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Gene: Cdc42ep5 (CDC42 effector protein 5) Rattus norvegicus

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Symbol:

Cdc42ep5

Name:

CDC42 effector protein 5

RGD ID:

1308382

Description:

Orthologous to human CDC42EP5 (CDC42 effector protein 5); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CDC42 effector protein (Rho GTPase binding) 5; LOC361505

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	79,108,036 - 79,110,550 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	1	70,035,921 - 70,038,990 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	1	75,426,169 - 75,426,693 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	83,990,486 - 83,991,010 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	77,134,072 - 77,134,596 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	73,717,207 - 73,719,600 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	73,719,005 - 73,719,529 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	74,827,844 - 74,830,485 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	69,449,412 - 69,449,936 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	67,083,539 - 67,084,063 (-)	NCBI		Celera
RGSC_v3.1	1	69,526,388 - 69,528,079 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrotoluene (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP)

cisplatin (ISO)

cobalt dichloride (EXP)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

dibutyl phthalate (EXP,ISO)

diclofenac (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

fonofos (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

inulin (ISO)

lead diacetate (EXP)

lipopolysaccharide (ISO)

methoxychlor (EXP)

Muconic dialdehyde (ISO)

nitrates (ISO)

okadaic acid (ISO)

panobinostat (ISO)

paracetamol (EXP)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

terbufos (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thalidomide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (EXP,ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

JNK cascade (ISO)

positive regulation of actin filament polymerization (ISO)

positive regulation of pseudopodium assembly (ISO)

regulation of cell shape (ISO)

Rho protein signal transduction (ISO)

Cellular Component

cytoplasm (ISO)

membrane (ISO)

plasma membrane (ISO)

Molecular Function

protein binding (ISO)

small GTPase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10490598	PMID:11035016

Genomics

Comparative Map Data

Cdc42ep5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	79,108,036 - 79,110,550 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	1	70,035,921 - 70,038,990 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	1	75,426,169 - 75,426,693 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	83,990,486 - 83,991,010 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	77,134,072 - 77,134,596 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	73,717,207 - 73,719,600 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	73,719,005 - 73,719,529 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	74,827,844 - 74,830,485 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	69,449,412 - 69,449,936 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	67,083,539 - 67,084,063 (-)	NCBI		Celera
RGSC_v3.1	1	69,526,388 - 69,528,079 (+)	NCBI
Cytogenetic Map	1	q21	NCBI

CDC42EP5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	54,465,026 - 54,473,296 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	54,465,026 - 54,473,296 (-)	Ensembl			hg38	GRCh38
GRCh37	19	54,976,210 - 54,984,443 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	59,668,022 - 59,676,234 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	59,668,021 - 59,676,234	NCBI
Celera	19	52,016,789 - 52,024,999 (-)	NCBI		Celera
Cytogenetic Map	19	q13.42	NCBI
HuRef	19	51,300,252 - 51,308,259 (-)	NCBI		HuRef
CHM1_1	19	54,970,045 - 54,978,294 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	57,558,310 - 57,566,553 (-)	NCBI		T2T-CHM13v2.0

Cdc42ep5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	4,154,259 - 4,167,830 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	4,154,259 - 4,167,859 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	4,151,260 - 4,164,831 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	4,151,260 - 4,164,860 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	4,102,862 - 4,116,304 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	3,754,347 - 3,767,789 (-)	NCBI		MGSCv36	mm8
Celera	7	3,902,050 - 3,915,471 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	2.4	NCBI

CDC42EP5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	60,486,593 - 60,494,360 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	62,410,587 - 62,418,178 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	51,411,848 - 51,419,686 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	60,253,939 - 60,260,937 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

CDC42EP5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	102,838,163 - 102,842,586 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	102,842,052 - 102,842,513 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	102,900,016 - 102,904,430 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	103,483,863 - 103,488,290 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	103,487,755 - 103,488,216 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	103,125,934 - 103,130,359 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	102,881,597 - 102,886,020 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	103,595,596 - 103,600,013 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cdc42ep5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	2,378,176 - 2,383,009 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936886	176,225 - 180,188 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936886	176,214 - 181,007 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDC42EP5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	58,852,751 - 58,857,621 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	58,852,426 - 58,857,622 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	53,404,024 - 53,409,452 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDC42EP5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	47,168,245 - 47,174,666 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	47,168,320 - 47,168,763 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	27,395,587 - 27,402,689 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdc42ep5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624832	2,272,070 - 2,276,460 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cdc42ep5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	176,661,808 - 176,664,018 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cdc42ep5
17 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	69
Count of miRNA genes:	65
Interacting mature miRNAs:	67
Transcripts:	ENSRNOT00000025110
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	43457837	87558729	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	43457837	87558729	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	42122968	87122968	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	43457837	87558729	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	34565726	79565726	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	42122968	87122968	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat

Markers in Region

RH141988

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	70,038,009 - 70,038,199 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	73,719,313 - 73,719,502	NCBI	Rnor6.0
Rnor_5.0	1	74,828,635 - 74,828,824	UniSTS	Rnor5.0
RGSC_v3.4	1	69,449,720 - 69,449,909	UniSTS	RGSC3.4
Celera	1	67,083,566 - 67,083,755	UniSTS
Cytogenetic Map	1	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	88	59	6	352	188	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025110 ⟹ ENSRNOP00000025110

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	73,719,005 - 73,719,529 (+)	Ensembl

RefSeq Acc Id:

NM_001108469 ⟹ NP_001101939

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	79,109,955 - 79,110,479 (+)	NCBI
mRatBN7.2	1	70,037,702 - 70,038,226 (+)	NCBI
Rnor_6.0	1	73,719,005 - 73,719,529 (+)	NCBI
Rnor_5.0	1	74,827,844 - 74,830,485 (-)	NCBI
RGSC_v3.4	1	69,449,412 - 69,449,936 (+)	RGD
Celera	1	67,083,539 - 67,084,063 (-)	RGD

Sequence:

show sequence

ATGGCGTTGTTGAAGCAGGTGGGCCCTGCACAGCCAAAGAAGCGACTGGAGCGTGGAGCACTCT
CTATCTCAGCACCCCTTGGAGACTTCAGGCACACATTGCACGTGGGAAGCAGTGGCGATGCCTT
CGGAGACACCTCATTCCTGAATAGGCACGGGGGTGGTCCACCTCCGGAGGCTGGAGCCCCACCA
GTTGTGGCCCCACATTCTGTCCCTCCACCTGCAGTTCCACAGGCCTCTGTGCCTGGTCTCCGAG
TTCCTTCACCTGCAGACCCGCTACTGTCCTTCCACCTGGACCTGGGCCCCTCTATGCTGGACGC
AGTGTTAGGCGTCATGGACGCGGAGCGCGGCGAGACGACGGCCACCAAGCCCAGTGGGGATGCC
CTCACTGGAATGCAGCATCCCAATGCCCACTGCTGCTCCAATGCTGACTTCCAGCTGGATGATG
TCATTGGTCTGTAGTATCTTGATTCCCGCAACTCCTCCCTCCCTGCACTCCACTTTTGTACACA
TAAATAGCCGAGT

hide sequence

RefSeq Acc Id:

XM_006228217 ⟹ XP_006228279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	79,108,626 - 79,110,550 (+)	NCBI
mRatBN7.2	1	70,036,368 - 70,038,990 (+)	NCBI
Rnor_6.0	1	73,717,652 - 73,719,600 (+)	NCBI
Rnor_5.0	1	74,827,844 - 74,830,485 (-)	NCBI

Sequence:

show sequence

AGGAACCACAGTGGGGGCTTGCCAGACTCTGGGGGCTAATTTCCTGAGTCTGAAGGAGGAGGGC
AGTAAACGATAGAGAATGAAGAACCCCGGACTCCTGGAATGTGAGGGAGGAAAGCAGGGTAACT
CCCAGCTTGTGAAACCAGAGAGCTCGGAGGTGGGGCTCCTGGGACTCAAGGGTGCAGGACCCAG
CGTGCAGCGGTGGCACTCAGGCCACATGCCTAGGTCCTGGAACCCCTACCAGATGGCGTTGTTG
AAGCAGGTGGGCCCTGCACAGCCAAAGAAGCGACTGGAGCGTGGAGCACTCTCTATCTCAGCAC
CCCTTGGAGACTTCAGGCACACATTGCACGTGGGAAGCAGTGGCGATGCCTTCGGAGACACCTC
ATTCCTGAATAGGCACGGGGGTGGTCCACCTCCGGAGGCTGGAGCCCCACCAGTTGTGGCCCCA
CATTCTGTCCCTCCACCTGCAGTTCCACAGGCCTCTGTGCCTGGTCTCCGAGTTCCTTCACCTG
CAGACCCGCTACTGTCCTTCCACCTGGACCTGGGCCCCTCTATGCTGGACGCAGTGTTAGGCGT
CATGGACGCGGAGCGCGGCGAGACGACGGCCACCAAGCCCAGTGGGGATGCCCTCACTGGAATG
CAGCATCCCAATGCCCACTGCTGCTCCAATGCTGACTTCCAGCTGGATGATGTCATTGGTCTGT
AGTATCTTGATTCCCGCAACTCCTCCCTCCCTGCACTCCACTTTTGTACACATAAATAGCCGAG
TTTTACGCGGGAAGGGGTGCAGAAGCAGGACAGTGGTGGGGTGCCACCAACTAAAAGTCAAATC
TGTCCTCA

hide sequence

RefSeq Acc Id:

XM_008758944 ⟹ XP_008757166

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	79,108,143 - 79,110,550 (+)	NCBI
mRatBN7.2	1	70,035,924 - 70,038,990 (+)	NCBI
Rnor_6.0	1	73,717,208 - 73,719,600 (+)	NCBI

Sequence:

show sequence

CGCACACACACAACACACACGCACAAGCACGCGCGGTCACCACTGCCCCAACAGCTGTAGTCTG
GAAAAAATTAGTCTTCTAAACAGCCAGACTTCCCTGGTTTCAGGAAATTCCAGGCTAGGCGGGG
GAGGGGCCAGGCTGGGGGCGCGACGGTCCATCCCCCCCTAGCTCTGCTCTGGCTTCCACTATGC
TCAGTCCTGATCTCCACCTACCCCCACAATCCCTTCAAAGGGCCTTTAGGTTTACTACCAACAA
GGCTTTCTAGTCCTTTAAATCCTAGAGGCAAATTTTGAGGGAATAAGGAAGGTTGGGAGGGGCC
TATGGCTTAACCCTCTCAGTCTGGGACAAGAGGCCAACTCTCACTGGGCGTTGACTCGGTGTTG
GGTTGGGAGGCTGCTATGGCCCCCGAGAGGGGCTGAAGCTTATTCCCGGTGCAGGTGAGATCCC
GCCGGGAGAAAGAAGGAAAAAGGCGTCAGAGAGGTAGCCTCCAAGGCCAGGAGAGACCCCAGTT
TAAGCCGGATTACAATTCAGTCTGGACCACGAGATGGCGTTGTTGAAGCAGGTGGGCCCTGCAC
AGCCAAAGAAGCGACTGGAGCGTGGAGCACTCTCTATCTCAGCACCCCTTGGAGACTTCAGGCA
CACATTGCACGTGGGAAGCAGTGGCGATGCCTTCGGAGACACCTCATTCCTGAATAGGCACGGG
GGTGGTCCACCTCCGGAGGCTGGAGCCCCACCAGTTGTGGCCCCACATTCTGTCCCTCCACCTG
CAGTTCCACAGGCCTCTGTGCCTGGTCTCCGAGTTCCTTCACCTGCAGACCCGCTACTGTCCTT
CCACCTGGACCTGGGCCCCTCTATGCTGGACGCAGTGTTAGGCGTCATGGACGCGGAGCGCGGC
GAGACGACGGCCACCAAGCCCAGTGGGGATGCCCTCACTGGAATGCAGCATCCCAATGCCCACT
GCTGCTCCAATGCTGACTTCCAGCTGGATGATGTCATTGGTCTGTAGTATCTTGATTCCCGCAA
CTCCTCCCTCCCTGCACTCCACTTTTGTACACATAAATAGCCGAGTTTTACGCGGGAAGGGGTG
CAGAAGCAGGACAGTGGTGGGGTGCCACCAACTAAAAGTCAAATCTGTCCTCA

hide sequence

RefSeq Acc Id:

XM_008758945 ⟹ XP_008757167

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	79,108,036 - 79,110,550 (+)	NCBI
mRatBN7.2	1	70,035,921 - 70,038,990 (+)	NCBI
Rnor_6.0	1	73,717,207 - 73,719,600 (+)	NCBI

Sequence:

show sequence

GCGCACACACACAACACACACGCACAAGCACGCGCGGTCACCACTGCCCCAACAGCTGTAGTCT
GGAAAAAATTAGTCTTCTAAACAGCCAGACTTCCCTGGTTTCAGGAAATTCCAGGCTAGGCGGG
GGAGGGGCCAGGCTGGGGGCGCGACGGTCCATCCCCCCCTAGCTCTGCTCTGGCTTCCACTATG
CTCAGTCCTGATCTCCACCTACCCCCACAATCCCTTCAAAGGGCCTTTAGGTTTACTACCAACA
AGGCTTTCTAGTCCTTTAAATCCTAGAGGCAAATTTTGAGGGAATAAGGAAGGTTGGGAGGGGC
CTATGGCTTAACCCTCTCAGTCTGGGACAAGAGGCCAACTCTCACTGGGCGTTGACTCGGTGTT
GGGTTGGGAGGCTGCTATGGCCCCCGAGAGGGGCTGAAGCTTATTCCCGGTGCAGATGGCGTTG
TTGAAGCAGGTGGGCCCTGCACAGCCAAAGAAGCGACTGGAGCGTGGAGCACTCTCTATCTCAG
CACCCCTTGGAGACTTCAGGCACACATTGCACGTGGGAAGCAGTGGCGATGCCTTCGGAGACAC
CTCATTCCTGAATAGGCACGGGGGTGGTCCACCTCCGGAGGCTGGAGCCCCACCAGTTGTGGCC
CCACATTCTGTCCCTCCACCTGCAGTTCCACAGGCCTCTGTGCCTGGTCTCCGAGTTCCTTCAC
CTGCAGACCCGCTACTGTCCTTCCACCTGGACCTGGGCCCCTCTATGCTGGACGCAGTGTTAGG
CGTCATGGACGCGGAGCGCGGCGAGACGACGGCCACCAAGCCCAGTGGGGATGCCCTCACTGGA
ATGCAGCATCCCAATGCCCACTGCTGCTCCAATGCTGACTTCCAGCTGGATGATGTCATTGGTC
TGTAGTATCTTGATTCCCGCAACTCCTCCCTCCCTGCACTCCACTTTTGTACACATAAATAGCC
GAGTTTTACGCGGGAAGGGGTGCAGAAGCAGGACAGTGGTGGGGTGCCACCAACTAAAAGTCAA
ATCTGTCCTCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101939	(Get FASTA)	NCBI Sequence Viewer
	NP_001424524	(Get FASTA)	NCBI Sequence Viewer
	NP_001424525	(Get FASTA)	NCBI Sequence Viewer
	XP_006228279	(Get FASTA)	NCBI Sequence Viewer
	XP_008757166	(Get FASTA)	NCBI Sequence Viewer
	XP_008757167	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75818	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001101939 ⟸ NM_001108469
- UniProtKB:	A6KNJ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALLKQVGPAQPKKRLERGALSISAPLGDFRHTLHVGSSGDAFGDTSFLNRHGGGPPPEAGAPP VVAPHSVPPPAVPQASVPGLRVPSPADPLLSFHLDLGPSMLDAVLGVMDAERGETTATKPSGDA LTGMQHPNAHCCSNADFQLDDVIGL hide sequence

RefSeq Acc Id:

XP_006228279 ⟸ XM_006228217

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKNPGLLECEGGKQGNSQLVKPESSEVGLLGLKGAGPSVQRWHSGHMPRSWNPYQMALLKQVGP
AQPKKRLERGALSISAPLGDFRHTLHVGSSGDAFGDTSFLNRHGGGPPPEAGAPPVVAPHSVPP
PAVPQASVPGLRVPSPADPLLSFHLDLGPSMLDAVLGVMDAERGETTATKPSGDALTGMQHPNA
HCCSNADFQLDDVIGL

hide sequence

RefSeq Acc Id:	XP_008757166 ⟸ XM_008758944
- Peptide Label:	isoform X2
- Sequence:	show sequence MALLKQVGPAQPKKRLERGALSISAPLGDFRHTLHVGSSGDAFGDTSFLNRHGGGPPPEAGAPP VVAPHSVPPPAVPQASVPGLRVPSPADPLLSFHLDLGPSMLDAVLGVMDAERGETTATKPSGDA LTGMQHPNAHCCSNADFQLDDVIGL hide sequence

RefSeq Acc Id:	XP_008757167 ⟸ XM_008758945
- Peptide Label:	isoform X2
- Sequence:	show sequence MALLKQVGPAQPKKRLERGALSISAPLGDFRHTLHVGSSGDAFGDTSFLNRHGGGPPPEAGAPP VVAPHSVPPPAVPQASVPGLRVPSPADPLLSFHLDLGPSMLDAVLGVMDAERGETTATKPSGDA LTGMQHPNAHCCSNADFQLDDVIGL hide sequence

Ensembl Acc Id:

ENSRNOP00000025110 ⟸ ENSRNOT00000025110

Protein Domains

CRIB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZWQ6-F1-model_v2	AlphaFold	D3ZWQ6	1-153	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308382	AgrOrtholog
BioCyc Gene	G2FUF-60821	BioCyc
Ensembl Genes	ENSRNOG00000018616	Ensembl
InterPro	Cdc42_effect	UniProtKB/TrEMBL
	Cdc42_Effector_BORG/CEP	UniProtKB/TrEMBL
	CRIB_dom	UniProtKB/TrEMBL
KEGG Report	rno:361505	UniProtKB/TrEMBL
NCBI Gene	361505	ENTREZGENE
PANTHER	CDC42 EFFECTOR PROTEIN 5	UniProtKB/TrEMBL
	CDC42 EFFECTOR PROTEIN BORG	UniProtKB/TrEMBL
Pfam	BORG_CEP	UniProtKB/TrEMBL
	PBD	UniProtKB/TrEMBL
PhenoGen	Cdc42ep5	PhenoGen
PROSITE	CRIB	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018616	RatGTEx
SMART	PBD	UniProtKB/TrEMBL
UniProt	A6KNJ9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-13	Cdc42ep5	CDC42 effector protein 5	Cdc42ep5	CDC42 effector protein (Rho GTPase binding) 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Cdc42ep5	CDC42 effector protein (Rho GTPase binding) 5	Cdc42ep5_predicted	CDC42 effector protein (Rho GTPase binding) 5 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cdc42ep5_predicted	CDC42 effector protein (Rho GTPase binding) 5 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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