Dennd1b (DENN domain containing 1B) - Rat Genome Database

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Pathways
Gene: Dennd1b (DENN domain containing 1B) Rattus norvegicus
Analyze
Symbol: Dennd1b
Name: DENN domain containing 1B
RGD ID: 1308441
Description: Predicted to enable guanyl-nucleotide exchange factor activity; phosphatidylinositol phosphate binding activity; and small GTPase binding activity. Predicted to be involved in endocytic recycling; endocytosis; and positive regulation of immune response. Predicted to be located in clathrin-coated vesicle. Predicted to be active in cytosol and nuclear speck. Orthologous to human DENND1B (DENN domain containing 1B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DENN domain-containing protein 1B; DENN/MADD domain containing 1B; Fam31b; family with sequence similarity 31, member B; LOC289051
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81353,096,717 - 53,324,372 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1353,092,261 - 53,324,369 (+)EnsemblGRCr8
mRatBN7.21350,545,324 - 50,772,922 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1350,545,836 - 50,770,601 (+)EnsemblmRatBN7.2
Rnor_6.01356,015,813 - 56,242,041 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1356,015,901 - 56,236,677 (+)Ensemblrn6Rnor6.0
Rnor_5.01361,038,636 - 61,263,533 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41352,298,620 - 52,525,392 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1350,826,848 - 51,045,893 (+)NCBICelera
RGSC_v3.11352,452,059 - 52,539,199 (+)NCBI
Cytogenetic Map13q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20937701   PMID:26774822  


Genomics

Comparative Map Data
Dennd1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81353,096,717 - 53,324,372 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1353,092,261 - 53,324,369 (+)EnsemblGRCr8
mRatBN7.21350,545,324 - 50,772,922 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1350,545,836 - 50,770,601 (+)EnsemblmRatBN7.2
Rnor_6.01356,015,813 - 56,242,041 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1356,015,901 - 56,236,677 (+)Ensemblrn6Rnor6.0
Rnor_5.01361,038,636 - 61,263,533 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41352,298,620 - 52,525,392 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1350,826,848 - 51,045,893 (+)NCBICelera
RGSC_v3.11352,452,059 - 52,539,199 (+)NCBI
Cytogenetic Map13q13NCBI
DENND1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381197,504,748 - 197,782,150 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1197,504,748 - 197,775,706 (-)Ensemblhg38GRCh38
GRCh371197,473,878 - 197,744,610 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361195,788,008 - 196,010,947 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341194,253,041 - 194,475,979NCBI
Celera1170,644,089 - 170,867,541 (-)NCBICelera
Cytogenetic Map1q31.3NCBI
HuRef1168,632,607 - 168,900,462 (-)NCBIHuRef
CHM1_11198,896,297 - 199,166,967 (-)NCBICHM1_1
T2T-CHM13v2.01196,766,532 - 197,041,541 (-)NCBIT2T-CHM13v2.0
Dennd1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391138,891,447 - 139,103,781 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1138,891,173 - 139,106,698 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381138,963,709 - 139,176,043 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1138,963,435 - 139,178,960 (+)Ensemblmm10GRCm38
MGSCv371140,860,286 - 141,072,620 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361140,780,197 - 140,880,129 (+)NCBIMGSCv36mm8
MGSCv361139,836,601 - 139,937,379 (+)NCBIMGSCv36mm8
Celera1141,601,415 - 141,811,483 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map160.84NCBI
Dennd1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540634,027,046 - 34,241,737 (-)Ensembl
ChiLan1.0NW_00495540634,021,508 - 34,241,735 (-)NCBIChiLan1.0ChiLan1.0
DENND1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2151,618,074 - 51,869,474 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1151,578,395 - 51,838,287 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01173,102,371 - 173,365,024 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11177,415,682 - 177,676,293 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1177,420,565 - 177,676,293 (-)EnsemblpanPan2panpan1.1
DENND1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.175,008,249 - 5,267,392 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl74,999,430 - 5,262,630 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha74,691,222 - 4,886,756 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.074,822,617 - 4,957,348 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl74,693,827 - 4,951,586 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.174,632,039 - 4,899,335 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.074,732,615 - 4,999,970 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.074,764,682 - 5,032,009 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dennd1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934476,887,099 - 77,113,632 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365676,134,179 - 6,348,086 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365676,131,433 - 6,353,003 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DENND1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1020,395,481 - 20,635,748 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11020,391,507 - 20,635,808 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21025,082,454 - 25,194,513 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DENND1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12531,633,876 - 31,908,207 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2531,640,823 - 31,907,365 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605532,538,275 - 32,815,444 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dennd1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247982,622,379 - 2,838,775 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247982,621,604 - 2,844,370 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Dennd1b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11019,318,255 - 19,530,994 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dennd1b
2175 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:493
Count of miRNA genes:190
Interacting mature miRNAs:219
Transcripts:ENSRNOT00000014759, ENSRNOT00000035129, ENSRNOT00000043907, ENSRNOT00000075072
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133379409660914504Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
D13Rat136  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21350,685,290 - 50,685,424 (+)MAPPERmRatBN7.2
Rnor_6.01356,152,373 - 56,152,504NCBIRnor6.0
Rnor_5.01361,175,793 - 61,175,924UniSTSRnor5.0
RGSC_v3.41352,438,251 - 52,438,384UniSTSRGSC3.4
RGSC_v3.41352,438,250 - 52,438,384RGDRGSC3.4
Celera1350,958,243 - 50,958,376UniSTS
RGSC_v3.11352,452,330 - 52,452,464RGD
Cytogenetic Map13q13UniSTS
RH131630  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21350,622,006 - 50,622,186 (+)MAPPERmRatBN7.2
Rnor_6.01356,092,430 - 56,092,609NCBIRnor6.0
Rnor_5.01361,115,544 - 61,115,723UniSTSRnor5.0
RGSC_v3.41352,375,847 - 52,376,026UniSTSRGSC3.4
Celera1350,902,058 - 50,902,237UniSTS
RH 3.4 Map11513.8UniSTS
Cytogenetic Map13q13UniSTS
fa07h10.s1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21350,567,719 - 50,569,156 (+)MAPPERmRatBN7.2
Rnor_6.01356,037,685 - 56,039,121NCBIRnor6.0
Rnor_5.01361,060,854 - 61,062,290UniSTSRnor5.0
RGSC_v3.41352,321,311 - 52,322,747UniSTSRGSC3.4
Celera1350,848,586 - 50,850,022UniSTS
Cytogenetic Map13q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001430770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003751245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003752644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000035129   ⟹   ENSRNOP00000037059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1353,097,239 - 53,324,369 (+)Ensembl
mRatBN7.2 Ensembl1350,545,836 - 50,770,601 (+)Ensembl
Rnor_6.0 Ensembl1356,096,834 - 56,204,346 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000043907   ⟹   ENSRNOP00000043081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1353,097,239 - 53,324,369 (+)Ensembl
mRatBN7.2 Ensembl1350,546,125 - 50,770,601 (+)Ensembl
Rnor_6.0 Ensembl1356,015,901 - 56,236,674 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075072   ⟹   ENSRNOP00000065780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1353,097,050 - 53,324,369 (+)Ensembl
mRatBN7.2 Ensembl1350,735,831 - 50,770,601 (+)Ensembl
Rnor_6.0 Ensembl1356,202,911 - 56,236,677 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094144   ⟹   ENSRNOP00000080096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1353,111,388 - 53,324,369 (+)Ensembl
mRatBN7.2 Ensembl1350,559,657 - 50,770,601 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102009   ⟹   ENSRNOP00000095260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1353,092,261 - 53,324,369 (+)Ensembl
mRatBN7.2 Ensembl1350,548,162 - 50,770,601 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112392   ⟹   ENSRNOP00000082359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1353,098,151 - 53,324,369 (+)Ensembl
mRatBN7.2 Ensembl1350,736,529 - 50,770,601 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000130258   ⟹   ENSRNOP00000112628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1353,097,492 - 53,319,116 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000136226   ⟹   ENSRNOP00000099618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1353,097,493 - 53,319,117 (+)Ensembl
RefSeq Acc Id: XM_003751244   ⟹   XP_003751292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,097,240 - 53,324,372 (+)NCBI
mRatBN7.21350,545,785 - 50,772,922 (+)NCBI
Rnor_6.01356,015,813 - 56,242,041 (+)NCBI
Rnor_5.01361,038,636 - 61,263,533 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003751245   ⟹   XP_003751293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,097,240 - 53,324,372 (+)NCBI
mRatBN7.21350,545,785 - 50,772,922 (+)NCBI
Rnor_6.01356,015,813 - 56,242,041 (+)NCBI
Rnor_5.01361,038,636 - 61,263,533 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769580   ⟹   XP_008767802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,097,289 - 53,324,372 (+)NCBI
mRatBN7.21350,545,779 - 50,772,922 (+)NCBI
