C15h14orf119 (similar to human chromosome 14 open reading frame 119) - Rat Genome Database

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Gene: C15h14orf119 (similar to human chromosome 14 open reading frame 119) Rattus norvegicus
Analyze
Symbol: C15h14orf119
Name: similar to human chromosome 14 open reading frame 119
RGD ID: 1308430
Description: Orthologous to human C14orf119 (chromosome 14 open reading frame 119); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC361038; LOC361038; RGD1308430; similar to 1700123O20Rik protein; uncharacterized protein C14orf119 homolog; uncharacterized protein LOC361038
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Kidm51
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,116,220 - 32,121,425 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1532,116,021 - 32,122,416 (+)EnsemblGRCr8
mRatBN7.21528,146,368 - 28,151,422 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,146,333 - 28,155,180 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1529,986,106 - 29,990,148 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,133,320 - 31,137,362 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,383,080 - 29,387,129 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,333,009 - 33,337,677 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,333,420 - 33,337,674 (+)Ensemblrn6Rnor6.0
Rnor_5.01537,217,882 - 37,222,473 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41532,764,912 - 32,769,169 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1527,725,336 - 27,729,593 (+)NCBICelera
RGSC_v3.11532,780,673 - 32,784,876 (+)NCBI
Cytogenetic Map15p13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
C15h14orf119
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,116,220 - 32,121,425 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1532,116,021 - 32,122,416 (+)EnsemblGRCr8
mRatBN7.21528,146,368 - 28,151,422 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,146,333 - 28,155,180 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1529,986,106 - 29,990,148 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,133,320 - 31,137,362 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,383,080 - 29,387,129 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,333,009 - 33,337,677 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,333,420 - 33,337,674 (+)Ensemblrn6Rnor6.0
Rnor_5.01537,217,882 - 37,222,473 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41532,764,912 - 32,769,169 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1527,725,336 - 27,729,593 (+)NCBICelera
RGSC_v3.11532,780,673 - 32,784,876 (+)NCBI
Cytogenetic Map15p13NCBI
C14orf119
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,095,505 - 23,100,456 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1423,094,692 - 23,100,456 (+)Ensemblhg38GRCh38
GRCh371423,564,714 - 23,569,665 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,634,628 - 22,639,505 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341422,634,627 - 22,639,504NCBI
Celera143,427,493 - 3,432,371 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,681,599 - 3,686,579 (+)NCBIHuRef
CHM1_11423,563,312 - 23,568,282 (+)NCBICHM1_1
T2T-CHM13v2.01417,296,149 - 17,301,091 (+)NCBIT2T-CHM13v2.0
1700123O20Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,923,628 - 54,928,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,923,673 - 54,928,198 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381454,686,171 - 54,690,742 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,686,216 - 54,690,741 (+)Ensemblmm10GRCm38
MGSCv371455,305,008 - 55,309,579 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361453,640,421 - 53,644,945 (+)NCBIMGSCv36mm8
Celera1452,474,405 - 52,478,976 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.89NCBI
CUNH14orf119
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,203,604 - 37,206,426 (-)Ensembl
ChiLan1.0NW_00495540937,203,604 - 37,206,853 (-)NCBIChiLan1.0ChiLan1.0
C15H14orf119
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,528,262 - 24,531,436 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,744,816 - 23,747,925 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,915,675 - 3,918,781 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,011,957 - 22,015,068 (+)NCBIPanPan1.1PanPan1.1panPan2
C8H14orf119
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,405,418 - 3,408,966 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,353,696 - 3,357,380 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.083,512,849 - 3,515,977 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,512,751 - 3,516,878 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl2537,321,260 - 37,321,688 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,204,446 - 3,208,122 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,265,460 - 3,269,144 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,527,550 - 3,531,600 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CUNH14orf119
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,161,216 - 35,164,240 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,225,863 - 1,226,291 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,219,245 - 1,226,291 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C7H14orf119
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,947,769 - 75,950,956 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1775,947,765 - 75,951,047 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2781,283,562 - 81,286,796 (-)NCBISscrofa10.2Sscrofa10.2susScr3
C29H14orf119
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,464,618 - 23,467,719 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605922,949,099 - 22,952,606 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH14orf119
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,441,541 - 9,444,255 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248209,441,533 - 9,445,056 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
C12H14orf119
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11270,309,197 - 70,313,606 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in C15h14orf119
4 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:56
Interacting mature miRNAs:71
Transcripts:ENSRNOT00000049927
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat

Markers in Region
BI274360  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,151,079 - 28,151,182 (+)MAPPERmRatBN7.2
Rnor_6.01533,337,335 - 33,337,437NCBIRnor6.0
Rnor_5.01537,222,131 - 37,222,233UniSTSRnor5.0
RGSC_v3.41532,768,827 - 32,768,929UniSTSRGSC3.4
Celera1527,729,251 - 27,729,353UniSTS
Cytogenetic Map15p13UniSTS
RH129554  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,151,170 - 28,151,377 (+)MAPPERmRatBN7.2
Rnor_6.01533,337,426 - 33,337,632NCBIRnor6.0
Rnor_5.01537,222,222 - 37,222,428UniSTSRnor5.0
RGSC_v3.41532,768,918 - 32,769,124UniSTSRGSC3.4
Celera1527,729,342 - 27,729,548UniSTS
Cytogenetic Map15p13UniSTS
BE106323  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,151,730 - 28,151,881 (+)MAPPERmRatBN7.2
Rnor_6.01533,337,986 - 33,338,136NCBIRnor6.0
Rnor_5.01537,222,782 - 37,222,932UniSTSRnor5.0
RGSC_v3.41532,769,478 - 32,769,628UniSTSRGSC3.4
Celera1527,729,902 - 27,730,052UniSTS
Cytogenetic Map15p13UniSTS
UniSTS:237185  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,150,583 - 28,150,769 (+)MAPPERmRatBN7.2
Rnor_6.01533,336,839 - 33,337,024NCBIRnor6.0
Rnor_5.01537,221,635 - 37,221,820UniSTSRnor5.0
RGSC_v3.41532,768,331 - 32,768,516UniSTSRGSC3.4
Celera1527,728,755 - 27,728,940UniSTS
Cytogenetic Map15p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000049927   ⟹   ENSRNOP00000045776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,117,168 - 32,121,422 (+)Ensembl
mRatBN7.2 Ensembl1528,147,165 - 28,151,419 (+)Ensembl
Rnor_6.0 Ensembl1533,333,420 - 33,337,674 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095147   ⟹   ENSRNOP00000080052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,116,021 - 32,121,918 (+)Ensembl
mRatBN7.2 Ensembl1528,149,486 - 28,151,671 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103734   ⟹   ENSRNOP00000086570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1528,146,333 - 28,155,180 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104680   ⟹   ENSRNOP00000080456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,119,457 - 32,122,416 (+)Ensembl
mRatBN7.2 Ensembl1528,146,333 - 28,152,336 (+)Ensembl
RefSeq Acc Id: NM_001108376   ⟹   NP_001101846
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,117,168 - 32,121,425 (+)NCBI
mRatBN7.21528,147,165 - 28,151,422 (+)NCBI
Rnor_6.01533,333,420 - 33,337,677 (+)NCBI
Rnor_5.01537,217,882 - 37,222,473 (+)NCBI
RGSC_v3.41532,764,912 - 32,769,169 (+)RGD
Celera1527,725,336 - 27,729,593 (+)RGD
Sequence:
RefSeq Acc Id: XM_039093485   ⟹   XP_038949413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,116,220 - 32,121,419 (+)NCBI
mRatBN7.21528,146,368 - 28,151,416 (+)NCBI
RefSeq Acc Id: NP_001101846   ⟸   NM_001108376
- UniProtKB: B0BN25 (UniProtKB/TrEMBL),   A6KGV7 (UniProtKB/TrEMBL),   A0A8I5ZNS3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000045776   ⟸   ENSRNOT00000049927
RefSeq Acc Id: XP_038949413   ⟸   XM_039093485
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000086570   ⟸   ENSRNOT00000103734
Ensembl Acc Id: ENSRNOP00000080052   ⟸   ENSRNOT00000095147
Ensembl Acc Id: ENSRNOP00000080456   ⟸   ENSRNOT00000104680

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BN25-F1-model_v2 AlphaFold B0BN25 1-142 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699658
Promoter ID:EPDNEW_R10181
Type:initiation region
Name:RGD1308430_1
Description:similar to 1700123O20Rik protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01533,333,474 - 33,333,534EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308430 AgrOrtholog
BioCyc Gene G2FUF-13785 BioCyc
Ensembl Genes ENSRNOG00000029146 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049927 ENTREZGENE
  ENSRNOT00000049927.5 UniProtKB/TrEMBL
  ENSRNOT00000095147 ENTREZGENE
  ENSRNOT00000095147.2 UniProtKB/TrEMBL
  ENSRNOT00000104680.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8369089 IMAGE-MGC_LOAD
InterPro DUF4508 UniProtKB/TrEMBL
KEGG Report rno:361038 UniProtKB/TrEMBL
MGC_CLONE MGC:187641 IMAGE-MGC_LOAD
NCBI Gene 361038 ENTREZGENE
PANTHER PTHR16260 UniProtKB/TrEMBL
  SIMILAR TO 1700123O20RIK PROTEIN UniProtKB/TrEMBL
Pfam DUF4508 UniProtKB/TrEMBL
PhenoGen C15h14orf119 PhenoGen
RatGTEx ENSRNOG00000029146 RatGTEx
UniProt A0A8I5ZNS3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABZ3NNJ7_RAT UniProtKB/TrEMBL
  A6KGV7 ENTREZGENE
  B0BN25 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6KGV7 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-27 C15h14orf119  similar to human chromosome 14 open reading frame 119  RGD1308430  similar to 1700123O20Rik protein  Name and Symbol changed 629549 APPROVED
2008-04-30 RGD1308430  similar to 1700123O20Rik protein   RGD1308430_predicted  similar to 1700123O20Rik protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1308430_predicted  similar to 1700123O20Rik protein (predicted)  LOC361038_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361038_predicted  similar to 1700123O20Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL