Ncapg2 (non-SMC condensin II complex, subunit G2) - Rat Genome Database

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Gene: Ncapg2 (non-SMC condensin II complex, subunit G2) Rattus norvegicus
Analyze
Symbol: Ncapg2
Name: non-SMC condensin II complex, subunit G2
RGD ID: 1308406
Description: Predicted to enable bHLH transcription factor binding activity and histone H4K20me1 reader activity. Predicted to be involved in mitotic sister chromatid segregation; positive regulation of chromosome segregation; and positive regulation of chromosome separation. Predicted to act upstream of with a positive effect on erythrocyte differentiation. Predicted to act upstream of with a negative effect on transcription by RNA polymerase II. Predicted to act upstream of or within inner cell mass cell proliferation. Predicted to be located in condensed nuclear chromosome. Predicted to be part of condensin complex. Predicted to be active in nucleus. Orthologous to human NCAPG2 (non-SMC condensin II complex subunit G2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: condensin-2 complex subunit G2; leucine zipper protein 5; LOC362798; Luzp5; RGD1308406; similar to Hypothetical protein FLJ20311
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86143,484,651 - 143,561,850 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6143,485,944 - 143,560,249 (+)EnsemblGRCr8
mRatBN7.26137,342,449 - 137,418,083 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6137,342,943 - 137,415,159 (+)EnsemblmRatBN7.2
Rnor_6.06144,291,313 - 144,362,454 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6144,291,974 - 144,363,947 (+)Ensemblrn6Rnor6.0
Rnor_5.06153,219,779 - 153,291,396 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46143,693,508 - 143,751,084 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6135,005,891 - 135,080,045 (+)NCBICelera
RGSC_v3.16143,699,694 - 143,748,409 (+)NCBI
Cytogenetic Map6q33NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-diaminotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-butoxyethanol  (ISO)
2-palmitoylglycerol  (ISO)
3',5'-cyclic UMP  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arsenite(3-)  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
diallyl trisulfide  (ISO)
dioxygen  (ISO)
Enterolactone  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
lidocaine  (EXP)
lucanthone  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
valproic acid  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14729962   PMID:16673016   PMID:19946888   PMID:20622854   PMID:21795393  


Genomics

Comparative Map Data
Ncapg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86143,484,651 - 143,561,850 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6143,485,944 - 143,560,249 (+)EnsemblGRCr8
mRatBN7.26137,342,449 - 137,418,083 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6137,342,943 - 137,415,159 (+)EnsemblmRatBN7.2
Rnor_6.06144,291,313 - 144,362,454 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6144,291,974 - 144,363,947 (+)Ensemblrn6Rnor6.0
Rnor_5.06153,219,779 - 153,291,396 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46143,693,508 - 143,751,084 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6135,005,891 - 135,080,045 (+)NCBICelera
RGSC_v3.16143,699,694 - 143,748,409 (+)NCBI
Cytogenetic Map6q33NCBI
NCAPG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387158,631,169 - 158,704,804 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7158,628,224 - 158,704,825 (-)Ensemblhg38GRCh38
GRCh377158,423,861 - 158,497,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367158,116,764 - 158,190,281 (-)NCBIBuild 36Build 36hg18NCBI36
Celera7152,856,604 - 152,930,122 (-)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7152,163,223 - 152,236,542 (-)NCBIHuRef
CHM1_17158,432,826 - 158,505,899 (-)NCBICHM1_1
T2T-CHM13v2.07159,858,401 - 159,932,192 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27157,628,658 - 157,701,735 (-)NCBI
Ncapg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912116,368,969 - 116,427,152 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12116,369,022 - 116,427,351 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3812116,405,351 - 116,463,532 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12116,405,402 - 116,463,731 (+)Ensemblmm10GRCm38
MGSCv3712117,643,875 - 117,702,004 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3612116,847,398 - 116,905,738 (+)NCBIMGSCv36mm8
Cytogenetic Map12F2NCBI
cM Map1262.65NCBI
Ncapg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955579895,249 - 955,517 (-)Ensembl
ChiLan1.0NW_004955579896,507 - 955,515 (-)NCBIChiLan1.0ChiLan1.0
NCAPG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26195,118,898 - 195,191,226 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1747,129,161 - 47,201,491 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07150,441,385 - 150,513,391 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17161,905,762 - 161,977,093 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7161,905,762 - 161,977,093 (-)EnsemblpanPan2panpan1.1
NCAPG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11620,649,088 - 20,712,208 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1620,649,489 - 20,712,208 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1621,154,091 - 21,218,358 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01622,380,599 - 22,444,279 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1622,380,583 - 22,444,286 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11620,747,809 - 20,812,041 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01621,332,079 - 21,396,341 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01621,386,219 - 21,450,501 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ncapg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118643,581 - 702,013 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936856567,306 - 625,800 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936856567,765 - 625,745 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAPG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18653,224 - 717,200 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.118653,182 - 713,825 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NCAPG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121126,658,802 - 126,731,005 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21126,658,702 - 126,728,510 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607223,054,778 - 23,128,409 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncapg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624800432,258 - 498,718 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624800432,307 - 494,361 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ncapg2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17119,595,215 - 119,666,092 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:19
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000035255
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6131392689143944780Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat

Markers in Region
RH132799  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26137,415,249 - 137,415,446 (+)MAPPERmRatBN7.2
Rnor_6.06144,360,452 - 144,360,648NCBIRnor6.0
Rnor_5.06153,288,647 - 153,288,843UniSTSRnor5.0
RGSC_v3.46143,763,563 - 143,763,759UniSTSRGSC3.4
Celera6135,078,043 - 135,078,239UniSTS
RH 3.4 Map6919.9UniSTS
Cytogenetic Map6q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 355 192 11 144 80 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001061369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_343124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000035255   ⟹   ENSRNOP00000033392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6143,485,944 - 143,545,764 (+)Ensembl
mRatBN7.2 Ensembl6137,342,943 - 137,415,159 (+)Ensembl
Rnor_6.0 Ensembl6144,291,974 - 144,363,947 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000134706   ⟹   ENSRNOP00000107247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6143,485,944 - 143,545,847 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000141893   ⟹   ENSRNOP00000107065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6143,485,944 - 143,560,249 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000157778   ⟹   ENSRNOP00000106240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6143,485,944 - 143,560,249 (+)Ensembl
RefSeq Acc Id: NM_001427667   ⟹   NP_001414596
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,485,944 - 143,560,249 (+)NCBI
RefSeq Acc Id: XM_039078080   ⟹   XP_038934008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,354 - 143,558,627 (+)NCBI
mRatBN7.26137,343,352 - 137,418,083 (+)NCBI
RefSeq Acc Id: XM_039078081   ⟹   XP_038934009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,375 - 143,558,627 (+)NCBI
mRatBN7.26137,343,353 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078083   ⟹   XP_038934011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,362 - 143,558,627 (+)NCBI
mRatBN7.26137,343,373 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078084   ⟹   XP_038934012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,349 - 143,558,627 (+)NCBI
mRatBN7.26137,343,359 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078085   ⟹   XP_038934013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,016 - 143,558,627 (+)NCBI
mRatBN7.26137,342,449 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078086   ⟹   XP_038934014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,017 - 143,558,627 (+)NCBI
mRatBN7.26137,342,449 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078087   ⟹   XP_038934015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,440 - 143,558,627 (+)NCBI
mRatBN7.26137,343,402 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_039078089   ⟹   XP_038934017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,415 - 143,558,627 (+)NCBI
mRatBN7.26137,343,399 - 137,415,630 (+)NCBI
RefSeq Acc Id: XM_063262156   ⟹   XP_063118226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,485,211 - 143,561,850 (+)NCBI
RefSeq Acc Id: XM_063262157   ⟹   XP_063118227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,485,224 - 143,558,627 (+)NCBI
RefSeq Acc Id: XM_063262158   ⟹   XP_063118228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,484,655 - 143,558,627 (+)NCBI
RefSeq Acc Id: XM_063262159   ⟹   XP_063118229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,484,651 - 143,558,627 (+)NCBI
RefSeq Acc Id: XM_063262160   ⟹   XP_063118230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,350 - 143,558,627 (+)NCBI
RefSeq Acc Id: XM_063262161   ⟹   XP_063118231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,363 - 143,558,627 (+)NCBI
RefSeq Acc Id: XM_063262162   ⟹   XP_063118232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,366 - 143,558,627 (+)NCBI
RefSeq Acc Id: XM_343124   ⟹   XP_343125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,486,354 - 143,558,627 (+)NCBI
mRatBN7.26137,343,352 - 137,415,630 (+)NCBI
Rnor_6.06144,291,933 - 144,362,454 (+)NCBI
Rnor_5.06153,219,779 - 153,291,396 (+)NCBI
RGSC_v3.46143,693,508 - 143,751,084 (+)RGD
Sequence:
RefSeq Acc Id: XR_010052125
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86143,485,191 - 143,537,536 (+)NCBI
RefSeq Acc Id: XP_343125   ⟸   XM_343124
- Peptide Label: isoform X5
- UniProtKB: D4AAL2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000033392   ⟸   ENSRNOT00000035255
RefSeq Acc Id: XP_038934013   ⟸   XM_039078085
- Peptide Label: isoform X3
- UniProtKB: D4AAL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934014   ⟸   XM_039078086
- Peptide Label: isoform X3
- UniProtKB: D4AAL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934008   ⟸   XM_039078080
- Peptide Label: isoform X3
- UniProtKB: D4AAL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934009   ⟸   XM_039078081
- Peptide Label: isoform X3
- UniProtKB: D4AAL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934012   ⟸   XM_039078084
- Peptide Label: isoform X3
- UniProtKB: D4AAL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934011   ⟸   XM_039078083
- Peptide Label: isoform X3
- UniProtKB: D4AAL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934017   ⟸   XM_039078089
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038934015   ⟸   XM_039078087
- Peptide Label: isoform X3
- UniProtKB: D4AAL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118229   ⟸   XM_063262159
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063118228   ⟸   XM_063262158
- Peptide Label: isoform X3
- UniProtKB: D4AAL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118226   ⟸   XM_063262156
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063118227   ⟸   XM_063262157
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001414596   ⟸   NM_001427667
RefSeq Acc Id: XP_063118230   ⟸   XM_063262160
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063118231   ⟸   XM_063262161
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063118232   ⟸   XM_063262162
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000106240   ⟸   ENSRNOT00000157778
Ensembl Acc Id: ENSRNOP00000107065   ⟸   ENSRNOT00000141893
Ensembl Acc Id: ENSRNOP00000107247   ⟸   ENSRNOT00000134706

