc Id:

XM_039079583 ⟹ XP_038935511

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,386,371 - 112,414,898 (+)	NCBI
mRatBN7.2	7	110,505,916 - 110,534,444 (+)	NCBI

RefSeq Acc Id:

XM_063263918 ⟹ XP_063119988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,386,371 - 112,412,812 (+)	NCBI

RefSeq Acc Id:

XM_063263919 ⟹ XP_063119989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,418,604 - 112,452,130 (+)	NCBI

RefSeq Acc Id:

XM_063263920 ⟹ XP_063119990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	112,418,604 - 112,435,094 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001382592	(Get FASTA)	NCBI Sequence Viewer
	NP_001395965	(Get FASTA)	NCBI Sequence Viewer
	XP_017450472	(Get FASTA)	NCBI Sequence Viewer
	XP_038935507	(Get FASTA)	NCBI Sequence Viewer
	XP_038935509	(Get FASTA)	NCBI Sequence Viewer
	XP_038935510	(Get FASTA)	NCBI Sequence Viewer
	XP_038935511	(Get FASTA)	NCBI Sequence Viewer
	XP_063119988	(Get FASTA)	NCBI Sequence Viewer
	XP_063119989	(Get FASTA)	NCBI Sequence Viewer
	XP_063119990	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88419	(Get FASTA)	NCBI Sequence Viewer
	AAI69041	(Get FASTA)	NCBI Sequence Viewer
	ABM98429	(Get FASTA)	NCBI Sequence Viewer
	ABM98430	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071930
	ENSRNOP00000071930.2
	ENSRNOP00000073745
	ENSRNOP00000073745.2
	ENSRNOP00000078284
	ENSRNOP00000078284.1
	ENSRNOP00000092060
	ENSRNOP00000092060.1
	ENSRNOP00000102182.1

RefSeq Acc Id:	XP_017450472 ⟸ XM_017594983
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G2J5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSMEQDTRALLPTQGTAWATASVPVARLQGPQGDSHQACSQEPHSPPSAEAPYCDLPRCPPALQ DPLHTTTCVGQSVDNLGLGLDQEPQRIGSPTTALPADPRNRHRDPEAIPYLEGPAYSTDEHKDE DPNSNTSSSQDSNTPHDTSNSSSVQDWDTVERPGVVPNRNRLTMMIPRRPQEGLRTDSAQKVTR SPARGDTAGQRKENSGSGGQSAGQHWVKLRSESGYFSLERQRSGQTQASSGTPPSGPRTTTQAS SAQRDVSQAASAQEAPQTSSLPRNTQRDTQRSTPRTSSPSRVSQRDTPRIMSTQRKNTPLSSPL RPTPETLKTSAPEDGPHVTSPLCAQDSSLNRTTQRDSSRTSCAQRNNPRTSSPNRTTQRDNPRT SCAQRNNPRTSSPNRTTQQDNPRTSCAQRNNPRTSSPSRTTQHDNPRTSCAQRDNPRTSSPNRT TQQDNPRMSCAQRNNPRTSSPNRTTQRDNLRTSCAQRNNPRTSSPNRTIHQDNPRTSCVSQNTP RTSSTQVDKTTASCSRWEHLRSACTQRDNPRTLSQGCTQKDNPGPSSPHRATQGSSSRNPSPHR TNKDIPWASFPLRPTQSDSSRTSSPSRTKQNQVPWASISLRPTQGDKPQTSAPSKLAHNDPPQQ YSPSLATSSSSSHNPGHPSASRTSSPLHPAPRGAPQTSLEPSQPPCAVCIGHRDAPRASSPPRY FQYDPFPFFPDPRSSESESPHHEPPYMPPAVCIGHRDAPRATSPPRHTQFDPFPFLPDTSDAEN ESPQHDPPQFPPPVCIGYRDAPRASSPPRQFPEPSFFQDLPRASTESLVPSTDSMHEPPHIPTP VCIGHRDAPSFSSPPRQAPEPSLFFQDPPGTSMESLAPSVDSLHGSPLLLPQVCIGHRDAPRAS SPPRHPPSDVGILAPSPPPGSSGSRGSAPPGETRHNLEREEYTMLADLPPPRRLAQRVPEPQAQ GSNEGRTRSPGRAEVERLFGQERRKSEAPGAFQARDEGRSQRPSQGQSQLRRQSSPAPSRQVTK PSAKQAEPTRQSRTGPPHPKSPEKHSEGDRQLQRIAPPARTSARPPERKAQIERHLESGYTGLR QPLGGWQSREGLSGPQSPNRHPEKNWGSQEEGLSLGGWPELGGPSLEGIWRGPPQEHRERWGQS EAWEEPPSNGIQGGPPRGQGSLQELPRPHQPPPSPENSWAGPAECFCARQPEAGTAMGWRAEGT SPHQYSAERPPDLDWRDLLGLLRAPEDGAWTRLPRLDWEGLLELLQARLPQKDPTRHSRDPAKA PGPEPGSSDTEDTLKTESQTQPEGWAKATLANGHRPGQQSESPAQLPSPACTSTQWPTTKVTSG PETSPPVALEQIDHLESHSPPDLGPDLLNFKKGWMSILDEPGEWKKHWFVLTDSSLKYYRDSTA EEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALRKTVRPTSA PDVTKLSECNKENTLHGYGTQKSSLKIGEQRTGSEVIGRGGPRKVDGSRQSLDYVELSPLTPSS PQRVRTLSRSTPERPSKQEDLERDLAQRSEERRKWFESTDSRTPETPSGDGSRRGLGAPLTDDQ QSRLSEEIEKKWQELEKLPLRENKRVPLTALLNQGHSERRGPTSDSHEALEKEVQSLRAQLEAW RLRGEAPQNAPRLQEDSHIPPGYISQEACERSLAEMESSHQQVMEQLQRHHERELQRLQQEKEW LLAEETAATASAIEAMKKAYQEELSRELSKTRSLQQGPDSLRKQHQLDMEALKQELQVLSERYS QKCLEIGALTRQAEEREHTLRCCQQEGQELLRHNQELHSHLSEEIDRLRSFIASQGTGNSCGRS NERSSCELEVLLRVKENELQYLKKEVQCLRDELQVIQKDKRFTGKYQDVYVELNHIKTRSEREI EQLKEHLRLAMAALQEKEAVRNSLAE hide sequence

Ensembl Acc Id:

ENSRNOP00000071930 ⟸ ENSRNOT00000087548

Ensembl Acc Id:

ENSRNOP00000073745 ⟸ ENSRNOT00000086853

RefSeq Acc Id:	XP_038935507 ⟸ XM_039079579
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G2J5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935509 ⟸ XM_039079581
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6G2J5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935510 ⟸ XM_039079582
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6G2J5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935511 ⟸ XM_039079583
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000078284 ⟸ ENSRNOT00000094572

Ensembl Acc Id:

ENSRNOP00000092060 ⟸ ENSRNOT00000112806

RefSeq Acc Id:	NP_001395965 ⟸ NM_001409036
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I6G2J5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001382592 ⟸ NM_001395663
- Peptide Label:	isoform 1
- UniProtKB:	A0A8I6AHC8 (UniProtKB/TrEMBL), B5DFF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119988 ⟸ XM_063263918
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063119989 ⟸ XM_063263919
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AHC8 (UniProtKB/TrEMBL), B5DFF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119990 ⟸ XM_063263920
- Peptide Label:	isoform X7
- UniProtKB:	Q5M7V4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102182 ⟸ ENSRNOT00000135393

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K1P8-F1-model_v2	AlphaFold	A0A0G2K1P8	1-2017	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695479

Promoter ID:

EPDNEW_R5998

Type:

initiation region

Name:

Triobp_1

Description:

TRIO and F-actin binding protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	120,206,140 - 120,206,200	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308485	AgrOrtholog
BioCyc Gene	G2FUF-32788	BioCyc
Ensembl Genes	ENSRNOG00000059015	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000086853	ENTREZGENE
	ENSRNOT00000086853.3	UniProtKB/TrEMBL
	ENSRNOT00000087548	ENTREZGENE
	ENSRNOT00000087548.3	UniProtKB/TrEMBL
	ENSRNOT00000094572	ENTREZGENE
	ENSRNOT00000094572.2	UniProtKB/TrEMBL
	ENSRNOT00000112806	ENTREZGENE
	ENSRNOT00000112806.2	UniProtKB/TrEMBL
	ENSRNOT00000135393.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/TrEMBL
InterPro	Actin_Cytoskeleton_Reg	UniProtKB/TrEMBL
	M-RIP_PH	UniProtKB/TrEMBL
	PH_type	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
NCBI Gene	362956	ENTREZGENE
PANTHER	PLECKSTRIN HOMOLOGY PH DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	TRIO AND F-ACTIN-BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	PF00169	UniProtKB/TrEMBL
PhenoGen	Triobp	PhenoGen
PROSITE	PH_DOMAIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000059015	RatGTEx
SMART	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
UniProt	A0A0G2K1P8_RAT	UniProtKB/TrEMBL
	A0A0G2K6B2_RAT	UniProtKB/TrEMBL
	A0A8I6AHC8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G2J5	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LC42_RAT	UniProtKB/TrEMBL
	A2TIS7_RAT	UniProtKB/TrEMBL
	A2TIS8_RAT	UniProtKB/TrEMBL
	B5DFF5	ENTREZGENE, UniProtKB/TrEMBL
	Q5M7V4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Triobp	TRIO and F-actin binding protein	Triobp_predicted	TRIO and F-actin binding protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Triobp_predicted	TRIO and F-actin binding protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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