Rnor_6.01356,015,813 - 56,242,041 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091333   ⟹   XP_038947261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,096,762 - 53,324,372 (+)NCBI
mRatBN7.21350,545,324 - 50,772,922 (+)NCBI
RefSeq Acc Id: XM_039091335   ⟹   XP_038947263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,099,567 - 53,304,447 (+)NCBI
mRatBN7.21350,548,113 - 50,758,825 (+)NCBI
RefSeq Acc Id: XM_039091336   ⟹   XP_038947264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,179,773 - 53,324,372 (+)NCBI
mRatBN7.21350,628,319 - 50,772,922 (+)NCBI
RefSeq Acc Id: XM_063272682   ⟹   XP_063128752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,098,476 - 53,324,372 (+)NCBI
RefSeq Acc Id: XM_063272683   ⟹   XP_063128753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,097,495 - 53,324,372 (+)NCBI
RefSeq Acc Id: XM_063272684   ⟹   XP_063128754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,096,717 - 53,324,372 (+)NCBI
RefSeq Acc Id: XM_063272685   ⟹   XP_063128755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81353,098,533 - 53,324,372 (+)NCBI
RefSeq Acc Id: XP_003751293   ⟸   XM_003751245
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003751292   ⟸   XM_003751244
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008767802   ⟸   XM_008769580
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G654 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000065780   ⟸   ENSRNOT00000075072
Ensembl Acc Id: ENSRNOP00000043081   ⟸   ENSRNOT00000043907
Ensembl Acc Id: ENSRNOP00000037059   ⟸   ENSRNOT00000035129
RefSeq Acc Id: XP_038947261   ⟸   XM_039091333
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AN53 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947263   ⟸   XM_039091335
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038947264   ⟸   XM_039091336
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000095260   ⟸   ENSRNOT00000102009
Ensembl Acc Id: ENSRNOP00000080096   ⟸   ENSRNOT00000094144
Ensembl Acc Id: ENSRNOP00000082359   ⟸   ENSRNOT00000112392
RefSeq Acc Id: XP_063128754   ⟸   XM_063272684
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G654 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128753   ⟸   XM_063272683
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AN53 (UniProtKB/TrEMBL),   D3Z8F6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128752   ⟸   XM_063272682
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063128755   ⟸   XM_063272685
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G654 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112628   ⟸   ENSRNOT00000130258
Ensembl Acc Id: ENSRNOP00000099618   ⟸   ENSRNOT00000136226
Protein Domains
uDENN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8F6-F1-model_v2 AlphaFold D3Z8F6 1-760 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698862
Promoter ID:EPDNEW_R9386
Type:initiation region
Name:Dennd1b_1
Description:DENN domain containing 1B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01356,015,810 - 56,015,870EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308441 AgrOrtholog
BioCyc Gene G2FUF-18081 BioCyc
Ensembl Genes ENSRNOG00000011063 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035129 ENTREZGENE
  ENSRNOT00000035129.7 UniProtKB/TrEMBL
  ENSRNOT00000043907 ENTREZGENE
  ENSRNOT00000043907.8 UniProtKB/TrEMBL
  ENSRNOT00000075072.3 UniProtKB/TrEMBL
  ENSRNOT00000094144 ENTREZGENE
  ENSRNOT00000094144.2 UniProtKB/TrEMBL
  ENSRNOT00000102009.2 UniProtKB/TrEMBL
  ENSRNOT00000112392 ENTREZGENE
  ENSRNOT00000112392.2 UniProtKB/TrEMBL
  ENSRNOT00000130258.1 UniProtKB/TrEMBL
  ENSRNOT00000136226 ENTREZGENE
  ENSRNOT00000136226.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.200 UniProtKB/TrEMBL
  3.40.50.11500 UniProtKB/TrEMBL
  6.10.140.1000 UniProtKB/TrEMBL
InterPro dDENN_dom UniProtKB/TrEMBL
  DENN_C UniProtKB/TrEMBL
  DENN_dom UniProtKB/TrEMBL
  DENND1A/B/C UniProtKB/TrEMBL
  Tripartite_DENN UniProtKB/TrEMBL
  uDENN_dom UniProtKB/TrEMBL
NCBI Gene 289051 ENTREZGENE
PANTHER DENN DOMAIN-CONTAINING PROTEIN 1B UniProtKB/TrEMBL
  PTHR13196 UniProtKB/TrEMBL
Pfam dDENN UniProtKB/TrEMBL
  DENN UniProtKB/TrEMBL
  uDENN UniProtKB/TrEMBL
PhenoGen Dennd1b PhenoGen
PROSITE DENN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011063 RatGTEx
SMART dDENN UniProtKB/TrEMBL
  DENN UniProtKB/TrEMBL
  uDENN UniProtKB/TrEMBL
UniProt A0A8I6AN53 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G654 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G9D3_RAT UniProtKB/TrEMBL
  A0ABK0L7E9_RAT UniProtKB/TrEMBL
  A0ABK0M8V7_RAT UniProtKB/TrEMBL
  D3Z8F6 ENTREZGENE, UniProtKB/TrEMBL
  F1M3B0 ENTREZGENE, UniProtKB/TrEMBL
  M0R8I4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Dennd1b  DENN domain containing 1B  Dennd1b  DENN/MADD domain containing 1B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Dennd1b  DENN/MADD domain containing 1B  Fam31b_predicted  family with sequence similarity 31, member B (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Fam31b_predicted  family with sequence similarity 31, member B (predicted)      Symbol and Name status set to approved 70820 APPROVED