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AAL2-F1-model_v2 AlphaFold D4AAL2 1-1137 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694913
Promoter ID:EPDNEW_R5433
Type:multiple initiation site
Name:Ncapg2_1
Description:non-SMC condensin II complex, subunit G2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06144,291,993 - 144,292,053EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308406 AgrOrtholog
BioCyc Gene G2FUF-35511 BioCyc
Ensembl Genes ENSRNOG00000004968 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035255.7 UniProtKB/TrEMBL
  ENSRNOT00000134706.1 UniProtKB/TrEMBL
  ENSRNOT00000141893 ENTREZGENE
  ENSRNOT00000141893.1 UniProtKB/TrEMBL
  ENSRNOT00000157778 ENTREZGENE
  ENSRNOT00000157778.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Condensin2_G2 UniProtKB/TrEMBL
NCBI Gene 362798 ENTREZGENE
PANTHER CONDENSIN-2 COMPLEX SUBUNIT G2 UniProtKB/TrEMBL
  CONDENSIN-2 COMPLEX SUBUNIT G2 UniProtKB/TrEMBL
Pfam Condensin2nSMC UniProtKB/TrEMBL
PhenoGen Ncapg2 PhenoGen
RatGTEx ENSRNOG00000004968 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0ABK0LVF6_RAT UniProtKB/TrEMBL
  A0ABK0LYU6_RAT UniProtKB/TrEMBL
  A0ABK0LZ90_RAT UniProtKB/TrEMBL
  D4AAL2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Ncapg2  non-SMC condensin II complex, subunit G2  Luzp5  leucine zipper protein 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Luzp5  leucine zipper protein 5   Luzp5_predicted  leucine zipper protein 5 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Luzp5_predicted  leucine zipper protein 5 (predicted)  RGD1308406_predicted  similar to Hypothetical protein FLJ20311 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1308406_predicted  similar to Hypothetical protein FLJ20311 (predicted)  LOC362798_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362798_predicted  similar to Hypothetical protein FLJ20311 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL