Mzf1 (myeloid zinc finger 1) - Rat Genome Database

Name: Mzf1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Mzf1 (myeloid zinc finger 1) Rattus norvegicus

Analyze

Symbol:

Mzf1

Name:

myeloid zinc finger 1

RGD ID:

1308391

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein homodimerization activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Orthologous to human MZF1 (myeloid zinc finger 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC361508; Zfp98; zinc finger protein 98

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MZF1 (myeloid zinc finger 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Mzf1 (myeloid zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mzf1 (myeloid zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MZF1 (myeloid zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MZF1 (myeloid zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mzf1 (myeloid zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MZF1 (myeloid zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MZF1 (myeloid zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MZF1 (myeloid zinc finger 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mzf1 (myeloid zinc finger 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ZAP1	Alliance	DIOPT (Hieranoid\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	82,742,709 - 82,755,069 (-)	NCBI		GRCr8
mRatBN7.2	1	73,670,522 - 73,682,885 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	73,670,541 - 73,681,635 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	79,050,939 - 79,062,048 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	87,615,280 - 87,626,389 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	80,806,021 - 80,817,130 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	65,520,827 - 65,533,233 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	65,522,118 - 65,533,212 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	66,332,120 - 66,344,464 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	72,870,145 - 72,881,239 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	72,949,477 - 72,960,898 (+)	NCBI
Celera	1	60,158,171 - 60,169,264 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butan-1-ol (ISO)

butanal (ISO)

calcitriol (ISO)

choline (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dorsomorphin (ISO)

elemental selenium (ISO)

ethanol (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

furan (EXP)

gallic acid (ISO)

gentamycin (EXP)

isobutanol (ISO)

L-methionine (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methimazole (EXP)

phorbol 13-acetate 12-myristate (ISO)

rotenone (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sulfadimethoxine (EXP)

sulindac (EXP)

thimerosal (ISO)

triptonide (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (IBA,ISO)

Cellular Component

nucleoplasm (ISO)

nucleus (IEA)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

protein binding (ISO)

protein homodimerization activity (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

transcription cis-regulatory region binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7579328	PMID:15541732	PMID:16950398	PMID:25630025	PMID:31582966

Genomics

Comparative Map Data

Mzf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	82,742,709 - 82,755,069 (-)	NCBI		GRCr8
mRatBN7.2	1	73,670,522 - 73,682,885 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	73,670,541 - 73,681,635 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	79,050,939 - 79,062,048 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	87,615,280 - 87,626,389 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	80,806,021 - 80,817,130 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	65,520,827 - 65,533,233 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	65,522,118 - 65,533,212 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	66,332,120 - 66,344,464 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	72,870,145 - 72,881,239 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	72,949,477 - 72,960,898 (+)	NCBI
Celera	1	60,158,171 - 60,169,264 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

MZF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	58,561,932 - 58,573,573 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	58,561,931 - 58,573,575 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	59,073,299 - 59,084,940 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	63,765,096 - 63,776,754 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	63,765,096 - 63,776,754	NCBI
Celera	19	56,116,463 - 56,127,681 (-)	NCBI		Celera
Cytogenetic Map	19	q13.43	NCBI
HuRef	19	55,383,492 - 55,395,145 (-)	NCBI		HuRef
CHM1_1	19	59,067,113 - 59,078,772 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	61,659,609 - 61,672,553 (-)	NCBI		T2T-CHM13v2.0

Mzf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	12,777,074 - 12,792,244 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	12,776,230 - 12,788,691 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	13,042,303 - 13,054,764 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	13,042,303 - 13,054,764 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	13,627,652 - 13,640,113 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	11,943,329 - 11,954,844 (-)	NCBI		MGSCv36	mm8
Celera	7	10,669,491 - 10,681,939 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	7.73	NCBI

Mzf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955584	1,167,428 - 1,174,434 (-)	NCBI	ChiLan1.0	ChiLan1.0

MZF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	64,847,739 - 64,857,878 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	66,630,591 - 66,640,838 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	55,575,212 - 55,585,473 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	64,388,496 - 64,399,874 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	64,388,496 - 64,398,938 (-)	Ensembl	panpan1.1		panPan2

MZF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	99,387,780 - 99,398,806 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	99,383,711 - 99,397,388 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	99,786,019 - 99,795,978 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	100,000,874 - 100,010,833 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	99,646,239 - 99,656,198 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	99,358,856 - 99,369,028 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	100,113,708 - 100,123,667 (+)	NCBI		UU_Cfam_GSD_1.0

Mzf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	217,963,994 - 217,975,466 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937062	142,383 - 153,480 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004937062	142,600 - 155,836 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MZF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,111,068 - 63,123,082 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,112,996 - 63,124,025 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

MZF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	50,837,680 - 50,849,283 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	4,167,836 - 4,179,580 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Mzf1
42 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	99
Count of miRNA genes:	90
Interacting mature miRNAs:	93
Transcripts:	ENSRNOT00000058563
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	28879780	78430678	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	33449848	78449848	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	33449848	78449848	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	34836858	79836858	Rat
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	35239598	78430678	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	35239598	78430678	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	45803140	78430678	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49361465	82174945	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53895117	82174945	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53895117	82174945	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	72197680	90508767	Rat

Markers in Region

PMC312729P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	73,672,396 - 73,673,001 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	65,530,752 - 65,531,356	NCBI	Rnor6.0
Rnor_5.0	1	66,341,985 - 66,342,589	UniSTS	Rnor5.0
RGSC_v3.4	1	72,878,779 - 72,879,383	UniSTS	RGSC3.4
Celera	1	60,166,804 - 60,167,408	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									54		16
Low	2	36	27	12	18	12	2	2	20	35	25	11	2
Below cutoff	1	7	30	29	1	29	6	9					6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000058563 ⟹ ENSRNOP00000055361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	73,670,541 - 73,681,635 (-)	Ensembl
Rnor_6.0 Ensembl	1	65,522,118 - 65,533,212 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105137 ⟹ ENSRNOP00000097758

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	73,672,808 - 73,681,635 (-)	Ensembl

RefSeq Acc Id:

NM_001108470 ⟹ NP_001101940

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,742,726 - 82,753,820 (-)	NCBI
mRatBN7.2	1	73,670,541 - 73,681,635 (-)	NCBI
Rnor_6.0	1	65,522,118 - 65,533,212 (+)	NCBI
Rnor_5.0	1	66,332,120 - 66,344,464 (+)	NCBI
RGSC_v3.4	1	72,870,145 - 72,881,239 (+)	RGD
Celera	1	60,158,171 - 60,169,264 (+)	RGD

Sequence:

show sequence

GTGGAGTAGGACTGTCCCCTTGATACCACATTGGGATGGGAATGTTCGGGCCTGAGAGAGGGGC
CAAGTCCAAGACTGGTAGAAAACATTAAGGTTCAGTTATTGGGAGTCCGGGAGGAGGCAGCAGT
GGTAATGCAAGTAGAGAAGCAGCTGCTGCTATAGAAAATAGGATTTAAGGAAGAGAAATATTTC
TAAGCTTAAGCAACAGCCTGTATTTAGAACAGAGTAAGCTACCAGACCTGACTGAAATGAGGTC
TACAAAGCACGTGGCTCATATAGAGTTCCAAAGGGACTCTGGGGAGTGCCTGTTCCCTCAGATG
TTCTCCTCATGGAGAAGGTCTCAGGATCACAACAGCGTGTGGTAGGCACTCGGTAAACATTCAC
TGCCCCTGGCTGTCCTTACTTCACACGCCTCATACTATTCCTTCCCTAGGGACAGACACTGGCC
TCAAAGACCTGATCTGGTTCTCCTGATGAAACCCATTGTGCCAGACTCCTCAGGCCGTGCACCC
CCAGAAAATGAGCCTGCTGTGGTGAAGCTGGAGGACTCTGACAACTACGATAAGAGAGAAGATA
CACTGTGGGACCCAGGCCCTGAAGCTGCACGTCTACGCTTCCGGTGCTTTCGGTATGAGGAGGC
AATAGGTCCTCAGGAAGCCCTGGCTCAGCTCCGAGAACTGTGTCACCAGTGGCTACGTCCAGAG
GTACATTCCAAGGAACAGATCCTGGAACTTTTGGTGCTGGAGCAGTTCCTAGGTGCACTGCCTT
CTGAGATCCAGGCCCGTGTGCAAGAGCAGTGGCCAGGCAGCCCTGAAGAGGCTGCTGCCTTGGT
TGACAGACTTCGATGGGAGCTTGATGGACCTCGGAAATGGGTCACGGTCCAGGTACAGGGCAAG
GAGGTCCTATCAGAGAAGATGGAACCTTCCAGCTTCCAGCCTAGACCTCAAGTCAAGCTTCAGA
CTCCAGAGGCTGGGTCTGAGACTACCCCAGGGGCCACGCAGGAATTGCCGCTGGACCTACAAAT
GAAAGAGGAGACAGAGTTGATGGAGAATCCAGAGCTCCTGGAGTCTGAGCCTCTTTCTGCTGCT
CAAGAGGCTGCAGCCACTCTCCTACCTAAGGTGGCCCAGGGCCATGGGATAGCACTGGACCAGA
CCTCTCCTCACAGCGACACTGAACCTGATGTGCCCCCATGGAGCGAGGACCCTATGCCCCTGTG
GCATGAGGAAGTAGAAGGCATCTTGTCGCCAGGGTTCACGCTGCAGATGGACAGCATCACAGCA
GAGCCAGATACGGTGAGCCCCCACCTCCATGTCCCCTGGGATCTGGACATGGCTAGCCTCTCTG
GACAGATGCAGTCCCCTACCAGAGAAGGTGGCTTTGCCCATGCCCTCGTACTCCCCAGCGATCC
AGGAAGTGAACAGGACCCTGCCTGTGAGGATCCCTGCCCCAGTGTGGGCCCAGCACTGGTGGCG
ACTCGCTGGCATGCCCCAAGGGACCGGAGCCAGGGCCACCCTAGCACAGGGACTGGAGTGATGC
GAGGCGGCCGCTGCGACGTGTGTGGCAAGGTATTCAGCCAGCGAAGCAATCTGCTGCGGCACCA
GAAGATCCACACAGGCGAGAGACCGTTCGTGTGTGGCGAGTGTGGCCGAAGTTTCAGCCGCAGC
TCTCACCTGCTGCGCCACCAACTCACGCATACTGAGGAACGGCCTTTCGTGTGCCGCGACTGTG
GCCAAGGCTTCGTGCGCAGCGCCCGCCTGGAGGAGCATCGGCGCGTGCACACGGGCGAGCAGCC
GTTCCGCTGCGCAGAGTGCGGCCAGAGCTTTCGGCAGCGCTCCAACCTACTGCAGCACCAGCGC
ATCCACGGTGACCCGCCAGGTCCGGCGCCGCCCGTCCGGTCCCTCGCTGGAGTGCCCGAGCCTC
CGGGCCCCTTCCCTTGCAGCGAGTGCTGCGAGAGCTTCCCACGACGCGCAGTACTGCTCGAGCA
CCAAGCGGTGCACACCGGAGACAAGTCCTTCGGATGCGTGGAGTGCGGCGAGCGCTTCGGCCGC
CGCTCGGTGCTGCTGCAGCATCGGCGCGTGCATAGCGGCGAACGACCTTTCGCATGTGCCGAGT
GCGGTCAAAGCTTCCGGCAGCGCTCCAACCTCACCCAGCACCGGCGCATCCACACCGGCGAGCG
GCCCTTCGCCTGCACAGAATGTGGCAAGGCCTTCCGCCAGCGGCCCACTCTCACGCAGCACCTG
CGTGTGCACACCGGTGAGAAGCCCTTCGCCTGCCCCGAGTGCGGCCAGCGCTTCAGCCAGCGAC
TCAAGCTCACACGCCACCAAAGGACCCATACGGGCGAGAAGCCCTACCGCTGCAGTGAATGCGG
CCTCGGTTTCACGCAGGTGTCTCGGCTCACCGAGCACCAGCGCATCCACACAGGTGAGCGGCCT
TTCGCCTGTCCCGAATGTGGCCAGAGCTTCCGGCAGCACGCCAACCTCATCCAGCACCGGCGCA
TCCATACAGGCGAGCGGCCCTACGCGTGTCCCGAGTGTGGCAAGGCCTTCCGCCAGCGGCCCAC
GCTCACGCAGCACCTGCGCACCCACCGGCGCGAAAAGCCCTTCGCCTGCCAGGACTGTGGCCGC
CGCTTTCACCAGAGCACCAAGCTCATCCAACATCAACGCATCCACAGCACTGAGTAGCTGTACA
GCACTGAGTAGGTCAAAACACCTCATTAGGTTGTTGTGAGGCTGCCATCTTCCAACAGGCCCAA
GTAGAGCCTTCAGTAGGTGCTCAATAAATAGATAATGCTTCCCCAACCTTACCGCAGTTTCCAT
GCTGGTATAAGCTCTGCACACACGGCTGCCAGGGGGAGGCTACACACCTCCTTCCACAGTAGCA
CTACCACACAATACTTCTGGCTTACGCAGAGGGGATGCCCAGCCTCAGATGGGGCAGAGCAGCC
ACATTCACAAAGAAGGAAAGGGTTCTTTACGTCTGCTATGGGTCTAGTCAAGAGAGAGGTCTAC
CAAGTATGTCACTGGTGGGTGACTGAAAAGGGTAGTCCAGCTGGGTGAGGTAGTACACACATTT
AGCCCTAGCATTCAGGAGGCTGAGACAGGATTGCATTGAGTTTGAGTTCAGTATGGACAACACC
ATAAGATGTCATTTCAAAAGCACACATTGAGGTGGCACACACGTGTGATCCCAGCACTTGGGGA
CAAAAAGATAATTGCCAAAAGTTCAACAGATAAGTCTATGTAACAAGTTCCTAGATGGCCAGAG
TTGCATGGTGAGAACCTATCAAACAAACAAACAAAAAACCAACAACAGAAACAGAAAATACAAA
CGTGGTGGTGTGATGGCACAAGATTTGTAACCATTCCAGCTATTCAGGAGGCTGAGGTGGGTGA
ACTGCTATTTCAACGCCTGCTTGGGGCGGGGCCTTTGCAGTGGGATAGTTCAGAGGTAACACTG
CTTGTCATGAAGCCTGATGACCTGAGTTTGAACCCTGGAACCCACATGTTGGAAGGAGACAACC
AATTCCTGAAAGTTGTCCTCTGACCTCCACAATCTGTGTTTCCTGGGTTGTTTTGCACATGCAC
ATACACAAGTAAATAAATG

hide sequence

RefSeq Acc Id:

XM_006228116 ⟹ XP_006228178

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	82,742,709 - 82,755,069 (-)	NCBI
mRatBN7.2	1	73,670,522 - 73,682,882 (-)	NCBI
Rnor_6.0	1	65,520,830 - 65,533,233 (+)	NCBI
Rnor_5.0	1	66,332,120 - 66,344,464 (+)	NCBI

Sequence:

show sequence

CCAGAGAGCATTTCGTTAAACCTTTCTCTGGGTTCAGAAGCTAGCCCAGCGGACGCGCCTCCCG
AACCGTGGTTGCCATGGAGACGGAGAGGCTGACGGCGTCCGAGTGAGAGCGGTGATTGGTGCAG
AACCCTGCAAATCCTGGGAAGGCCTGTAGAGAACTGACCGAGAAAAAAAAAAAATGTGGTGGGG
GGCATGCGCGGTGTGGAAGGCGGTGCTACCATCTGTTGCCCCCCGAGAGGATTGTGCACGTCGA
CGGGGCCCTGACGCCTGGATTCGAGACGGGGAGTGTGGGAAGAGACGGCCAGGAGTGCGACCTG
ATTATTGCGACCAGCGCAATCCCTTGGGGACGGGAAGAAGGGGACAGACACTGGCCTCAAAGAC
CTGATCTGGTTCTCCTGATGAAACCCATTGTGCCAGACTCCTCAGGCCGTGCACCCCCAGAAAA
TGAGCCTGCTGTGGTGAAGCTGGAGGACTCTGACAACTACGATAAGAGAGAAGATACACTGTGG
GACCCAGGCCCTGAAGCTGCACGTCTACGCTTCCGGTGCTTTCGGTATGAGGAGGCAATAGGTC
CTCAGGAAGCCCTGGCTCAGCTCCGAGAACTGTGTCACCAGTGGCTACGTCCAGAGGTACATTC
CAAGGAACAGATCCTGGAACTTTTGGTGCTGGAGCAGTTCCTAGGTGCACTGCCTTCTGAGATC
CAGGCCCGTGTGCAAGAGCAGTGGCCAGGCAGCCCTGAAGAGGCTGCTGCCTTGGTTGACAGAC
TTCGATGGGAGCTTGATGGACCTCGGAAATGGGTCACGGTCCAGGTACAGGGCAAGGAGGTCCT
ATCAGAGAAGATGGAACCTTCCAGCTTCCAGCCTAGACCTCAAGTCAAGCTTCAGACTCCAGAG
GCTGGGTCTGAGACTACCCCAGGGGCCACGCAGGAATTGCCGCTGGACCTACAAATGAAAGAGG
AGACAGAGTTGATGGAGAATCCAGAGCTCCTGGAGTCTGAGCCTCTTTCTGCTGCTCAAGAGGC
TGCAGCCACTCTCCTACCTAAGGTGGCCCAGGGCCATGGGATAGCACTGGACCAGACCTCTCCT
CACAGCGACACTGAACCTGATGTGCCCCCATGGAGCGAGGACCCTATGCCCCTGTGGCATGAGG
AAGTAGAAGGCATCTTGTCGCCAGGGTTCACGCTGCAGATGGACAGCATCACAGCAGAGCCAGA
TACGGTGAGCCCCCACCTCCATGTCCCCTGGGATCTGGACATGGCTAGCCTCTCTGGACAGATG
CAGTCCCCTACCAGAGAAGGTGGCTTTGCCCATGCCCTCGTACTCCCCAGCGATCCAGGAAGTG
AACAGGACCCTGCCTGTGAGGATCCCTGCCCCAGTGTGGGCCCAGCACTGGTGGCGACTCGCTG
GCATGCCCCAAGGGACCGGAGCCAGGGCCACCCTAGCACAGGGACTGGAGTGATGCGAGGCGGC
CGCTGCGACGTGTGTGGCAAGGTATTCAGCCAGCGAAGCAATCTGCTGCGGCACCAGAAGATCC
ACACAGGCGAGAGACCGTTCGTGTGTGGCGAGTGTGGCCGAAGTTTCAGCCGCAGCTCTCACCT
GCTGCGCCACCAACTCACGCATACTGAGGAACGGCCTTTCGTGTGCCGCGACTGTGGCCAAGGC
TTCGTGCGCAGCGCCCGCCTGGAGGAGCATCGGCGCGTGCACACGGGCGAGCAGCCGTTCCGCT
GCGCAGAGTGCGGCCAGAGCTTTCGGCAGCGCTCCAACCTACTGCAGCACCAGCGCATCCACGG
TGACCCGCCAGGTCCGGCGCCGCCCGTCCGGTCCCTCGCTGGAGTGCCCGAGCCTCCGGGCCCC
TTCCCTTGCAGCGAGTGCTGCGAGAGCTTCCCACGACGCGCAGTACTGCTCGAGCACCAAGCGG
TGCACACCGGAGACAAGTCCTTCGGATGCGTGGAGTGCGGCGAGCGCTTCGGCCGCCGCTCGGT
GCTGCTGCAGCATCGGCGCGTGCATAGCGGCGAACGACCTTTCGCATGTGCCGAGTGCGGTCAA
AGCTTCCGGCAGCGCTCCAACCTCACCCAGCACCGGCGCATCCACACCGGCGAGCGGCCCTTCG
CCTGCACAGAATGTGGCAAGGCCTTCCGCCAGCGGCCCACTCTCACGCAGCACCTGCGTGTGCA
CACCGGTGAGAAGCCCTTCGCCTGCCCCGAGTGCGGCCAGCGCTTCAGCCAGCGACTCAAGCTC
ACACGCCACCAAAGGACCCATACGGGCGAGAAGCCCTACCGCTGCAGTGAATGCGGCCTCGGTT
TCACGCAGGTGTCTCGGCTCACCGAGCACCAGCGCATCCACACAGGTGAGCGGCCTTTCGCCTG
TCCCGAATGTGGCCAGAGCTTCCGGCAGCACGCCAACCTCATCCAGCACCGGCGCATCCATACA
GGCGAGCGGCCCTACGCGTGTCCCGAGTGTGGCAAGGCCTTCCGCCAGCGGCCCACGCTCACGC
AGCACCTGCGCACCCACCGGCGCGAAAAGCCCTTCGCCTGCCAGGACTGTGGCCGCCGCTTTCA
CCAGAGCACCAAGCTCATCCAACATCAACGCATCCACAGCACTGAGTAGCTGTACAGCACTGAG
TAGGTCAAAACACCTCATTAGGTTGTTGTGAGGCTGCCATCTTCCAACAGGCCCAAGTAGAGCC
TTCAGTAGGTGCTCAATAAATAGATAATGCTTCCCCAACCTTACCGCAGTTTCCATGCTGGTAT
AAGCTCTGCACACACGGCTGCCAGGGGGAGGCTACACACCTCCTTCCACAGTAGCACTACCACA
CAATACTTCTGGCTTACGCAGAGGGGATGCCCAGCCTCAGATGGGGCAGAGCAGCCACATTCAC
AAAGAAGGAAAGGGTTCTTTACGTCTGCTATGGGTCTAGTCAAGAGAGAGGTCTACCAAGTATG
TCACTGGTGGGTGACTGAAAAGGGTAGTCCAGCTGGGTGAGGTAGTACACACATTTAGCCCTAG
CATTCAGGAGGCTGAGACAGGATTGCATTGAGTTTGAGTTCAGTATGGACAACACCATAAGATG
TCATTTCAAAAGCACACATTGAGGTGGCACACACGTGTGATCCCAGCACTTGGGGACAAAAAGA
TAATTGCCAAAAGTTCAACAGATAAGTCTATGTAACAAGTTCCTAGATGGCCAGAGTTGCATGG
TGAGAACCTATCAAACAAACAAACAAAAAACCAACAACAGAAACAGAAAATACAAACGTGGTGG
TGTGATGGCACAAGATTTGTAACCATTCCAGCTATTCAGGAGGCTGAGGTGGGTGAACTGCTAT
TTCAACGCCTGCTTGGGGCGGGGCCTTTGCAGTGGGATAGTTCAGAGGTAACACTGCTTGTCAT
GAAGCCTGATGACCTGAGTTTGAACCCTGGAACCCACATGTTGGAAGGAGACAACCAATTCCTG
AAAGTTGTCCTCTGACCTCCACAATCTGTGTTTCCTGGGTTGTTTTGCACATGCACATACACAA
GTAAATAAATGGGAAAAAAACTTTAAAAGGTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101940	(Get FASTA)	NCBI Sequence Viewer
	XP_006228178	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75751	(Get FASTA)	NCBI Sequence Viewer
	EDL75753	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000055361
	ENSRNOP00000055361.2
	ENSRNOP00000097758.1

RefSeq Acc Id:

NP_001101940 ⟸ NM_001108470

- UniProtKB:

D3ZF35 (UniProtKB/TrEMBL), A6KQK1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKPIVPDSSGRAPPENEPAVVKLEDSDNYDKREDTLWDPGPEAARLRFRCFRYEEAIGPQEALA
QLRELCHQWLRPEVHSKEQILELLVLEQFLGALPSEIQARVQEQWPGSPEEAAALVDRLRWELD
GPRKWVTVQVQGKEVLSEKMEPSSFQPRPQVKLQTPEAGSETTPGATQELPLDLQMKEETELME
NPELLESEPLSAAQEAAATLLPKVAQGHGIALDQTSPHSDTEPDVPPWSEDPMPLWHEEVEGIL
SPGFTLQMDSITAEPDTVSPHLHVPWDLDMASLSGQMQSPTREGGFAHALVLPSDPGSEQDPAC
EDPCPSVGPALVATRWHAPRDRSQGHPSTGTGVMRGGRCDVCGKVFSQRSNLLRHQKIHTGERP
FVCGECGRSFSRSSHLLRHQLTHTEERPFVCRDCGQGFVRSARLEEHRRVHTGEQPFRCAECGQ
SFRQRSNLLQHQRIHGDPPGPAPPVRSLAGVPEPPGPFPCSECCESFPRRAVLLEHQAVHTGDK
SFGCVECGERFGRRSVLLQHRRVHSGERPFACAECGQSFRQRSNLTQHRRIHTGERPFACTECG
KAFRQRPTLTQHLRVHTGEKPFACPECGQRFSQRLKLTRHQRTHTGEKPYRCSECGLGFTQVSR
LTEHQRIHTGERPFACPECGQSFRQHANLIQHRRIHTGERPYACPECGKAFRQRPTLTQHLRTH
RREKPFACQDCGRRFHQSTKLIQHQRIHSTE

hide sequence

RefSeq Acc Id:	XP_006228178 ⟸ XM_006228116
- Peptide Label:	isoform X1
- UniProtKB:	D3ZF35 (UniProtKB/TrEMBL), A6KQK1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKPIVPDSSGRAPPENEPAVVKLEDSDNYDKREDTLWDPGPEAARLRFRCFRYEEAIGPQEALA QLRELCHQWLRPEVHSKEQILELLVLEQFLGALPSEIQARVQEQWPGSPEEAAALVDRLRWELD GPRKWVTVQVQGKEVLSEKMEPSSFQPRPQVKLQTPEAGSETTPGATQELPLDLQMKEETELME NPELLESEPLSAAQEAAATLLPKVAQGHGIALDQTSPHSDTEPDVPPWSEDPMPLWHEEVEGIL SPGFTLQMDSITAEPDTVSPHLHVPWDLDMASLSGQMQSPTREGGFAHALVLPSDPGSEQDPAC EDPCPSVGPALVATRWHAPRDRSQGHPSTGTGVMRGGRCDVCGKVFSQRSNLLRHQKIHTGERP FVCGECGRSFSRSSHLLRHQLTHTEERPFVCRDCGQGFVRSARLEEHRRVHTGEQPFRCAECGQ SFRQRSNLLQHQRIHGDPPGPAPPVRSLAGVPEPPGPFPCSECCESFPRRAVLLEHQAVHTGDK SFGCVECGERFGRRSVLLQHRRVHSGERPFACAECGQSFRQRSNLTQHRRIHTGERPFACTECG KAFRQRPTLTQHLRVHTGEKPFACPECGQRFSQRLKLTRHQRTHTGEKPYRCSECGLGFTQVSR LTEHQRIHTGERPFACPECGQSFRQHANLIQHRRIHTGERPYACPECGKAFRQRPTLTQHLRTH RREKPFACQDCGRRFHQSTKLIQHQRIHSTE hide sequence

RefSeq Acc Id:

ENSRNOP00000055361 ⟸ ENSRNOT00000058563

RefSeq Acc Id:

ENSRNOP00000097758 ⟸ ENSRNOT00000105137

Protein Domains

C2H2-type SCAN box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZF35-F1-model_v2	AlphaFold	D3ZF35	1-735	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308391	AgrOrtholog
BioCyc Gene	G2FUF-60689	BioCyc
Ensembl Genes	ENSRNOG00000027550	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000058563	ENTREZGENE
	ENSRNOT00000058563.3	UniProtKB/TrEMBL
	ENSRNOT00000105137.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	SCAN_sf	UniProtKB/TrEMBL
	Tscrpt_reg_SCAN	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:361508	UniProtKB/TrEMBL
NCBI Gene	361508	ENTREZGENE
PANTHER	B-CELL CLL_LYMPHOMA 6 MEMBER B PROTEIN	UniProtKB/TrEMBL
	C2H2-TYPE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PROTEIN ZBED8-RELATED	UniProtKB/TrEMBL
	SCAN DOMAIN-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
	TRANSCRIPTIONAL REPRESSOR PROTEIN YY	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Mzf1	PhenoGen
PROSITE	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000027550	RatGTEx
SMART	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I6ATA3_RAT	UniProtKB/TrEMBL
	A6KQK1	ENTREZGENE, UniProtKB/TrEMBL
	A6KQK4_RAT	UniProtKB/TrEMBL
	D3ZF35	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-03	Mzf1	myeloid zinc finger 1	Zfp98_predicted	zinc finger protein 98 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Zfp98_predicted	zinc finger protein 98 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar