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Gene: Trio (trio Rho guanine nucleotide exchange factor) Rattus norvegicus

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Symbol:

Trio

Name:

trio Rho guanine nucleotide exchange factor

RGD ID:

1308360

Description:

Enables enzyme binding activity. Involved in modulation of chemical synaptic transmission. Is active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and postsynapse. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 44 and autosomal dominant intellectual developmental disorder 63 with macrocephaly. Orthologous to human TRIO (trio Rho guanine nucleotide exchange factor); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC310192; triple functional domain (PTPRF interacting); triple functional domain protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	80,235,485 - 80,531,824 (-)	NCBI		GRCr8
mRatBN7.2	2	78,505,069 - 78,801,384 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	78,505,070 - 78,803,135 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	85,573,060 - 85,868,316 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	83,694,791 - 83,990,060 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	78,761,319 - 79,056,786 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	80,471,398 - 80,769,313 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	80,473,202 - 80,667,481 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	100,137,355 - 100,437,964 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	79,634,843 - 79,832,549 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	79,581,604 - 79,878,530 (-)	NCBI
Celera	2	74,141,588 - 74,436,556 (-)	NCBI		Celera
Cytogenetic Map	2	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trio	Rat	autism spectrum disorder		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism spectrum disorder	ClinVar	PMID:25741868
Trio	Rat	autistic disorder		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autistic disorder	ClinVar
Trio	Rat	autosomal dominant intellectual developmental disorder 40		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability and autosomal dominant 40	ClinVar	PMID:25741868
Trio	Rat	autosomal dominant intellectual developmental disorder 44		ISO	TRIO (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:12551902 more ...
Trio	Rat	autosomal dominant intellectual developmental disorder 44		ISO	TRIO (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:12551902 more ...
Trio	Rat	autosomal dominant intellectual developmental disorder 63 with macrocephaly		ISO	TRIO (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:19481195 more ...
Trio	Rat	autosomal recessive nonsyndromic deafness 28		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Deafness and autosomal recessive 28	ClinVar	PMID:25741868 more ...
Trio	Rat	Deafness		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Deafness	ClinVar	PMID:25741868
Trio	Rat	Developmental Disabilities		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental delay	ClinVar	PMID:36937954
Trio	Rat	Developmental Disease		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental disorder	ClinVar	PMID:25741868
Trio	Rat	epilepsy		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Seizures	ClinVar	PMID:25741868
Trio	Rat	genetic disease		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:10652265 more ...
Trio	Rat	intellectual disability		ISO	TRIO (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:23033978 more ...
Trio	Rat	microcephaly		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Microcephaly	ClinVar	PMID:32581362
Trio	Rat	Neurodevelopmental Disorders		ISO	TRIO (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868
Trio	Rat	primary ciliary dyskinesia		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary ciliary dyskinesia	ClinVar	PMID:28492532
Trio	Rat	syndromic intellectual disability		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: Syndromic intellectual disability	ClinVar	PMID:25741868 more ...
Trio	Rat	Three M Syndrome 2		ISO	TRIO (Homo sapiens)	8554872	ClinVar Annotator: match by term: THREE M SYNDROME 2	ClinVar	PMID:19481195 and PMID:25741868

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trio	Rat	acute myeloid leukemia		ISO	TRIO (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:18206229
Trio	Rat	Liver Neoplasms		ISO	TRIO (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:19233941
Trio	Rat	Neurodevelopmental Disorders		ISO	TRIO (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:28191889
Trio	Rat	pre-malignant neoplasm		ISO	TRIO (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:19233941

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trio	Rat	autosomal dominant intellectual developmental disorder 44		ISO	TRIO (Homo sapiens)	7240710		OMIM
Trio	Rat	autosomal dominant intellectual developmental disorder 63 with macrocephaly		ISO	TRIO (Homo sapiens)	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trio	Rat	(-)-demecolcine	increases expression	ISO	TRIO (Homo sapiens)	6480464	Demecolcine results in increased expression of TRIO mRNA	CTD	PMID:23649840
Trio	Rat	1,2-dichloroethane	increases expression	ISO	TRIO (Homo sapiens)	6480464	ethylene dichloride results in increased expression of TRIO mRNA alternative form	CTD	PMID:37028497
Trio	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Trio (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of TRIO mRNA	CTD	PMID:22206623
Trio	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Trio (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of TRIO mRNA	CTD	PMID:22206623
Trio	Rat	17alpha-ethynylestradiol	decreases expression	EXP		6480464	Ethinyl Estradiol results in decreased expression of TRIO mRNA	CTD	PMID:17557909
Trio	Rat	17beta-estradiol	decreases expression	ISO	TRIO (Homo sapiens)	6480464	Estradiol results in decreased expression of TRIO mRNA	CTD	PMID:21795739
Trio	Rat	17beta-estradiol	increases expression	ISO	TRIO (Homo sapiens)	6480464	Estradiol results in increased expression of TRIO mRNA	CTD	PMID:31614463
Trio	Rat	17beta-estradiol	increases expression	EXP		6480464	Estradiol results in increased expression of TRIO mRNA	CTD	PMID:32145629
Trio	Rat	17beta-estradiol	affects expression	ISO	TRIO (Homo sapiens)	6480464	Estradiol affects the expression of TRIO mRNA	CTD	PMID:22574217
Trio	Rat	17beta-estradiol	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[Estradiol co-treated with TGFB1 protein] results in increased expression of TRIO mRNA and [Parathion co-treated with Estradiol] results in increased expression of TRIO protein	CTD	PMID:17622325 and PMID:30165855
Trio	Rat	17beta-hydroxy-5alpha-androstan-3-one	increases expression	ISO	TRIO (Homo sapiens)	6480464	Dihydrotestosterone results in increased expression of TRIO mRNA	CTD	PMID:29581250
Trio	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Trio (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Lipopolysaccharides] results in increased methylation of TRIO gene	CTD	PMID:21212295
Trio	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of TRIO mRNA	CTD	PMID:21215274 and PMID:32109520
Trio	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of TRIO mRNA	CTD	PMID:22298810
Trio	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	TRIO (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in increased expression of TRIO mRNA	CTD	PMID:21296121
Trio	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Trio (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of TRIO mRNA	CTD	PMID:19465110
Trio	Rat	2,3,7,8-Tetrachlorodibenzofuran	decreases expression	EXP		6480464	2 more ...	CTD	PMID:32109520
Trio	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2 and 4-dinitrotoluene affects the expression of TRIO mRNA	CTD	PMID:21346803
Trio	Rat	2,6-dinitrotoluene	affects expression	EXP		6480464	2 and 6-dinitrotoluene affects the expression of TRIO mRNA	CTD	PMID:21346803
Trio	Rat	2-methylcholine	affects expression	ISO	TRIO (Homo sapiens)	6480464	beta-methylcholine affects the expression of TRIO mRNA	CTD	PMID:21179406
Trio	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of TRIO mRNA	CTD	PMID:28628672
Trio	Rat	4,4'-sulfonyldiphenol	increases methylation	ISO	TRIO (Homo sapiens)	6480464	bisphenol S results in increased methylation of TRIO gene	CTD	PMID:31601247
Trio	Rat	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of TRIO mRNA	CTD	PMID:36041667
Trio	Rat	4-hydroxyphenyl retinamide	decreases expression	ISO	Trio (Mus musculus)	6480464	Fenretinide results in decreased expression of TRIO mRNA	CTD	PMID:28973697
Trio	Rat	acrolein	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased expression of and results in increased oxidation of TRIO mRNA more ...	CTD	PMID:32699268 and PMID:32845096
Trio	Rat	aflatoxin B1	decreases methylation	ISO	TRIO (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of TRIO intron	CTD	PMID:30157460
Trio	Rat	Aflatoxin B2 alpha	affects methylation	ISO	TRIO (Homo sapiens)	6480464	aflatoxin B2 affects the methylation of TRIO intron	CTD	PMID:30157460
Trio	Rat	all-trans-retinoic acid	decreases expression	ISO	TRIO (Homo sapiens)	6480464	Tretinoin results in decreased expression of TRIO mRNA	CTD	PMID:15498508
Trio	Rat	all-trans-retinoic acid	increases expression	ISO	TRIO (Homo sapiens)	6480464	Tretinoin results in increased expression of TRIO mRNA	CTD	PMID:23724009
Trio	Rat	alpha-pinene	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased expression of and results in increased oxidation of TRIO mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased expression of and results in increased oxidation of TRIO mRNA	CTD	PMID:32699268
Trio	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of TRIO mRNA	CTD	PMID:38685447
Trio	Rat	amphetamine	decreases expression	EXP		6480464	Amphetamine results in decreased expression of TRIO mRNA	CTD	PMID:30779732
Trio	Rat	antirheumatic drug	increases expression	ISO	TRIO (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of TRIO mRNA	CTD	PMID:24449571
Trio	Rat	aristolochic acid A	decreases expression	ISO	TRIO (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of TRIO mRNA	CTD	PMID:33212167
Trio	Rat	arsenite(3-)	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	arsenite inhibits the reaction [G3BP1 protein binds to TRIO mRNA]	CTD	PMID:32406909
Trio	Rat	atropine	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	Atropine inhibits the reaction [Parathion results in increased expression of TRIO protein]	CTD	PMID:17390078
Trio	Rat	benzo[a]pyrene	decreases expression	ISO	Trio (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of TRIO mRNA	CTD	PMID:19770486
Trio	Rat	benzo[a]pyrene	increases methylation	ISO	Trio (Mus musculus)	6480464	Benzo(a)pyrene results in increased methylation of TRIO intron	CTD	PMID:27901495
Trio	Rat	benzo[a]pyrene	affects methylation	ISO	TRIO (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of TRIO intron	CTD	PMID:30157460
Trio	Rat	benzo[a]pyrene	increases methylation	ISO	TRIO (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of TRIO promoter	CTD	PMID:27901495
Trio	Rat	benzo[a]pyrene	decreases expression	ISO	TRIO (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of TRIO mRNA	CTD	PMID:20064835 more ...
Trio	Rat	benzo[a]pyrene diol epoxide I	decreases expression	ISO	TRIO (Homo sapiens)	6480464	7 more ...	CTD	PMID:19150397 and PMID:20018196
Trio	Rat	benzo[e]pyrene	affects methylation	ISO	TRIO (Homo sapiens)	6480464	benzo(e)pyrene affects the methylation of TRIO intron	CTD	PMID:30157460
Trio	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of TRIO mRNA	CTD	PMID:30816183 and PMID:32145629
Trio	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of TRIO mRNA	CTD	PMID:36041667
Trio	Rat	bisphenol A	increases methylation	ISO	TRIO (Homo sapiens)	6480464	bisphenol A results in increased methylation of TRIO gene	CTD	PMID:31601247
Trio	Rat	bisphenol A	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of TRIO mRNA	CTD	PMID:28628672
Trio	Rat	bisphenol F	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of TRIO mRNA	CTD	PMID:36041667
Trio	Rat	bortezomib	decreases expression	ISO	TRIO (Homo sapiens)	6480464	Bortezomib results in decreased expression of TRIO mRNA	CTD	PMID:20977926
Trio	Rat	C60 fullerene	increases expression	EXP		6480464	fullerene C60 results in increased expression of TRIO mRNA	CTD	PMID:19167457
Trio	Rat	cadmium dichloride	increases expression	ISO	TRIO (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of TRIO mRNA	CTD	PMID:26472689 and PMID:38382870
Trio	Rat	caffeine	affects phosphorylation	ISO	TRIO (Homo sapiens)	6480464	Caffeine affects the phosphorylation of TRIO protein	CTD	PMID:35688186
Trio	Rat	casticin	increases expression	ISO	Trio (Mus musculus)	6480464	casticin results in increased expression of TRIO mRNA	CTD	PMID:28444820
Trio	Rat	CGP 52608	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to TRIO gene]	CTD	PMID:28238834
Trio	Rat	chloroprene	increases expression	EXP		6480464	Chloroprene results in increased expression of TRIO mRNA	CTD	PMID:23125180
Trio	Rat	chlorpyrifos	decreases expression	ISO	Trio (Mus musculus)	6480464	Chlorpyrifos results in decreased expression of TRIO mRNA	CTD	PMID:37019170
Trio	Rat	choline	multiple interactions	ISO	Trio (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased methylation of TRIO gene	CTD	PMID:20938992
Trio	Rat	cisplatin	decreases expression	ISO	TRIO (Homo sapiens)	6480464	Cisplatin results in decreased expression of TRIO mRNA	CTD	PMID:27392435
Trio	Rat	cisplatin	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	Cisplatin promotes the reaction [jinfukang results in decreased expression of TRIO mRNA] and jinfukang promotes the reaction [Cisplatin results in decreased expression of TRIO mRNA]	CTD	PMID:27392435
Trio	Rat	clobetasol	decreases expression	ISO	Trio (Mus musculus)	6480464	Clobetasol results in decreased expression of TRIO mRNA	CTD	PMID:27462272
Trio	Rat	copper(II) sulfate	increases expression	ISO	TRIO (Homo sapiens)	6480464	Copper Sulfate results in increased expression of TRIO mRNA	CTD	PMID:19549813
Trio	Rat	coumarin	increases phosphorylation	ISO	TRIO (Homo sapiens)	6480464	coumarin results in increased phosphorylation of TRIO protein	CTD	PMID:35688186
Trio	Rat	Cuprizon	increases expression	EXP		6480464	Cuprizone results in increased expression of TRIO mRNA	CTD	PMID:27523638
Trio	Rat	cyclosporin A	increases expression	ISO	TRIO (Homo sapiens)	6480464	Cyclosporine results in increased expression of TRIO mRNA	CTD	PMID:20106945
Trio	Rat	dexamethasone	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of TRIO mRNA	CTD	PMID:28628672
Trio	Rat	dibutyl phthalate	decreases expression	EXP		6480464	Dibutyl Phthalate results in decreased expression of TRIO mRNA	CTD	PMID:24893172
Trio	Rat	dicrotophos	increases expression	ISO	TRIO (Homo sapiens)	6480464	dicrotophos results in increased expression of TRIO mRNA	CTD	PMID:28302478
Trio	Rat	dimethylarsinous acid	increases expression	ISO	TRIO (Homo sapiens)	6480464	dimethylarsinous acid results in increased expression of TRIO mRNA	CTD	PMID:23487506
Trio	Rat	dioxygen	increases expression	ISO	Trio (Mus musculus)	6480464	Oxygen deficiency results in increased expression of TRIO mRNA	CTD	PMID:24205000
Trio	Rat	dorsomorphin	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TRIO mRNA	CTD	PMID:27188386
Trio	Rat	ethanol	multiple interactions	ISO	Trio (Mus musculus)	6480464	Ethanol affects the expression of and affects the splicing of TRIO mRNA	CTD	PMID:30319688
Trio	Rat	fenthion	decreases expression	ISO	Trio (Mus musculus)	6480464	Fenthion results in decreased expression of TRIO mRNA	CTD	PMID:34813904
Trio	Rat	flutamide	increases expression	EXP		6480464	Flutamide results in increased expression of TRIO mRNA	CTD	PMID:24136188
Trio	Rat	folic acid	multiple interactions	ISO	Trio (Mus musculus)	6480464	[1 more ...	CTD	PMID:20938992 and PMID:22206623
Trio	Rat	folic acid	decreases expression	ISO	Trio (Mus musculus)	6480464	Folic Acid results in decreased expression of TRIO mRNA	CTD	PMID:25629700
Trio	Rat	FR900359	affects phosphorylation	ISO	TRIO (Homo sapiens)	6480464	FR900359 affects the phosphorylation of TRIO protein	CTD	PMID:37730182
Trio	Rat	hydrogen peroxide	decreases expression	ISO	TRIO (Homo sapiens)	6480464	Hydrogen Peroxide results in decreased expression of TRIO mRNA	CTD	PMID:18951874
Trio	Rat	indometacin	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of TRIO mRNA	CTD	PMID:28628672
Trio	Rat	ivermectin	decreases expression	ISO	TRIO (Homo sapiens)	6480464	Ivermectin results in decreased expression of TRIO protein	CTD	PMID:32959892
Trio	Rat	L-methionine	multiple interactions	ISO	Trio (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased methylation of TRIO gene	CTD	PMID:20938992
Trio	Rat	lead(0)	decreases expression	ISO	TRIO (Homo sapiens)	6480464	Lead results in decreased expression of TRIO mRNA	CTD	PMID:19921347
Trio	Rat	lipopolysaccharide	multiple interactions	ISO	Trio (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Lipopolysaccharides] results in increased methylation of TRIO gene	CTD	PMID:21212295
Trio	Rat	methapyrilene	affects methylation	ISO	TRIO (Homo sapiens)	6480464	Methapyrilene affects the methylation of TRIO intron	CTD	PMID:30157460
Trio	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of TRIO gene	CTD	PMID:35440735
Trio	Rat	methylmercury chloride	increases expression	ISO	TRIO (Homo sapiens)	6480464	methylmercuric chloride results in increased expression of TRIO mRNA	CTD	PMID:23179753 more ...
Trio	Rat	N,N-diethyl-m-toluamide	multiple interactions	EXP		6480464	[Permethrin co-treated with DEET] affects the methylation of TRIO gene	CTD	PMID:33148267
Trio	Rat	nickel dichloride	increases expression	ISO	TRIO (Homo sapiens)	6480464	nickel chloride results in increased expression of TRIO mRNA	CTD	PMID:17312168
Trio	Rat	nickel dichloride	affects expression	EXP		6480464	nickel chloride affects the expression of TRIO mRNA	CTD	PMID:22110744
Trio	Rat	oxaliplatin	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] affects the expression of TRIO mRNA	CTD	PMID:25729387
Trio	Rat	ozone	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased expression of and results in increased oxidation of TRIO mRNA more ...	CTD	PMID:32699268 and PMID:32845096
Trio	Rat	paracetamol	increases expression	ISO	TRIO (Homo sapiens)	6480464	Acetaminophen results in increased expression of TRIO mRNA	CTD	PMID:29067470
Trio	Rat	parathion	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[Parathion co-treated with Estradiol] results in increased expression of TRIO protein and Atropine inhibits the reaction [Parathion results in increased expression of TRIO protein]	CTD	PMID:17390078 and PMID:17622325
Trio	Rat	parathion	increases expression	ISO	TRIO (Homo sapiens)	6480464	Parathion results in increased expression of TRIO protein	CTD	PMID:17390078 and PMID:17622325
Trio	Rat	permethrin	multiple interactions	EXP		6480464	[Permethrin co-treated with DEET] affects the methylation of TRIO gene	CTD	PMID:33148267
Trio	Rat	phenobarbital	affects methylation	ISO	Trio (Mus musculus)	6480464	Phenobarbital affects the methylation of TRIO gene	CTD	PMID:19233941
Trio	Rat	phenylmercury acetate	increases expression	ISO	TRIO (Homo sapiens)	6480464	Phenylmercuric Acetate results in increased expression of TRIO mRNA	CTD	PMID:26272509
Trio	Rat	phenylmercury acetate	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TRIO mRNA	CTD	PMID:27188386
Trio	Rat	pirinixic acid	increases expression	ISO	Trio (Mus musculus)	6480464	pirinixic acid results in increased expression of TRIO mRNA	CTD	PMID:17426115
Trio	Rat	potassium dichromate	decreases expression	ISO	TRIO (Homo sapiens)	6480464	Potassium Dichromate results in decreased expression of TRIO protein	CTD	PMID:23718831
Trio	Rat	resveratrol	multiple interactions	ISO	Trio (Mus musculus)	6480464	Resveratrol inhibits the reaction [titanium dioxide results in increased expression of TRIO mRNA]	CTD	PMID:31298478
Trio	Rat	SB 431542	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TRIO mRNA	CTD	PMID:27188386
Trio	Rat	silver atom	decreases expression	ISO	Trio (Mus musculus)	6480464	Silver results in decreased expression of TRIO mRNA	CTD	PMID:27131904
Trio	Rat	silver(0)	decreases expression	ISO	Trio (Mus musculus)	6480464	Silver results in decreased expression of TRIO mRNA	CTD	PMID:27131904
Trio	Rat	sodium arsenate	decreases expression	ISO	Trio (Mus musculus)	6480464	sodium arsenate results in decreased expression of TRIO mRNA	CTD	PMID:21795629
Trio	Rat	sodium arsenate	increases expression	ISO	Trio (Mus musculus)	6480464	sodium arsenate results in increased expression of TRIO mRNA	CTD	PMID:21795629
Trio	Rat	sodium arsenite	increases expression	ISO	TRIO (Homo sapiens)	6480464	sodium arsenite results in increased expression of TRIO mRNA	CTD	PMID:38568856
Trio	Rat	tamibarotene	affects expression	ISO	TRIO (Homo sapiens)	6480464	tamibarotene affects the expression of TRIO mRNA	CTD	PMID:15498508
Trio	Rat	tert-butyl hydroperoxide	increases expression	ISO	TRIO (Homo sapiens)	6480464	tert-Butylhydroperoxide results in increased expression of TRIO mRNA	CTD	PMID:15336504
Trio	Rat	thiram	increases expression	ISO	TRIO (Homo sapiens)	6480464	Thiram results in increased expression of TRIO mRNA	CTD	PMID:38568856
Trio	Rat	titanium dioxide	multiple interactions	ISO	Trio (Mus musculus)	6480464	Resveratrol inhibits the reaction [titanium dioxide results in increased expression of TRIO mRNA]	CTD	PMID:31298478
Trio	Rat	titanium dioxide	decreases methylation	ISO	Trio (Mus musculus)	6480464	titanium dioxide results in decreased methylation of TRIO gene	CTD	PMID:35295148
Trio	Rat	titanium dioxide	increases methylation	ISO	Trio (Mus musculus)	6480464	titanium dioxide results in increased methylation of TRIO gene	CTD	PMID:35295148
Trio	Rat	titanium dioxide	increases expression	ISO	Trio (Mus musculus)	6480464	titanium dioxide results in increased expression of TRIO mRNA	CTD	PMID:31298478
Trio	Rat	topotecan	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] affects the expression of TRIO mRNA	CTD	PMID:25729387
Trio	Rat	trichostatin A	increases expression	ISO	TRIO (Homo sapiens)	6480464	trichostatin A results in increased expression of TRIO mRNA	CTD	PMID:24935251 and PMID:26272509
Trio	Rat	triphenyl phosphate	affects expression	ISO	TRIO (Homo sapiens)	6480464	triphenyl phosphate affects the expression of TRIO mRNA	CTD	PMID:37042841
Trio	Rat	triphenyl phosphate	increases expression	EXP		6480464	triphenyl phosphate results in increased expression of TRIO mRNA	CTD	PMID:30589522
Trio	Rat	troglitazone	decreases expression	ISO	Trio (Mus musculus)	6480464	troglitazone results in decreased expression of TRIO mRNA	CTD	PMID:28973697
Trio	Rat	tropan-3alpha-yl 3-hydroxy-2-phenylpropanoate	multiple interactions	ISO	TRIO (Homo sapiens)	6480464	Atropine inhibits the reaction [Parathion results in increased expression of TRIO protein]	CTD	PMID:17390078
Trio	Rat	valproic acid	decreases methylation	ISO	TRIO (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of TRIO gene	CTD	PMID:29154799
Trio	Rat	valproic acid	affects splicing	EXP		6480464	Valproic Acid affects the splicing of TRIO mRNA	CTD	PMID:29427782
Trio	Rat	vincristine	increases expression	ISO	TRIO (Homo sapiens)	6480464	Vincristine results in increased expression of TRIO mRNA	CTD	PMID:23649840

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trio	Rat	axon guidance	involved_in	IBA	FB:FBgn0024277 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Trio	Rat	modulation of chemical synaptic transmission	involved_in	IDA		155230791	PMID:26858404	SynGO
Trio	Rat	modulation of chemical synaptic transmission	involved_in	IMP		155230791	PMID:26858404	SynGO
Trio	Rat	negative regulation of fat cell differentiation	involved_in	ISS	UniProtKB:Q0KL02	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Trio	Rat	negative regulation of fat cell differentiation	involved_in	ISO	Trio (Mus musculus)	1624291	PMID:22666460	RGD	PMID:22666460
Trio	Rat	negative regulation of fat cell differentiation	involved_in	IEA	UniProtKB:Q0KL02 and ensembl:ENSMUSP00000087714	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trio	Rat	neuron projection morphogenesis	involved_in	IEA	UniProtKB:O75962 and ensembl:ENSP00000339299	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trio	Rat	neuron projection morphogenesis	involved_in	ISO	TRIO (Homo sapiens)	1624291	PMID:32109419	RGD	PMID:32109419
Trio	Rat	neuron projection morphogenesis	involved_in	ISS	UniProtKB:O75962	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Trio	Rat	postsynaptic modulation of chemical synaptic transmission	involved_in	IEA	UniProtKB:O75962 and ensembl:ENSP00000339299	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trio	Rat	postsynaptic modulation of chemical synaptic transmission	involved_in	ISO	TRIO (Homo sapiens)	1624291	PMID:26858404	RGD	PMID:26858404

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trio	Rat	cell projection	located_in	IEA	UniProtKB-SubCell:SL-0280	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Trio	Rat	cell projection	located_in	IEA	UniProtKB-KW:KW-0966	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Trio	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Trio	Rat	cytoplasm	is_active_in	IBA	MGI:1277173 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Trio	Rat	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Trio	Rat	extrinsic component of membrane	is_active_in	IBA	FB:FBgn0024277 and PANTHER:PTN001481781	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Trio	Rat	glutamatergic synapse	is_active_in	ISO	TRIO (Homo sapiens)	1624291	PMID:26858404	RGD	PMID:26858404
Trio	Rat	glutamatergic synapse	is_active_in	IEA	UniProtKB:O75962 and ensembl:ENSP00000339299	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trio	Rat	glutamatergic synapse	is_active_in	IEP		155230813	PMID:27907191	SynGO
Trio	Rat	glutamatergic synapse	is_active_in	IDA		155230813	PMID:27907191	SynGO
Trio	Rat	glutamatergic synapse	is_active_in	IMP		155230813	PMID:27907191	SynGO
Trio	Rat	postsynapse	located_in	IEA	GO:0099170	1600115	GO_REF:0000108	GOC	GO_REF:0000108
Trio	Rat	postsynapse	is_active_in	IEP		155230813	PMID:27907191	SynGO
Trio	Rat	postsynapse	is_active_in	IMP		155230813	PMID:27907191	SynGO
Trio	Rat	postsynapse	is_active_in	IDA		155230813	PMID:27907191	SynGO
Trio	Rat	presynaptic active zone	is_active_in	ISO	TRIO (Homo sapiens)	1624291	PMID:27907191	RGD	PMID:27907191
Trio	Rat	presynaptic active zone	is_active_in	IEA	UniProtKB:O75962 and ensembl:ENSP00000339299	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trio	Rat	Schaffer collateral - CA1 synapse	is_active_in	IDA		155230791	PMID:26858404	SynGO
Trio	Rat	Schaffer collateral - CA1 synapse	is_active_in	IMP		155230791	PMID:26858404	SynGO

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trio	Rat	ATP binding	enables	IEA	UniProtKB-KW:KW-0067	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Trio	Rat	ATP binding	enables	IEA	InterPro:IPR000719	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Trio	Rat	enzyme binding		IPI	Pam (Rattus norvegicus)	1598417		RGD
Trio	Rat	guanyl-nucleotide exchange factor activity	enables	IEA	InterPro:IPR000219	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Trio	Rat	guanyl-nucleotide exchange factor activity	enables	IBA	FB:FBgn0024277 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Trio	Rat	guanyl-nucleotide exchange factor activity	enables	IEA	UniProtKB-KW:KW-0344	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Trio	Rat	kinase activity	enables	IEA	UniProtKB-KW:KW-0418	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Trio	Rat	nucleotide binding	enables	IEA	UniProtKB-KW:KW-0547	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Trio	Rat	protein binding	enables	ISO	TRIO (Homo sapiens) and UniProtKB:O75962-4	1624291	UniProtKB:P63000-1 more ...	RGD	PMID:21422296
Trio	Rat	protein binding	enables	IPI	UniProtKB:Q62765	150521626	PMID:31801062	IntAct
Trio	Rat	protein binding	enables	ISO	TRIO (Homo sapiens)	1624291	UniProtKB:Q5VZK9 more ...	RGD	PMID:17043677 more ...
Trio	Rat	protein kinase activity	enables	IEA	InterPro:IPR000719 and InterPro:IPR008271	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Trio	Rat	protein serine kinase activity	enables	IEA	RHEA:17989	1600115	GO_REF:0000116	RHEA	GO_REF:0000116
Trio	Rat	protein serine/threonine kinase activity	enables	IEA	UniProtKB-KW:KW-0723	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Trio	Rat	protein serine/threonine kinase activity	enables	IEA	EC:2.7.11.1	1600115	GO_REF:0000003	UniProt	GO_REF:0000003
Trio	Rat	transferase activity	enables	IEA	UniProtKB-KW:KW-0808	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Kalirin and Trio proteins serve critical roles in excitatory synaptic transmission and LTP.	Herring BE and Nicoll RA, Proc Natl Acad Sci U S A. 2016 Feb 23;113(8):2264-9. doi: 10.1073/pnas.1600179113. Epub 2016 Feb 8.
4.	Synaptic Kalirin-7 and Trio Interactomes Reveal a GEF Protein-Dependent Neuroligin-1 Mechanism of Action.	Paskus JD, etal., Cell Rep. 2019 Dec 3;29(10):2944-2952.e5. doi: 10.1016/j.celrep.2019.10.115.
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Trio, a Rho Family GEF, Interacts with the Presynaptic Active Zone Proteins Piccolo and Bassoon.	Terry-Lorenzo RT, etal., PLoS One. 2016 Dec 1;11(12):e0167535. doi: 10.1371/journal.pone.0167535. eCollection 2016.
9.	Cdk5 and Trio modulate endocrine cell exocytosis.	Xin X, etal., J Cell Sci. 2004 Sep 15;117(Pt 20):4739-48. Epub 2004 Aug 25.

PMID:8889548	PMID:15669055	PMID:15715966	PMID:20519585	PMID:22666460	PMID:23230270	PMID:24859002	PMID:26323693	PMID:26721934	PMID:28928363

Trio
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	80,235,485 - 80,531,824 (-)	NCBI		GRCr8
mRatBN7.2	2	78,505,069 - 78,801,384 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	78,505,070 - 78,803,135 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	85,573,060 - 85,868,316 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	83,694,791 - 83,990,060 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	78,761,319 - 79,056,786 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	80,471,398 - 80,769,313 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	80,473,202 - 80,667,481 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	100,137,355 - 100,437,964 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	79,634,843 - 79,832,549 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	79,581,604 - 79,878,530 (-)	NCBI
Celera	2	74,141,588 - 74,436,556 (-)	NCBI		Celera
Cytogenetic Map	2	q22	NCBI

TRIO
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	14,143,342 - 14,510,204 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	14,143,342 - 14,532,128 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	14,143,451 - 14,510,313 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	14,196,829 - 14,562,458 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	14,196,828 - 14,562,457	NCBI
Celera	5	14,168,142 - 14,532,209 (+)	NCBI		Celera
Cytogenetic Map	5	p15.2	NCBI
HuRef	5	14,242,473 - 14,481,695 (+)	NCBI		HuRef
CHM1_1	5	14,143,936 - 14,509,323 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	14,080,499 - 14,449,245 (+)	NCBI		T2T-CHM13v2.0

Trio
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	27,730,735 - 28,025,954 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	27,730,737 - 28,025,934 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	27,730,649 - 28,025,848 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	27,730,651 - 28,025,848 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	27,660,404 - 27,955,603 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	27,675,376 - 27,970,437 (-)	NCBI		MGSCv36	mm8
Celera	15	28,478,779 - 28,774,257 (-)	NCBI		Celera
Cytogenetic Map	15	B1	NCBI
cM Map	15	10.4	NCBI

Trio
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	3,646,728 - 3,846,988 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955426	3,647,273 - 3,846,916 (+)	NCBI	ChiLan1.0	ChiLan1.0

TRIO
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	14,378,176 - 14,744,826 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	12,531,783 - 12,898,436 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	14,448,259 - 14,814,875 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	14,417,910 - 14,655,906 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	14,423,780 - 14,654,124 (+)	Ensembl	panpan1.1		panPan2

TRIO
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	271,572 - 505,656 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	272,290 - 505,636 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	4,764,923 - 5,120,561 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	182,486 - 534,192 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	220,773 - 415,767 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	194,569 - 548,163 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	194,407 - 546,539 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	437,086 - 788,757 (-)	NCBI		UU_Cfam_GSD_1.0

Trio
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	233,228,026 - 233,436,351 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936665	1,821,583 - 2,030,371 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936665	1,821,580 - 2,029,839 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRIO
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	3,564,171 - 3,921,553 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	3,690,831 - 3,921,554 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	4,216,390 - 4,261,443 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRIO
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	13,846,753 - 14,214,647 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	13,847,936 - 14,215,164 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666064	14,316,908 - 14,686,030 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trio
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624751	11,362,844 - 11,565,269 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624751	11,252,934 - 11,566,190 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Trio
1673 total Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
2	100153706	100153707	G	A	snv	BUF/N (KNAW)	View more Information
2	100310535	100310536	C	T	snv	DOB/Oda (KyushuU)	View more Information

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
2	80487528	80487529	C	A	snv	LE/Stm (RGD)	View more Information
2	80487749	80487750	G	A	snv	BUF/N (2020), Buf/N (MCW)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	38
Count of miRNA genes:	37
Interacting mature miRNAs:	37
Transcripts:	ENSRNOT00000016784, ENSRNOT00000049793
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578777	Stresp15	Stress response QTL 15	2	0.05	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	2	59846005	104846005	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43162366	148478373	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
2293676	Bmd19	Bone mineral density QTL 19	10.7	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	43162366	111362592	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
2293682	Bmd24	Bone mineral density QTL 24	8.9	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	2	43162366	111362592	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	38573329	122609194	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	76539322	150540526	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
61465	Bp13	Blood pressure QTL 13	3.3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	76539322	102785628	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	40067944	102785628	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
631208	Bw1	Body weight QTL1	5.09		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	2	43171017	83575226	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
5684990	Bmd82	Bone mineral density QTL 82	2.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	2	59324377	103795077	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	5873687	102844969	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
7411551	Bw131	Body weight QTL 131	29.6	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	2	67942638	112942638	Rat
1359034	Bp274	Blood pressure QTL 274			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	74786664	94359546	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	26917817	136917119	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	78665616	143657569	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	35134841	88029593	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
631500	Bp99	Blood pressure QTL 99	2.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	59324719	102755241	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	35023117	80023117	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
5684996	Bmd85	Bone mineral density QTL 85	4.7	0.024	tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	2	59324377	103795077	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	72532993	157142209	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	81754745	Rat
1558648	Smcn1	Smooth muscle cell number QTL 1		0.039	blood vessel smooth muscle cell quantity (VT:0010525)	aorta smooth muscle cell count per unit vessel length (CMO:0001646)	2	59134147	127460910	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	64366971	109366971	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	28484589	169504100	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	59324377	141596857	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	26917817	127469484	Rat

D2Rat75

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,665,616 - 78,665,758 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,631,950 - 80,632,091	NCBI	Rnor6.0
Rnor_5.0	2	100,298,393 - 100,298,534	UniSTS	Rnor5.0
RGSC_v3.4	2	79,796,831 - 79,796,972	UniSTS	RGSC3.4
RGSC_v3.4	2	79,796,790 - 79,797,113	RGD	RGSC3.4
RGSC_v3.1	2	79,741,793 - 79,741,934	RGD
Celera	2	74,301,000 - 74,301,141	UniSTS
RH 3.4 Map	2	396.9	RGD
RH 3.4 Map	2	396.9	UniSTS
RH 2.0 Map	2	399.9	RGD
SHRSP x BN Map	2	30.8998	RGD
FHH x ACI Map	2	36.4899	RGD
Cytogenetic Map	2	q22	UniSTS

D2Mco18

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	80,396,034 - 80,396,178 (+)	Marker Load Pipeline
mRatBN7.2	2	78,665,619 - 78,665,763 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,631,953 - 80,632,096	NCBI	Rnor6.0
Rnor_5.0	2	100,298,396 - 100,298,539	UniSTS	Rnor5.0
RGSC_v3.4	2	79,796,833 - 79,796,977	RGD	RGSC3.4
RGSC_v3.4	2	79,796,834 - 79,796,977	UniSTS	RGSC3.4
RGSC_v3.1	2	79,741,795 - 79,741,939	RGD
Celera	2	74,301,003 - 74,301,146	UniSTS
Cytogenetic Map	2	q22	UniSTS

D2Chm172

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	80,524,744 - 80,524,990 (+)	Marker Load Pipeline
mRatBN7.2	2	78,794,334 - 78,794,584 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,762,019 - 80,762,268	NCBI	Rnor6.0
Rnor_5.0	2	100,429,269 - 100,429,518	UniSTS	Rnor5.0
RGSC_v3.4	2	79,927,091 - 79,927,340	UniSTS	RGSC3.4
Celera	2	74,429,947 - 74,430,196	UniSTS
Cytogenetic Map	2	q22	UniSTS

D2Got381

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,580,439 - 78,580,561 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,546,796 - 80,546,915	NCBI	Rnor6.0
Rnor_5.0	2	100,213,239 - 100,213,358	UniSTS	Rnor5.0
RGSC_v3.4	2	79,711,313 - 79,711,432	UniSTS	RGSC3.4
Celera	2	74,215,838 - 74,215,957	UniSTS
Cytogenetic Map	2	q22	UniSTS

RH144049

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,532,627 - 78,532,748 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,498,950 - 80,499,070	NCBI	Rnor6.0
Rnor_5.0	2	100,165,624 - 100,165,744	UniSTS	Rnor5.0
RGSC_v3.4	2	79,662,694 - 79,662,814	UniSTS	RGSC3.4
Celera	2	74,169,077 - 74,169,197	UniSTS
RH 3.4 Map	2	395.5	UniSTS
Cytogenetic Map	2	q22	UniSTS

RH140371

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,505,210 - 78,505,373 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,471,540 - 80,471,702	NCBI	Rnor6.0
Rnor_5.0	2	100,137,497 - 100,137,659	UniSTS	Rnor5.0
RGSC_v3.4	2	79,634,981 - 79,635,143	UniSTS	RGSC3.4
Celera	2	74,141,730 - 74,141,892	UniSTS
Cytogenetic Map	2	q22	UniSTS

RH128153

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,505,672 - 78,505,853 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,472,002 - 80,472,182	NCBI	Rnor6.0
Rnor_5.0	2	100,137,959 - 100,138,139	UniSTS	Rnor5.0
RGSC_v3.4	2	79,635,443 - 79,635,623	UniSTS	RGSC3.4
Celera	2	74,142,192 - 74,142,372	UniSTS
Cytogenetic Map	2	q22	UniSTS

RH142794

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,506,240 - 78,506,359 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,472,570 - 80,472,688	NCBI	Rnor6.0
Rnor_5.0	2	100,138,527 - 100,138,645	UniSTS	Rnor5.0
RGSC_v3.4	2	79,636,011 - 79,636,129	UniSTS	RGSC3.4
Celera	2	74,142,760 - 74,142,878	UniSTS
RH 3.4 Map	2	394.0	UniSTS
Cytogenetic Map	2	q22	UniSTS

RH143590

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,618,167 - 78,618,294 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,584,500 - 80,584,626	NCBI	Rnor6.0
Rnor_5.0	2	100,250,943 - 100,251,069	UniSTS	Rnor5.0
RGSC_v3.4	2	79,749,381 - 79,749,507	UniSTS	RGSC3.4
Celera	2	74,253,556 - 74,253,682	UniSTS
RH 3.4 Map	2	396.5	UniSTS
Cytogenetic Map	2	q22	UniSTS

RH143835

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,774,446 - 78,774,724 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,742,132 - 80,742,409	NCBI	Rnor6.0
Rnor_5.0	2	100,409,382 - 100,409,659	UniSTS	Rnor5.0
RGSC_v3.4	2	79,907,204 - 79,907,481	UniSTS	RGSC3.4
Celera	2	74,410,032 - 74,410,309	UniSTS
RH 3.4 Map	2	397.8	UniSTS
Cytogenetic Map	2	q22	UniSTS

BE106322

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,698,221 - 78,698,372 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,665,909 - 80,666,059	NCBI	Rnor6.0
Rnor_5.0	2	100,333,159 - 100,333,309	UniSTS	Rnor5.0
RGSC_v3.4	2	79,830,981 - 79,831,131	UniSTS	RGSC3.4
Celera	2	74,333,391 - 74,333,541	UniSTS
RH 3.4 Map	2	396.0	UniSTS
Cytogenetic Map	2	q22	UniSTS

BE115314

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,544,060 - 78,544,226 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,510,380 - 80,510,545	NCBI	Rnor6.0
Rnor_5.0	2	100,177,054 - 100,177,219	UniSTS	Rnor5.0
RGSC_v3.4	2	79,674,062 - 79,674,227	UniSTS	RGSC3.4
Celera	2	74,179,449 - 74,179,614	UniSTS
RH 3.4 Map	2	397.0	UniSTS
Cytogenetic Map	2	q22	UniSTS

RH138486

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,513,320 - 78,513,484 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,479,650 - 80,479,813	NCBI	Rnor6.0
Rnor_5.0	2	100,145,607 - 100,145,770	UniSTS	Rnor5.0
RGSC_v3.4	2	79,643,091 - 79,643,254	UniSTS	RGSC3.4
Celera	2	74,149,840 - 74,150,003	UniSTS
RH 3.4 Map	2	385.8	UniSTS
Cytogenetic Map	2	q22	UniSTS

RH139536

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,505,210 - 78,505,390 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,471,540 - 80,471,719	NCBI	Rnor6.0
Rnor_5.0	2	100,137,497 - 100,137,676	UniSTS	Rnor5.0
RGSC_v3.4	2	79,634,981 - 79,635,160	UniSTS	RGSC3.4
Celera	2	74,141,730 - 74,141,909	UniSTS
RH 3.4 Map	2	394.1	UniSTS
Cytogenetic Map	2	q22	UniSTS

BE119929

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	78,611,740 - 78,611,910 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	80,578,073 - 80,578,242	NCBI	Rnor6.0
Rnor_5.0	2	100,244,516 - 100,244,685	UniSTS	Rnor5.0
RGSC_v3.4	2	79,742,954 - 79,743,123	UniSTS	RGSC3.4
Celera	2	74,247,129 - 74,247,298	UniSTS
RH 3.4 Map	2	394.5	UniSTS
Cytogenetic Map	2	q22	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001107658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003749226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003753540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BF522721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ211464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB546429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016784 ⟹ ENSRNOP00000016784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	78,505,070 - 78,699,794 (-)	Ensembl
Rnor_6.0 Ensembl	2	80,473,202 - 80,667,481 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093833 ⟹ ENSRNOP00000091530

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	78,505,070 - 78,803,135 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099604 ⟹ ENSRNOP00000081265

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	78,545,095 - 78,803,135 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107418 ⟹ ENSRNOP00000076435

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	78,505,070 - 78,803,135 (-)	Ensembl

RefSeq Acc Id:

NM_001107658 ⟹ NP_001101128

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	80,235,485 - 80,531,612 (-)	NCBI
mRatBN7.2	2	78,505,069 - 78,801,207 (-)	NCBI

RefSeq Acc Id:

XM_006232090 ⟹ XP_006232152

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	80,235,485 - 80,531,824 (-)	NCBI
mRatBN7.2	2	78,505,069 - 78,801,384 (-)	NCBI
Rnor_6.0	2	80,471,398 - 80,769,313 (-)	NCBI
Rnor_5.0	2	100,137,355 - 100,437,964 (-)	NCBI

Sequence:

show sequence

GAGAATCCTGGCAGGGGGCGCAGTGCCGGCCTGGAAGGCCAGTGTGGGTCGGTCACACTTGTTCCTGCTCCTCCCAGGTTTGGAGCAGCCCTGGAGGAGGAGACCTGGCCAGCTCCACGTTTCTGCAG
CCACTCCATTCCGCCCTCAGGGCTCCCAGGCGCGGCCCCGCCCCTCCATGATCCCGCCCACAACAGGCACCGCCCACCAGCCGAGCCCACGCTCCGGCCCCTAACGAAGCTCTCCGGAAATTCCCGAA
GCCCCTCTTTTTCCTTCCTCTCCTTTCCCTGCTCTCCCTTTCCTTTCACCCGGACTCCCTCGGCCGTGATTTCTCCCTCCCCCTCCTTCCTTCCCCATCGGAAAGCAAGATGGAGGCTCGCTGCTGCC
GCCGGCGTCCGTGATCGCGGAGCTTCTCCAGCCCCGGCCCCCGCCCTCGCGTGTCCGCGCCGCTGCCCGCGCCCCGGCCGGCCACACAGAGGCCGTGGCTCCGCGCGCCCGCCCCGCGCCAGGCTCGC
GGTTCCCGGGCGGTGTCCTCGTCTATGTGGGCGCGCTCCTCGGGCCGAGCCGCCGCCGCCCGCCGCCCCGGGGCTGTGCGTCCGCGCGCCGGGCGCGGGCAGCTGGGTGTTCGGCGCCGTCAGGCCAG
GCGCGGGCGGCTGGGTGCGCGGAGCTAGGGGCGCGGGGCCTGAGGCGGGCTCGTCCGCCGCCGAAGCCATGAGCGGCAGCAGCGGCGGTGCCACCGCCCCGGCCGCGTCCTCCGGCCCGGCGGCGGCG
GCCAGCGCGGCGGGCTCCGGCTGCGGGGGCGGCGCCGGCGAGGGTGCCGAGGAGGCCGCCAAGGACCTGGCCGACATCGCGGCCTTCTTTCGATCCGGGTTTCGAAAAAATGATGAAATGAAAGCTAT
GGATGTTTTGCCCATCCTGAAGGAAAAAGTCGCCTACCTTTCAGGTGGCAGAGATAAGCGTGGAGGTCCCATATTAACGTTTCCAGCCCGCAGCAATCATGATAGAATGCGGCAGGAGGACCTCAGGA
GGCTCATCTCCTATTTAGCCTGCATTCCCAGCGAGGAAGTCTGCAAGCGAGGGTTCACGGTGATTGTGGACATGCGCGGCTCCAAGTGGGACTCCATCAAACCACTGTTGAAGATCCTGCAGGAGTCC
TTCCCCTGCTGCATCCACATCGCCCTGATAATCAAGCCCGACAACTTCTGGCAGAAACAGAGGACGAATTTTGGCAGTTCCAAATTTGAATTTGAGACAAATATGGTCTCTTTAGAAGGCCTTACCAA
AGTGGTTGACCCCTCCCAGCTAACCCCTGAGTTTGATGGCTGCCTAGAGTACAACCATGAGGAATGGATAGAAATCCGAGTAGCTTTTGAGGACTACATTAGCAATGCAGCCCACATGCTGTCCCGGC
TAGAGGAACTTCAGGACGTCCTTGCAAAAAAGGAGTTACCTCAGGACCTAGAGGGGGCTCGGAACATGATTGACGAGCATTCTCAGCTGAAGAAGAAGGTGATCAAGGCTCCCATCGAGGACTTGGAC
TTAGAGGGGCAGAAGCTGCTTCAGCGGATCCAGAGCAGCGAGAGTTTTCCCAAAAAGAACTCAGGCTCGGGCAATGCAGACCTGCAGAACCTCTTGCCCAAGGTGTCCACCATGCTTGACAGGCTGCA
CTCGACTCGGCAGCACCTGCACCAGATGTGGCACGTGAGGAAACTGAAGTTGGACCAGTGCTTCCAGCTGCGGCTGTTCGAACAGGATGCTGAGAAGATGTTTGACTGGATCACACACAACAAAGGCC
TGTTTCTAAACAGCTACACGGAGATCGGGGCCAGCCACCCTCACGCCATGGAGCTTCAGACGCAGCACAATCACTTTGCTATGAACTGTATGAACGTGTATGTAAATATCAACCGCATAATGTCGGTG
GCCAATCGCCTGGTGGAGTCGGGCCACTATGCCTCTCAGCAGATTAAGCAGATCGCCAATCAGCTGGAACAGGAGTGGAAAGCGTTCGCAGCGGCCTTGGACGAGCGCAGCACCTTGTTGGACATGTC
CTCCATCTTTCATCAGAAGGCTGAGAAGTACATGAGCAATGTGGACTCGTGGTGTAAGGCCTGTGGTGAAGTAGACCTTCCCTCGGAGCTGCAGGACCTGGAAGATGCCATTCATCATCACCAGGGGA
TCTATGAGCACATCACCCTCGCTTACTCTGAGGTAAGCCAGGATGGGAAGTCTCTCCTTGATAAGCTCCAGCGCCCCCTGACCCCCGGCAGCTCTGATTCCCTCACGGCCTCTGCCAACTACTCCAAG
GCGGTGCACCATGTCTTGGATGTCATCCACGAGGTCCTGCACCACCAGCGCCAGCTCGAGAACATCTGGCAGCACCGCAAGGTTCGGCTCCACCAGAGGCTGCAGCTCTGTGTCTTCCAGCAGGACGT
TCAGCAGGTGCTGGACTGGATAGAGAACCACGGAGAAGCATTTCTGAGCAAACACACAGGCGTGGGCAAATCCCTTCACCGGGCCAGAGCTTTGCAGAAACGCCATGAGGACTTCGAGGAAGTTGCAC
AGAACACGTACACAAATGCAGATAAACTGCTAGAAGCAGCAGAGCAGCTGGCTCAGACTGGGGAATGTGACCCCGAAGAGATTTATCAGGCTGCCCATCAGCTTGAAGACCGGATACAAGACTTTGTT
CGGCGAGTTGAACAGCGGAAGATCCTGCTGGACATGTCTGTGTCATTTCACACCCATGTAAAAGAGCTCTGGACATGGCTGGAGGAGCTGCAGAAGGAACTGCTGGACGACGTGTACGCCGAGTCGGT
GGAGGCCGTCCAGGATCTCATCAAGAGATTCGGCCAGCAGCAGCAGACCACCCTGCAGGTGACAGTCAACGTGATCAAGGAAGGGGAGGACCTCATCCAGCAGCTGAGGGACTCTGCCATCTCCAGTA
ACAAGACGCCGCACAACAGCTCCATCAACCACATCGAGACGGTGCTGCAGCAGCTGGACGAGGCTCAGTCCCAGATGGAGGAGCTCTTCCAGGAACGCAAGATCAAGCTGGAACTCTTCCTGCAGCTA
CGCATATTCGAGCGGGATGCCATCGACATCATCTCGGACCTTGAGTCTTGGAATGATGAACTTTCCCAGCAAATGAACGACTTCGATACAGAGGATCTGACGATCGCTGAGCAGCGCCTGCAGCACCA
TGCGGACAAAGCCCTAACCATGAATAACTTGACTTTCGACGTCATCCACCAGGGACAGGATCTTCTGCAGTACGTCAATGAGGTCCAGGCCTCTGGTGTGGAGCTGCTTTGCGACAGAGATGTGGACA
TGGCCACTCGGGTTCAGGACCTCCTGGAGTTTCTTCACGAAAAGCAGCAGGAGTTGGATTTAGCGGCCGAGCAGCATCGGAAACACTTGGAGCAGTGTGTGCAGTTGCGCCACCTGCAGGCAGAAGTG
AAGCAGGTACTGGGCTGGATCCGGAATGGAGAGTCCATGCTGAATGCTGGGCTCATCACGGCCAGCTCGCTGCAGGAGGCCGAGCAGCTGCAGAGAGAGCACGAGCAGTTCCAGCACGCTATTGAGAA
AACACACCAGAGTGCACTGCAGGTGCAGCAGAAGGCGGAGGCCATGCTGCAGGCCAACCACTACGACATGGACATGATCCGTGACTGTGCAGAGAAGGTCGCCTCGCACTGGCAGCAGCTCATGCTCA
AGATGGAAGACCGCCTCAAGCTCGTCAACGCCTCCGTCGCCTTCTACAAGACTTCTGAGCAGGTCTGCAGTGTTCTGGAGAGCCTGGAGCAGGAGTACAAGAGAGAGGAGGACTGGTGTGGTGGAGCC
GACAAGCTGGGCCCCAATTCTGAGACTGACCACGTCACCCCAATGATTAGCAAGCACCTCGAACAGAAGGAAGCCTTCCTGAAGGCTTGCACACTGGCCAGGAGGAACGCAGATGTCTTCCTAAAATA
CCTACACAGGAACAGCGTGAGCATGCCGGGGATGGTGACACACATCAAAGCTCCAGAACAGCAAGTAAAAAATATCTTGAACGAACTCTTCCAGCGGGAAAACAGGGTATTGCATTATTGGACCATGA
GAAAAAGGCGGCTGGACCAGTGCCAGCAGTACGTGGTCTTTGAGAGGAGTGCCAAGCAGGCATTAGAATGGATCCACGACAATGGGGAGTTCTATCTTTCCACACATACCTCAACAGGGTCCAGCATT
CAGCATACACAGGAGCTGTTGAAAGAACATGAAGAGTTTCAGATAACTGCCAAGCAAACCAAAGAGAGGGTGAAGCTATTGATACAGCTGGCTGATGGCTTTTGTGAAAAAGGGCATGCCCATGCAGC
AGAAATTAAAAAATGTGTGACCGCAGTGGATAAGAGGTACAGAGATTTCTCTCTGCGCATGGAGAAGTACCGGACCTCTTTGGAGAAAGCCCTGGGGATTTCTTCAGATTCCAACAAATCGAGTAAAA
GCCTGCAGTTGGACATCATCCCTGCCAGTATCCCCGGGTCAGAGGTGAAGCTTCGGGATGCTGCTCACGAACTCAATGAAGAGAAGCGCAAGTCTGCCCGCAGGAAAGAGTTCATAATGGCTGAGTTA
ATTCAAACCGAAAAGGCTTATGTAAGAGACCTTCGAGAATGTATGGATACCTACCTGTGGGAAATGACCAGCGGAGTGGAGGAGATCCCGCCCGGCATCGTCAACAAGGAGCTCATCATCTTCGGGAA
CATGCAGGAGATCTACGAGTTCCATAACAACATCTTCCTGAAGGAGCTGGAGAAGTACGAGCAGCTCCCAGAGGACGTGGGGCACTGCTTTGTCACCTGGGCAGACAAGTTTCAGATGTATGTCACAT
ACTGCAAAAATAAACCTGATTCTACGCAGCTGATCCTGGAACACGCAGGGTCCTACTTTGACGAGATCCAGCAGCGGCATGGGTTAGCCAATTCCATCTCTTCCTACCTGATCAAACCAGTTCAGCGA
ATAACAAAGTACCAGCTCCTTTTAAAAGAGCTGCTCACATGCTGTGAAGAAGGAAAGGGGGAGATTAAAGATGGCCTCGAGGTGATGCTCAGTGTGCCCAAGCGAGCCAATGATGCCATGCACCTCAG
CATGCTGGAAGGGTTTGATGAAAACATTGAGTCTCAGGGAGAGCTCATCCTGCAGGAGTCCTTCCAAGTGTGGGACCCAAAAACCTTAATTCGGAAGGGTCGAGAACGCCATCTCTTCCTTTTTGAAA
TGTCCTTAGTGTTCAGTAAAGAAGTGAAAGACTCCAGCGGGAGAAGCAAGTACCTGTACAAAAGCAAGCTGTTTACCTCAGAGTTGGGTGTCACGGAACATGTTGAAGGAGATCCTTGCAAATTTGCA
CTGTGGGTGGGGAGGACACCAACTTCAGATAATAAAATTGTCCTTAAGGCCTCCAGTATCGAGAACAAACAGGACTGGATAAAGCACATCCGTGAGGTGATACAGGAGAGGACGGTGCACCTGAGAGG
AGCCCTGAAGGAGCCCATCCACATCCCCAAGACGGCTCCCGCAGCAAGGCAGAAGGGGAGGAGGGATGGAGAGGACCTGGACAGCCAAGGGGACGGCAGCAGCCAGCCCGACACCATTTCCATTGCCT
CCCGGACATCACAGAACACACTGGACAGTGACAAGCTTTCTGGCGGCTGCGAGCTGACAGTGGTGATCCATGACTTCACAGCTTGCAACAGCAATGAGCTGACCATCCGGCGAGGCCAGACAGTGGAG
GTTCTCGAACGGCCTCACGACAAGCCCGACTGGTGTCTGGTGCGCACCACTGATAGGTCCCCTGCAGCTGAAGGCCTCGTGCCCTGTGGCTCACTGTGCATTGCCCACTCACGAAGTAGCATGGAGAT
GGAGGGCATCTTCAACCACAAAGACTCACTGTCCGTCTCCAGTAATGACGCCAGCCCACCGGCCTCTGTGGCCTCCCTTCAACCCCACATGATGGGAGCACAGAGTTCACCAGGTCCCAAGCGGCCGG
GCAACACCCTGCGCAAGTGGCTCACAAGCCCCGTACGGCGGCTCAGCAGTGGCAAGGCCGATGGACATGCGAAGAAGCTGGCCCACAAGCACAAGAAGAGCAGGGAGGTCCGGAAGAGTGCGGACGCT
GGATCACAGAAGGATTCAGATGACAGCGCTGCCACCCCACAGGATGAGACCATCGAAGAGAGAGGACGGAACGAGGGCCTCAGCAGTGGTACGCTGTCCAAATCCTCGTCCTCGGGCATGCAGAGCTG
CGGAGAAGAAGAAGGAGAGGAGGGCGCCGACGCTGTACCACTGCCTCCGCCCATGGCCATCCAGCAGCACAGCCTCCTTCAGCCAGACTCGCAGGATGACAAGGCCTCTTCGAGGTTATTAGTCCGCC
CCACCAGCTCTGAGACTCCCAGTGCGGCTGAGCTCGTCAGTGCGATTGAAGAACTCGTGAAGAGCAAAATGGCGCTGGAGGACCGCCCTAGCTCACTGCTTGTTGACCAGGGAGACAGTAGCAGCCCG
TCCTTCAATCCCTCAGACAATTCTCTCCTCTCATCCTCCTCGCCCATTGACGAGATGGAAGAAAGAAAATGCAGCCTCTCTCTAAAGAGAAGACACTATGTTTTGCAAGAATTAGTGGAGACAGAGCG
AGACTATGTGCGGGACCTTGGATGTGTGGTTGAGGGCTACATGGCGCTGATGAAGGAAGACGGCGTTCCTGATGACATGAAGGGGAAAGACAAGATCGTGTTTGGCAACATCCATCAGATTTACGACT
GGCACAGAGACTTTTTTTTAGGAGAGTTGGAGAAGTGCCTTGAAGATCCAGAAAAACTAGGATCCCTTTTTGTAAAACACGAGAGAAGGTTGCACATGTACATAGTTTATTGTCAAAATAAACCAAAG
TCTGAGCACATTGTCTCCGAGTACATCGACACCTTTTTTGAGGACTTAAAGCAGCGCCTGGGCCACAGACTGCAGCTCACTGATCTGTTGATCAAACCTGTGCAGAGAATCATGAAGTACCAGCTGCT
CCTGAAGGACTTCCTCAAGTACTCAAAAAAAGCTAGCCTGGACACGTCCGAATTAGAGAAAGCTGTAGAGGTCATGTGCATAGTGCCGAAGCGCTGCAACGACATGATGAACGTCGGGCGGCTGCAAG
GATTTGACGGTAAAATTGTTGCCCAGGGTAAACTGCTCTTACAGGACACATTCCTGGTCACAGACCAAGATGCAGGGCTTCTGCCCCGATGCAAAGAGAGGCGGGTTTTCCTCTTTGAACAGATTGTC
ATATTCAGCGAACCGCTTGATAAGAAAAAGGGCTTTTCCATGCCAGGATTTCTGTTCAAGAACAGTATCAAGGTGAGTTGCCTTTGCCTGGAGGAGAATGTGGAGAGCGATCCCTGTAAGTTTGCCCT
GACATCCAGGACGGGCGATGCCGTGGAGACCTTCATTTTGCATTCATCCAGTCCAAGTGTCCGACAAACGTGGATCCATGAAATCAACCAAATCTTAGAAAACCAGCGCAACTTTTTAAATGCCTTGA
CATCACCCATCGAGTACCAGAGGAACCATAGCGGGGGCGGCGGCAGTGGCAGCGGGGGCAGCAGCGGCGGGGGCGGGGGCAGCGGTGGCAGCGGGGCCTCCAGTGGAGGCAGCAGCAGCCATGGCAGT
GGCCCCAGCAGCTGCAGCAGTGGCCCCAGCTCGAGCAGGAGCAGGCCCTCCAGGATCCCACAGCCTGTCAGACACCACCCCCCCATGCTGGTCTCCTCTGCAGCCTCAAGCCAGGCAGAGGCAGACAA
GATGTCAGGTATGTCTGCTCCCAGCCCCTCACTGCCTACCCCCAGCAACAGCCTGGCCCTCGAGGCCAGCCTTGGCCAGCCCAGCAGGCTCCCCCTGAGTGGAGACTCCGAAGGTCATGAGCGAGAGA
CAGAACCCATTCCCAAGATGAAGGTGATGGAGAGCCCCCGGAAGGCCCTGGGGAGTACTTCCGGTACAAGCCAAGATGGAAACACCAAGGATGCCCGGGGGAACCTGGGCCCGCTGCCTCTGGGCAAG
ACTAGGCCGGGGGCCGTCTCGCCGCTGAACTCTCCTCTCTCCACCACGTTCCCTTCTCCTTTTGGCAAGGAGGCCTTTCCTCCCAGCAGCCCCCTGCAGAAGGGGGGCTCCTTCTGGAGCTCCATTCC
TGCTTCCCCTGCCAGCCGGCCAAGCTCCTTCACCTTCCCGGGGGACAGTGACTCCCTCCAGCGACAGACGCACCGCCATGCAGCCCCCAGCAAGGACACGGACCGCATGAGCACGTGCTCCTCGGCCA
GCGAGCAGTCCGTGCAGTCCACTCAGAGCAACGGGAGTGAAAGCAGCAGCAGTAGCAACATCTCCACCATGCTGGTGACACACGAGTACACGGCAGTGAAGGAGGATGAGATAAACGTCTATCAAGGA
GAGGTCGTTCAAATTCTGGCCAGCAACCAGCAGAACATGTTTCTGGTGTTCCGAGCCGCCACTGACCAGTGCCCCGCAGCCGAGGGTTGGATTCCAGGCTTCGTCTTGGGCCATACGAGTGCAGTTAT
CATGGAGAACCCGGACGGGACTTTCAAGAAGTCAACATCTTGGCACACAGCACTCCGTTTAAGGAAGAAGTCTGAGAAGAAAGATAAAGACGGCAAAAGGGACGGCAAGTTGGAGAACGGGTACAGGA
AGCCACGAGAAGGGCTCAGTAACAAGCTTCTCAACCCCAACTATATCTATGACGTTCCCCCAGAATTCGTTATCCCATTGAGCGAGGTCACATGTGAGACAGGGGAGACCGTTGTTTTTAGATGTCGT
GTCTGTGGCCGCCCCAAGGCCTCAATCACCTGGAAGGGCCCTGAACACAACACTTTGAACAACGATGACCACTACAACATCTCCTACAGTGACGTTGGGGAGGCCACTCTGAAGATCATTGGTGTGAG
CACAGAAGATGATGGTGTCTACACCTGCATCGCTGTGAACGACATGGGTTCAGCCTCGTCTTCTGCCAGTCTGAGGGTTCTAGGTCCAGGGAGTGATGGGATCGTGGTGACCTGGAAGGACAACTTCG
ACGCCTTCTACAGTGAGGTGGCTGAGCTCGGCAGGGGCAGATTTGCTGTAGTTAAGAAATGTGACCAGAAGGGAACCAAACGAGCAGTGGCCACAAAGTTTGTGAACAAGAAGTTGATGAAGCGTGAC
CAGGTCACTCATGAGCTTGGCATCCTGCAGAACCTCCAGCACCCCCTCTTCGTGAGCCTTCTAGACACCTTCGAGACCCCCACCAGTTACGTCCTGGTTTTGGAATTGGCTGACCAAGGTCGCCTCCT
AGACTGTGTGGTACGATGGGGAAGTCTCACCGAAGGGAAGGTCAGAGCGCACCTGGGGGAAGTTCTGGAAGCCGTCCGATACCTTCACAACTGCAGGATAGCACACCTGGACCTAAAGCCTGAGAACA
TCTTGGTGGATCAGAGTTTGGCCAAGCCAACCATTAAACTCACTGACTTTGGAGACGCTGTCCAGCTCAACACCACCTACTACATCCACCAGTTGCTGGGGAACCCCGAGTTTGCAGCCCCGGAAATC
ATTCTTGGGAACCCTGTCTCCCTGACCGCGGACACGTGGAGCGTTGGGGTGCTCACGTACGTGCTGCTCAGCGGCGTGTCCCCCTTCTTGGATGACAGCGTGGAAGAGACCTGCCTGAACATTTGCCG
ACTGGACTTCAGCTTCCCAGAGGACTACTTTCAAGGAGTTAGCCAGAAGGCCAAGGAATTCGTGTGCTTCCTCCTGCAGGAGGACCCCGCCAAGCGTCCCTCGGCTGCACTGGCCCTACAGGAGCAGT
GGCTGCAGGCAGGTAACGGCAGCGGCAAAGGCATGGGCGTCCTCGACACGTCCAGACTGACCTCCTTCATTGAGCGGCGCAAACACCAGAATGATGTTCGACCTATCCGTAGCATTAAAAACTTCTTA
CAGAGCAGGCTTCTGCCTAGAGTTTGACCTATCTTGAAGTTCTTTCTCATTCTCTTTCACCTGCCAATCAGCTGTTAATTTGAATTTTGAAGAGGAAACCAAACCAAACTAACTGGCCGGCCGCCGGC
CGTTCATCGTGTGAAATGGCATTCCAAGTGAGCTGTGCTCGGCCGCGCTCGGGCTCAGAGCTGCACGCTGCACTGGGGTGGAGGACCTTCAGTTACGCTCTGCACAGGCAGAGATCACATTGCTGTAC
CACAGTATCTTATTCAGGTTCCTGCAAAAAAATAAATAAATAAAGAGATACTTTTTTAAACGAACATGGATAGAATTTTGCAAATTTAACATTTTCAAGATTTATTCAAGGACACCTATGCCTATGTT
CAGACCACTGGTGTTACACCAAACTGAGATACTGTGCATTTCTAGGAAAGACGAGTCAGGTGGTAGCCACTCCCATGGCCTCGGCCAGTGCTAGGCGTCCACGTGGCACTGAGCTTTTCCAACGGCCT
CGTCTGGATACAACTTGCCGGGCACCAGACTTGGCTTCTGAAACGTGCATTCAACCTCAATCTTTTGCATAAAATGTAATGAATGGTTTTGCTCTGATGAAATGTAGGCCTTACTTGTACATAAGACT
CTTCCTGCCTTTTGTCTGGCGTCCCCCATCCCTTCCCCTCCTACCCACCACCTGGGCCTTCCTCTCGGGGGTCTGATGGGGTCTGCCCATCCAATGGAGACTTTAGGCTGGGTCCAGTCCCACTGCCC
CCTCCCTAGCCCCACCCCAAGCCGTCAATCAGATTGTTGAACGGTATACAGTCAGATGAAAATACTGTAAATGCACTCATTGGGGTTTTTTTTTTTTTTTTGGTTTTTTGTTTGTTTTGTTTTTTTTT
TAATTTCATACCATGTGCAATGTTGTGACTTTAACATTTTCTGCAACTATTTATGAAGACTTCTGTTGTACCTGTAATAAATATATAGAAAAAGCACATTCTTCGCAAGTGAGCTTTATGGTTCTGTG
TGTGTTGGGGGTGGGTCGTAGCCCTGTGCCATCAGTCAAGGATACTTAACTCTTCGTGAAATTTGTCAGCTTTGAGGACTGTAAAAAGTGATTTCATACTCTGAATATAAAACTGGATAATAGGGTAA
TGTTTTAAATTTTATTATGCTATTATTCAGAATGCCAAAGTATTATTTTTTTCCCAGAAATCAGTCTGAACATTTACTACTTTTTAGACTTTTTGACATTCAACTTTCTGTATAAAAATAATTGGCTG
GATTTTAAGCTTTTGGTAAGAAAGCCAATCAAGTACTGGCCGCCCCGAGGCTGGTGCACAGTGCCCGAGTCACGTGGCAGAGCTGGCTCTGGTGCGGGAAGTCCTTCACCACAGAAGTTGGATTTCTG
GCACACTTGGATTTTTCTGGATGTCTTTTTACCTTTATTGTGTGAAATACACTAAAAAAGAGACCGGCTTGCTTCCCAAGGCAGCGAGACATCTGGGTCGTGAGCCATAAACGGGCATAACTCAGCTT
TGCAGTTTCCAACGTATTTTATTTATTCTTCTGTTGGGTTTTTGTTTGTTTCTTTGTAAAATTGTACAGAAACTTTTTAAGAAAAATTGGATTCAAAAACTGGATGTGTATCTGTAACCTCATAACTT
TTATTTGTGTACCGTCCCTTTGATTATTTCAGTTAAAAGTTTTTACATTATTTTTTTTGCATGTATATTTCTTTGTACAGAGACCTTACATGTTTACACAGTATGATGTGATGTAAATATTTTATTTT
GCCATCAGTTATTTTAAGAAATTAAACATATTTGCCTGA

hide sequence

RefSeq Acc Id:

XM_006232091 ⟹ XP_006232153

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	80,235,485 - 80,531,127 (-)	NCBI
mRatBN7.2	2	78,505,069 - 78,800,738 (-)	NCBI
Rnor_6.0	2	80,473,202 - 80,767,997 (-)	NCBI
Rnor_5.0	2	100,137,355 - 100,437,964 (-)	NCBI

Sequence:

show sequence

TGTCATCCAGCCTTGGCGGTACAGTTCTGTGAAACCGGGCAGCCATCGCACCTTAGCCCAGGAA
CCGAGGAAGGTGGCTGAGCTGAGGCGGCGGTCAGGTCCAGCCATTGTCTCTTGGGGGAGGCCAGGGAAGGACATCTGGGACCGTGGTGGTTCTAGGGAGAGGCGTGGGACTAGGGCTGGCGAGCACTG
CGTGGGTGGCGTGGACCTGGAGGCAGCTCGGGGCAGCTCGGGGTCCGCTCTGGCGAGCAGGAGGTGGCCGAGGAGGAGGCTAGCCCGGAGCCCAGCGGTCGGGAGGGGCGCTGGTGTGCGGCGCAGGG
GGCGTGACGGGGCGTCCCGGGGACCCCGGTAACGGCACCTCCTCCAAGCCCGGCCCGGCCCAGATCCCGCGCGAGCCCGGCTAGCGTCCGCACGTCCCTGCGTGCCGTCCGGTTTGCTTGCGCGCCCG
GGAGGCGGCGGAGGGCAGCGGCGGCGGTCGGGGGCCTGCAGCTCGGGGAGCAGTCCCTGGCGGGCCAGGCTTGGGAGTGAGGATGCAGGCTCCGCGCTGGAGAGCCGGAGAGGGCGGCCCAGGGTTTC
GAAAAAATGATGAAATGAAAGCTATGGATGTTTTGCCCATCCTGAAGGAAAAAGTCGCCTACCTTTCAGGTGGCAGAGATAAGCGTGGAGGTCCCATATTAACGTTTCCAGCCCGCAGCAATCATGAT
AGAATGCGGCAGGAGGACCTCAGGAGGCTCATCTCCTATTTAGCCTGCATTCCCAGCGAGGAAGTCTGCAAGCGAGGGTTCACGGTGATTGTGGACATGCGCGGCTCCAAGTGGGACTCCATCAAACC
ACTGTTGAAGATCCTGCAGGAGTCCTTCCCCTGCTGCATCCACATCGCCCTGATAATCAAGCCCGACAACTTCTGGCAGAAACAGAGGACGAATTTTGGCAGTTCCAAATTTGAATTTGAGACAAATA
TGGTCTCTTTAGAAGGCCTTACCAAAGTGGTTGACCCCTCCCAGCTAACCCCTGAGTTTGATGGCTGCCTAGAGTACAACCATGAGGAATGGATAGAAATCCGAGTAGCTTTTGAGGACTACATTAGC
AATGCAGCCCACATGCTGTCCCGGCTAGAGGAACTTCAGGACGTCCTTGCAAAAAAGGAGTTACCTCAGGACCTAGAGGGGGCTCGGAACATGATTGACGAGCATTCTCAGCTGAAGAAGAAGGTGAT
CAAGGCTCCCATCGAGGACTTGGACTTAGAGGGGCAGAAGCTGCTTCAGCGGATCCAGAGCAGCGAGAGTTTTCCCAAAAAGAACTCAGGCTCGGGCAATGCAGACCTGCAGAACCTCTTGCCCAAGG
TGTCCACCATGCTTGACAGGCTGCACTCGACTCGGCAGCACCTGCACCAGATGTGGCACGTGAGGAAACTGAAGTTGGACCAGTGCTTCCAGCTGCGGCTGTTCGAACAGGATGCTGAGAAGATGTTT
GACTGGATCACACACAACAAAGGCCTGTTTCTAAACAGCTACACGGAGATCGGGGCCAGCCACCCTCACGCCATGGAGCTTCAGACGCAGCACAATCACTTTGCTATGAACTGTATGAACGTGTATGT
AAATATCAACCGCATAATGTCGGTGGCCAATCGCCTGGTGGAGTCGGGCCACTATGCCTCTCAGCAGATTAAGCAGATCGCCAATCAGCTGGAACAGGAGTGGAAAGCGTTCGCAGCGGCCTTGGACG
AGCGCAGCACCTTGTTGGACATGTCCTCCATCTTTCATCAGAAGGCTGAGAAGTACATGAGCAATGTGGACTCGTGGTGTAAGGCCTGTGGTGAAGTAGACCTTCCCTCGGAGCTGCAGGACCTGGAA
GATGCCATTCATCATCACCAGGGGATCTATGAGCACATCACCCTCGCTTACTCTGAGGTAAGCCAGGATGGGAAGTCTCTCCTTGATAAGCTCCAGCGCCCCCTGACCCCCGGCAGCTCTGATTCCCT
CACGGCCTCTGCCAACTACTCCAAGGCGGTGCACCATGTCTTGGATGTCATCCACGAGGTCCTGCACCACCAGCGCCAGCTCGAGAACATCTGGCAGCACCGCAAGGTTCGGCTCCACCAGAGGCTGC
AGCTCTGTGTCTTCCAGCAGGACGTTCAGCAGGTGCTGGACTGGATAGAGAACCACGGAGAAGCATTTCTGAGCAAACACACAGGCGTGGGCAAATCCCTTCACCGGGCCAGAGCTTTGCAGAAACGC
CATGAGGACTTCGAGGAAGTTGCACAGAACACGTACACAAATGCAGATAAACTGCTAGAAGCAGCAGAGCAGCTGGCTCAGACTGGGGAATGTGACCCCGAAGAGATTTATCAGGCTGCCCATCAGCT
TGAAGACCGGATACAAGACTTTGTTCGGCGAGTTGAACAGCGGAAGATCCTGCTGGACATGTCTGTGTCATTTCACACCCATGTAAAAGAGCTCTGGACATGGCTGGAGGAGCTGCAGAAGGAACTGC
TGGACGACGTGTACGCCGAGTCGGTGGAGGCCGTCCAGGATCTCATCAAGAGATTCGGCCAGCAGCAGCAGACCACCCTGCAGGTGACAGTCAACGTGATCAAGGAAGGGGAGGACCTCATCCAGCAG
CTGAGGGACTCTGCCATCTCCAGTAACAAGACGCCGCACAACAGCTCCATCAACCACATCGAGACGGTGCTGCAGCAGCTGGACGAGGCTCAGTCCCAGATGGAGGAGCTCTTCCAGGAACGCAAGAT
CAAGCTGGAACTCTTCCTGCAGCTACGCATATTCGAGCGGGATGCCATCGACATCATCTCGGACCTTGAGTCTTGGAATGATGAACTTTCCCAGCAAATGAACGACTTCGATACAGAGGATCTGACGA
TCGCTGAGCAGCGCCTGCAGCACCATGCGGACAAAGCCCTAACCATGAATAACTTGACTTTCGACGTCATCCACCAGGGACAGGATCTTCTGCAGTACGTCAATGAGGTCCAGGCCTCTGGTGTGGAG
CTGCTTTGCGACAGAGATGTGGACATGGCCACTCGGGTTCAGGACCTCCTGGAGTTTCTTCACGAAAAGCAGCAGGAGTTGGATTTAGCGGCCGAGCAGCATCGGAAACACTTGGAGCAGTGTGTGCA
GTTGCGCCACCTGCAGGCAGAAGTGAAGCAGGTACTGGGCTGGATCCGGAATGGAGAGTCCATGCTGAATGCTGGGCTCATCACGGCCAGCTCGCTGCAGGAGGCCGAGCAGCTGCAGAGAGAGCACG
AGCAGTTCCAGCACGCTATTGAGAAAACACACCAGAGTGCACTGCAGGTGCAGCAGAAGGCGGAGGCCATGCTGCAGGCCAACCACTACGACATGGACATGATCCGTGACTGTGCAGAGAAGGTCGCC
TCGCACTGGCAGCAGCTCATGCTCAAGATGGAAGACCGCCTCAAGCTCGTCAACGCCTCCGTCGCCTTCTACAAGACTTCTGAGCAGGTCTGCAGTGTTCTGGAGAGCCTGGAGCAGGAGTACAAGAG
AGAGGAGGACTGGTGTGGTGGAGCCGACAAGCTGGGCCCCAATTCTGAGACTGACCACGTCACCCCAATGATTAGCAAGCACCTCGAACAGAAGGAAGCCTTCCTGAAGGCTTGCACACTGGCCAGGA
GGAACGCAGATGTCTTCCTAAAATACCTACACAGGAACAGCGTGAGCATGCCGGGGATGGTGACACACATCAAAGCTCCAGAACAGCAAGTAAAAAATATCTTGAACGAACTCTTCCAGCGGGAAAAC
AGGGTATTGCATTATTGGACCATGAGAAAAAGGCGGCTGGACCAGTGCCAGCAGTACGTGGTCTTTGAGAGGAGTGCCAAGCAGGCATTAGAATGGATCCACGACAATGGGGAGTTCTATCTTTCCAC
ACATACCTCAACAGGGTCCAGCATTCAGCATACACAGGAGCTGTTGAAAGAACATGAAGAGTTTCAGATAACTGCCAAGCAAACCAAAGAGAGGGTGAAGCTATTGATACAGCTGGCTGATGGCTTTT
GTGAAAAAGGGCATGCCCATGCAGCAGAAATTAAAAAATGTGTGACCGCAGTGGATAAGAGGTACAGAGATTTCTCTCTGCGCATGGAGAAGTACCGGACCTCTTTGGAGAAAGCCCTGGGGATTTCT
TCAGATTCCAACAAATCGAGTAAAAGCCTGCAGTTGGACATCATCCCTGCCAGTATCCCCGGGTCAGAGGTGAAGCTTCGGGATGCTGCTCACGAACTCAATGAAGAGAAGCGCAAGTCTGCCCGCAG
GAAAGAGTTCATAATGGCTGAGTTAATTCAAACCGAAAAGGCTTATGTAAGAGACCTTCGAGAATGTATGGATACCTACCTGTGGGAAATGACCAGCGGAGTGGAGGAGATCCCGCCCGGCATCGTCA
ACAAGGAGCTCATCATCTTCGGGAACATGCAGGAGATCTACGAGTTCCATAACAACATCTTCCTGAAGGAGCTGGAGAAGTACGAGCAGCTCCCAGAGGACGTGGGGCACTGCTTTGTCACCTGGGCA
GACAAGTTTCAGATGTATGTCACATACTGCAAAAATAAACCTGATTCTACGCAGCTGATCCTGGAACACGCAGGGTCCTACTTTGACGAGATCCAGCAGCGGCATGGGTTAGCCAATTCCATCTCTTC
CTACCTGATCAAACCAGTTCAGCGAATAACAAAGTACCAGCTCCTTTTAAAAGAGCTGCTCACATGCTGTGAAGAAGGAAAGGGGGAGATTAAAGATGGCCTCGAGGTGATGCTCAGTGTGCCCAAGC
GAGCCAATGATGCCATGCACCTCAGCATGCTGGAAGGGTTTGATGAAAACATTGAGTCTCAGGGAGAGCTCATCCTGCAGGAGTCCTTCCAAGTGTGGGACCCAAAAACCTTAATTCGGAAGGGTCGA
GAACGCCATCTCTTCCTTTTTGAAATGTCCTTAGTGTTCAGTAAAGAAGTGAAAGACTCCAGCGGGAGAAGCAAGTACCTGTACAAAAGCAAGCTGTTTACCTCAGAGTTGGGTGTCACGGAACATGT
TGAAGGAGATCCTTGCAAATTTGCACTGTGGGTGGGGAGGACACCAACTTCAGATAATAAAATTGTCCTTAAGGCCTCCAGTATCGAGAACAAACAGGACTGGATAAAGCACATCCGTGAGGTGATAC
AGGAGAGGACGGTGCACCTGAGAGGAGCCCTGAAGGAGCCCATCCACATCCCCAAGACGGCTCCCGCAGCAAGGCAGAAGGGGAGGAGGGATGGAGAGGACCTGGACAGCCAAGGGGACGGCAGCAGC
CAGCCCGACACCATTTCCATTGCCTCCCGGACATCACAGAACACACTGGACAGTGACAAGCTTTCTGGCGGCTGCGAGCTGACAGTGGTGATCCATGACTTCACAGCTTGCAACAGCAATGAGCTGAC
CATCCGGCGAGGCCAGACAGTGGAGGTTCTCGAACGGCCTCACGACAAGCCCGACTGGTGTCTGGTGCGCACCACTGATAGGTCCCCTGCAGCTGAAGGCCTCGTGCCCTGTGGCTCACTGTGCATTG
CCCACTCACGAAGTAGCATGGAGATGGAGGGCATCTTCAACCACAAAGACTCACTGTCCGTCTCCAGTAATGACGCCAGCCCACCGGCCTCTGTGGCCTCCCTTCAACCCCACATGATGGGAGCACAG
AGTTCACCAGGTCCCAAGCGGCCGGGCAACACCCTGCGCAAGTGGCTCACAAGCCCCGTACGGCGGCTCAGCAGTGGCAAGGCCGATGGACATGCGAAGAAGCTGGCCCACAAGCACAAGAAGAGCAG
GGAGGTCCGGAAGAGTGCGGACGCTGGATCACAGAAGGATTCAGATGACAGCGCTGCCACCCCACAGGATGAGACCATCGAAGAGAGAGGACGGAACGAGGGCCTCAGCAGTGGTACGCTGTCCAAAT
CCTCGTCCTCGGGCATGCAGAGCTGCGGAGAAGAAGAAGGAGAGGAGGGCGCCGACGCTGTACCACTGCCTCCGCCCATGGCCATCCAGCAGCACAGCCTCCTTCAGCCAGACTCGCAGGATGACAAG
GCCTCTTCGAGGTTATTAGTCCGCCCCACCAGCTCTGAGACTCCCAGTGCGGCTGAGCTCGTCAGTGCGATTGAAGAACTCGTGAAGAGCAAAATGGCGCTGGAGGACCGCCCTAGCTCACTGCTTGT
TGACCAGGGAGACAGTAGCAGCCCGTCCTTCAATCCCTCAGACAATTCTCTCCTCTCATCCTCCTCGCCCATTGACGAGATGGAAGAAAGAAAATGCAGCCTCTCTCTAAAGAGAAGACACTATGTTT
TGCAAGAATTAGTGGAGACAGAGCGAGACTATGTGCGGGACCTTGGATGTGTGGTTGAGGGCTACATGGCGCTGATGAAGGAAGACGGCGTTCCTGATGACATGAAGGGGAAAGACAAGATCGTGTTT
GGCAACATCCATCAGATTTACGACTGGCACAGAGACTTTTTTTTAGGAGAGTTGGAGAAGTGCCTTGAAGATCCAGAAAAACTAGGATCCCTTTTTGTAAAACACGAGAGAAGGTTGCACATGTACAT
AGTTTATTGTCAAAATAAACCAAAGTCTGAGCACATTGTCTCCGAGTACATCGACACCTTTTTTGAGGACTTAAAGCAGCGCCTGGGCCACAGACTGCAGCTCACTGATCTGTTGATCAAACCTGTGC
AGAGAATCATGAAGTACCAGCTGCTCCTGAAGGACTTCCTCAAGTACTCAAAAAAAGCTAGCCTGGACACGTCCGAATTAGAGAAAGCTGTAGAGGTCATGTGCATAGTGCCGAAGCGCTGCAACGAC
ATGATGAACGTCGGGCGGCTGCAAGGATTTGACGGTAAAATTGTTGCCCAGGGTAAACTGCTCTTACAGGACACATTCCTGGTCACAGACCAAGATGCAGGGCTTCTGCCCCGATGCAAAGAGAGGCG
GGTTTTCCTCTTTGAACAGATTGTCATATTCAGCGAACCGCTTGATAAGAAAAAGGGCTTTTCCATGCCAGGATTTCTGTTCAAGAACAGTATCAAGGTGAGTTGCCTTTGCCTGGAGGAGAATGTGG
AGAGCGATCCCTGTAAGTTTGCCCTGACATCCAGGACGGGCGATGCCGTGGAGACCTTCATTTTGCATTCATCCAGTCCAAGTGTCCGACAAACGTGGATCCATGAAATCAACCAAATCTTAGAAAAC
CAGCGCAACTTTTTAAATGCCTTGACATCACCCATCGAGTACCAGAGGAACCATAGCGGGGGCGGCGGCAGTGGCAGCGGGGGCAGCAGCGGCGGGGGCGGGGGCAGCGGTGGCAGCGGGGCCTCCAG
TGGAGGCAGCAGCAGCCATGGCAGTGGCCCCAGCAGCTGCAGCAGTGGCCCCAGCTCGAGCAGGAGCAGGCCCTCCAGGATCCCACAGCCTGTCAGACACCACCCCCCCATGCTGGTCTCCTCTGCAG
CCTCAAGCCAGGCAGAGGCAGACAAGATGTCAGGTATGTCTGCTCCCAGCCCCTCACTGCCTACCCCCAGCAACAGCCTGGCCCTCGAGGCCAGCCTTGGCCAGCCCAGCAGGCTCCCCCTGAGTGGA
GACTCCGAAGGTCATGAGCGAGAGACAGAACCCATTCCCAAGATGAAGGTGATGGAGAGCCCCCGGAAGGCCCTGGGGAGTACTTCCGGTACAAGCCAAGATGGAAACACCAAGGATGCCCGGGGGAA
CCTGGGCCCGCTGCCTCTGGGCAAGACTAGGCCGGGGGCCGTCTCGCCGCTGAACTCTCCTCTCTCCACCACGTTCCCTTCTCCTTTTGGCAAGGAGGCCTTTCCTCCCAGCAGCCCCCTGCAGAAGG
GGGGCTCCTTCTGGAGCTCCATTCCTGCTTCCCCTGCCAGCCGGCCAAGCTCCTTCACCTTCCCGGGGGACAGTGACTCCCTCCAGCGACAGACGCACCGCCATGCAGCCCCCAGCAAGGACACGGAC
CGCATGAGCACGTGCTCCTCGGCCAGCGAGCAGTCCGTGCAGTCCACTCAGAGCAACGGGAGTGAAAGCAGCAGCAGTAGCAACATCTCCACCATGCTGGTGACACACGAGTACACGGCAGTGAAGGA
GGATGAGATAAACGTCTATCAAGGAGAGGTCGTTCAAATTCTGGCCAGCAACCAGCAGAACATGTTTCTGGTGTTCCGAGCCGCCACTGACCAGTGCCCCGCAGCCGAGGGTTGGATTCCAGGCTTCG
TCTTGGGCCATACGAGTGCAGTTATCATGGAGAACCCGGACGGGACTTTCAAGAAGTCAACATCTTGGCACACAGCACTCCGTTTAAGGAAGAAGTCTGAGAAGAAAGATAAAGACGGCAAAAGGGAC
GGCAAGTTGGAGAACGGGTACAGGAAGCCACGAGAAGGGCTCAGTAACAAGGTATCTGTGAAGCTTCTCAACCCCAACTATATCTATGACGTTCCCCCAGAATTCGTTATCCCATTGAGCGAGGTCAC
ATGTGAGACAGGGGAGACCGTTGTTTTTAGATGTCGTGTCTGTGGCCGCCCCAAGGCCTCAATCACCTGGAAGGGCCCTGAACACAACACTTTGAACAACGATGACCACTACAACATCTCCTACAGTG
ACGTTGGGGAGGCCACTCTGAAGATCATTGGTGTGAGCACAGAAGATGATGGTGTCTACACCTGCATCGCTGTGAACGACATGGGTTCAGCCTCGTCTTCTGCCAGTCTGAGGGTTCTAGGTCCAGGG
AGTGATGGGATCGTGGTGACCTGGAAGGACAACTTCGACGCCTTCTACAGTGAGGTGGCTGAGCTCGGCAGGGGCAGATTTGCTGTAGTTAAGAAATGTGACCAGAAGGGAACCAAACGAGCAGTGGC
CACAAAGTTTGTGAACAAGAAGTTGATGAAGCGTGACCAGGTCACTCATGAGCTTGGCATCCTGCAGAACCTCCAGCACCCCCTCTTCGTGAGCCTTCTAGACACCTTCGAGACCCCCACCAGTTACG
TCCTGGTTTTGGAATTGGCTGACCAAGGTCGCCTCCTAGACTGTGTGGTACGATGGGGAAGTCTCACCGAAGGGAAGGTCAGAGCGCACCTGGGGGAAGTTCTGGAAGCCGTCCGATACCTTCACAAC
TGCAGGATAGCACACCTGGACCTAAAGCCTGAGAACATCTTGGTGGATCAGAGTTTGGCCAAGCCAACCATTAAACTCACTGACTTTGGAGACGCTGTCCAGCTCAACACCACCTACTACATCCACCA
GTTGCTGGGGAACCCCGAGTTTGCAGCCCCGGAAATCATTCTTGGGAACCCTGTCTCCCTGACCGCGGACACGTGGAGCGTTGGGGTGCTCACGTACGTGCTGCTCAGCGGCGTGTCCCCCTTCTTGG
ATGACAGCGTGGAAGAGACCTGCCTGAACATTTGCCGACTGGACTTCAGCTTCCCAGAGGACTACTTTCAAGGAGTTAGCCAGAAGGCCAAGGAATTCGTGTGCTTCCTCCTGCAGGAGGACCCCGCC
AAGCGTCCCTCGGCTGCACTGGCCCTACAGGAGCAGTGGCTGCAGGCAGGTAACGGCAGCGGCAAAGGCATGGGCGTCCTCGACACGTCCAGACTGACCTCCTTCATTGAGCGGCGCAAACACCAGAA
TGATGTTCGACCTATCCGTAGCATTAAAAACTTCTTACAGAGCAGGCTTCTGCCTAGAGTTTGA

hide sequence

RefSeq Acc Id:

XM_017591212 ⟹ XP_017446701

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	80,247,534 - 80,531,824 (-)	NCBI
mRatBN7.2	2	78,517,118 - 78,801,384 (-)	NCBI
Rnor_6.0	2	80,483,497 - 80,769,312 (-)	NCBI

Sequence:

show sequence

AGAATCCTGGCAGGGGGCGCAGTGCCGGCCTGGAAGGCCAGTGTGGGTCGGTCACACTTGTTCC
TGCTCCTCCCAGGTTTGGAGCAGCCCTGGAGGAGGAGACCTGGCCAGCTCCACGTTTCTGCAGCCACTCCATTCCGCCCTCAGGGCTCCCAGGCGCGGCCCCGCCCCTCCATGATCCCGCCCACAACA
GGCACCGCCCACCAGCCGAGCCCACGCTCCGGCCCCTAACGAAGCTCTCCGGAAATTCCCGAAGCCCCTCTTTTTCCTTCCTCTCCTTTCCCTGCTCTCCCTTTCCTTTCACCCGGACTCCCTCGGCC
GTGATTTCTCCCTCCCCCTCCTTCCTTCCCCATCGGAAAGCAAGATGGAGGCTCGCTGCTGCCGCCGGCGTCCGTGATCGCGGAGCTTCTCCAGCCCCGGCCCCCGCCCTCGCGTGTCCGCGCCGCTG
CCCGCGCCCCGGCCGGCCACACAGAGGCCGTGGCTCCGCGCGCCCGCCCCGCGCCAGGCTCGCGGTTCCCGGGCGGTGTCCTCGTCTATGTGGGCGCGCTCCTCGGGCCGAGCCGCCGCCGCCCGCCG
CCCCGGGGCTGTGCGTCCGCGCGCCGGGCGCGGGCAGCTGGGTGTTCGGCGCCGTCAGGCCAGGCGCGGGCGGCTGGGTGCGCGGAGCTAGGGGCGCGGGGCCTGAGGCGGGCTCGTCCGCCGCCGAA
GCCATGAGCGGCAGCAGCGGCGGTGCCACCGCCCCGGCCGCGTCCTCCGGCCCGGCGGCGGCGGCCAGCGCGGCGGGCTCCGGCTGCGGGGGCGGCGCCGGCGAGGGTGCCGAGGAGGCCGCCAAGGA
CCTGGCCGACATCGCGGCCTTCTTTCGATCCGGGTTTCGAAAAAATGATGAAATGAAAGCTATGGATGTTTTGCCCATCCTGAAGGAAAAAGTCGCCTACCTTTCAGGTGGCAGAGATAAGCGTGGAG
GTCCCATATTAACGTTTCCAGCCCGCAGCAATCATGATAGAATGCGGCAGGAGGACCTCAGGAGGCTCATCTCCTATTTAGCCTGCATTCCCAGCGAGGAAGTCTGCAAGCGAGGGTTCACGGTGATT
GTGGACATGCGCGGCTCCAAGTGGGACTCCATCAAACCACTGTTGAAGATCCTGCAGGAGTCCTTCCCCTGCTGCATCCACATCGCCCTGATAATCAAGCCCGACAACTTCTGGCAGAAACAGAGGAC
GAATTTTGGCAGTTCCAAATTTGAATTTGAGACAAATATGGTCTCTTTAGAAGGCCTTACCAAAGTGGTTGACCCCTCCCAGCTAACCCCTGAGTTTGATGGCTGCCTAGAGTACAACCATGAGGAAT
GGATAGAAATCCGAGTAGCTTTTGAGGACTACATTAGCAATGCAGCCCACATGCTGTCCCGGCTAGAGGAACTTCAGGACGTCCTTGCAAAAAAGGAGTTACCTCAGGACCTAGAGGGGGCTCGGAAC
ATGATTGACGAGCATTCTCAGCTGAAGAAGAAGGTGATCAAGGCTCCCATCGAGGACTTGGACTTAGAGGGGCAGAAGCTGCTTCAGCGGATCCAGAGCAGCGAGAGTTTTCCCAAAAAGAACTCAGG
CTCGGGCAATGCAGACCTGCAGAACCTCTTGCCCAAGGTGTCCACCATGCTTGACAGGCTGCACTCGACTCGGCAGCACCTGCACCAGATGTGGCACGTGAGGAAACTGAAGTTGGACCAGTGCTTCC
AGCTGCGGCTGTTCGAACAGGATGCTGAGAAGATGTTTGACTGGATCACACACAACAAAGGCCTGTTTCTAAACAGCTACACGGAGATCGGGGCCAGCCACCCTCACGCCATGGAGCTTCAGACGCAG
CACAATCACTTTGCTATGAACTGTATGAACGTGTATGTAAATATCAACCGCATAATGTCGGTGGCCAATCGCCTGGTGGAGTCGGGCCACTATGCCTCTCAGCAGATTAAGCAGATCGCCAATCAGCT
GGAACAGGAGTGGAAAGCGTTCGCAGCGGCCTTGGACGAGCGCAGCACCTTGTTGGACATGTCCTCCATCTTTCATCAGAAGGCTGAGAAGTACATGAGCAATGTGGACTCGTGGTGTAAGGCCTGTG
GTGAAGTAGACCTTCCCTCGGAGCTGCAGGACCTGGAAGATGCCATTCATCATCACCAGGGGATCTATGAGCACATCACCCTCGCTTACTCTGAGGTAAGCCAGGATGGGAAGTCTCTCCTTGATAAG
CTCCAGCGCCCCCTGACCCCCGGCAGCTCTGATTCCCTCACGGCCTCTGCCAACTACTCCAAGGCGGTGCACCATGTCTTGGATGTCATCCACGAGGTCCTGCACCACCAGCGCCAGCTCGAGAACAT
CTGGCAGCACCGCAAGGTTCGGCTCCACCAGAGGCTGCAGCTCTGTGTCTTCCAGCAGGACGTTCAGCAGGTGCTGGACTGGATAGAGAACCACGGAGAAGCATTTCTGAGCAAACACACAGGCGTGG
GCAAATCCCTTCACCGGGCCAGAGCTTTGCAGAAACGCCATGAGGACTTCGAGGAAGTTGCACAGAACACGTACACAAATGCAGATAAACTGCTAGAAGCAGCAGAGCAGCTGGCTCAGACTGGGGAA
TGTGACCCCGAAGAGATTTATCAGGCTGCCCATCAGCTTGAAGACCGGATACAAGACTTTGTTCGGCGAGTTGAACAGCGGAAGATCCTGCTGGACATGTCTGTGTCATTTCACACCCATGTAAAAGA
GCTCTGGACATGGCTGGAGGAGCTGCAGAAGGAACTGCTGGACGACGTGTACGCCGAGTCGGTGGAGGCCGTCCAGGATCTCATCAAGAGATTCGGCCAGCAGCAGCAGACCACCCTGCAGGTGACAG
TCAACGTGATCAAGGAAGGGGAGGACCTCATCCAGCAGCTGAGGGACTCTGCCATCTCCAGTAACAAGACGCCGCACAACAGCTCCATCAACCACATCGAGACGGTGCTGCAGCAGCTGGACGAGGCT
CAGTCCCAGATGGAGGAGCTCTTCCAGGAACGCAAGATCAAGCTGGAACTCTTCCTGCAGCTACGCATATTCGAGCGGGATGCCATCGACATCATCTCGGACCTTGAGTCTTGGAATGATGAACTTTC
CCAGCAAATGAACGACTTCGATACAGAGGATCTGACGATCGCTGAGCAGCGCCTGCAGCACCATGCGGACAAAGCCCTAACCATGAATAACTTGACTTTCGACGTCATCCACCAGGGACAGGATCTTC
TGCAGTACGTCAATGAGGTCCAGGCCTCTGGTGTGGAGCTGCTTTGCGACAGAGATGTGGACATGGCCACTCGGGTTCAGGACCTCCTGGAGTTTCTTCACGAAAAGCAGCAGGAGTTGGATTTAGCG
GCCGAGCAGCATCGGAAACACTTGGAGCAGTGTGTGCAGTTGCGCCACCTGCAGGCAGAAGTGAAGCAGGTACTGGGCTGGATCCGGAATGGAGAGTCCATGCTGAATGCTGGGCTCATCACGGCCAG
CTCGCTGCAGGAGGCCGAGCAGCTGCAGAGAGAGCACGAGCAGTTCCAGCACGCTATTGAGAAAACACACCAGAGTGCACTGCAGGTGCAGCAGAAGGCGGAGGCCATGCTGCAGGCCAACCACTACG
ACATGGACATGATCCGTGACTGTGCAGAGAAGGTCGCCTCGCACTGGCAGCAGCTCATGCTCAAGATGGAAGACCGCCTCAAGCTCGTCAACGCCTCCGTCGCCTTCTACAAGACTTCTGAGCAGGTC
TGCAGTGTTCTGGAGAGCCTGGAGCAGGAGTACAAGAGAGAGGAGGACTGGTGTGGTGGAGCCGACAAGCTGGGCCCCAATTCTGAGACTGACCACGTCACCCCAATGATTAGCAAGCACCTCGAACA
GAAGGAAGCCTTCCTGAAGGCTTGCACACTGGCCAGGAGGAACGCAGATGTCTTCCTAAAATACCTACACAGGAACAGCGTGAGCATGCCGGGGATGGTGACACACATCAAAGCTCCAGAACAGCAAG
TAAAAAATATCTTGAACGAACTCTTCCAGCGGGAAAACAGGGTATTGCATTATTGGACCATGAGAAAAAGGCGGCTGGACCAGTGCCAGCAGTACGTGGTCTTTGAGAGGAGTGCCAAGCAGGCATTA
GAATGGATCCACGACAATGGGGAGTTCTATCTTTCCACACATACCTCAACAGGGTCCAGCATTCAGCATACACAGGAGCTGTTGAAAGAACATGAAGAGTTTCAGATAACTGCCAAGCAAACCAAAGA
GAGGGTGAAGCTATTGATACAGCTGGCTGATGGCTTTTGTGAAAAAGGGCATGCCCATGCAGCAGAAATTAAAAAATGTGTGACCGCAGTGGATAAGAGGTACAGAGATTTCTCTCTGCGCATGGAGA
AGTACCGGACCTCTTTGGAGAAAGCCCTGGGGATTTCTTCAGATTCCAACAAATCGAGTAAAAGCCTGCAGTTGGACATCATCCCTGCCAGTATCCCCGGGTCAGAGGTGAAGCTTCGGGATGCTGCT
CACGAACTCAATGAAGAGAAGCGCAAGTCTGCCCGCAGGAAAGAGTTCATAATGGCTGAGTTAATTCAAACCGAAAAGGCTTATGTAAGAGACCTTCGAGAATGTATGGATACCTACCTGTGGGAAAT
GACCAGCGGAGTGGAGGAGATCCCGCCCGGCATCGTCAACAAGGAGCTCATCATCTTCGGGAACATGCAGGAGATCTACGAGTTCCATAACAACATCTTCCTGAAGGAGCTGGAGAAGTACGAGCAGC
TCCCAGAGGACGTGGGGCACTGCTTTGTCACCTGGGCAGACAAGTTTCAGATGTATGTCACATACTGCAAAAATAAACCTGATTCTACGCAGCTGATCCTGGAACACGCAGGGTCCTACTTTGACGAG
ATCCAGCAGCGGCATGGGTTAGCCAATTCCATCTCTTCCTACCTGATCAAACCAGTTCAGCGAATAACAAAGTACCAGCTCCTTTTAAAAGAGCTGCTCACATGCTGTGAAGAAGGAAAGGGGGAGAT
TAAAGATGGCCTCGAGGTGATGCTCAGTGTGCCCAAGCGAGCCAATGATGCCATGCACCTCAGCATGCTGGAAGGGTTTGATGAAAACATTGAGTCTCAGGGAGAGCTCATCCTGCAGGAGTCCTTCC
AAGTGTGGGACCCAAAAACCTTAATTCGGAAGGGTCGAGAACGCCATCTCTTCCTTTTTGAAATGTCCTTAGTGTTCAGTAAAGAAGTGAAAGACTCCAGCGGGAGAAGCAAGTACCTGTACAAAAGC
AAGCTGTTTACCTCAGAGTTGGGTGTCACGGAACATGTTGAAGGAGATCCTTGCAAATTTGCACTGTGGGTGGGGAGGACACCAACTTCAGATAATAAAATTGTCCTTAAGGCCTCCAGTATCGAGAA
CAAACAGGACTGGATAAAGCACATCCGTGAGGTGATACAGGAGAGGACGGTGCACCTGAGAGGAGCCCTGAAGGAGCCCATCCACATCCCCAAGACGGCTCCCGCAGCAAGGCAGAAGGGGAGGAGGG
ATGGAGAGGACCTGGACAGCCAAGGGGACGGCAGCAGCCAGCCCGACACCATTTCCATTGCCTCCCGGACATCACAGAACACACTGGACAGTGACAAGCTTTCTGGCGGCTGCGAGCTGACAGTGGTG
ATCCATGACTTCACAGCTTGCAACAGCAATGAGCTGACCATCCGGCGAGGCCAGACAGTGGAGGTTCTCGAACGGCCTCACGACAAGCCCGACTGGTGTCTGGTGCGCACCACTGATAGGTCCCCTGC
AGCTGAAGGCCTCGTGCCCTGTGGCTCACTGTGCATTGCCCACTCACGAAGTAGCATGGAGATGGAGGGCATCTTCAACCACAAAGACTCACTGTCCGTCTCCAGTAATGACGCCAGCCCACCGGCCT
CTGTGGCCTCCCTTCAACCCCACATGATGGGAGCACAGAGTTCACCAGGTCCCAAGCGGCCGGGCAACACCCTGCGCAAGTGGCTCACAAGCCCCGTACGGCGGCTCAGCAGTGGCAAGGCCGATGGA
CATGCGAAGAAGCTGGCCCACAAGCACAAGAAGAGCAGGGAGGTCCGGAAGAGTGCGGACGCTGGATCACAGAAGGATTCAGATGACAGCGCTGCCACCCCACAGGATGAGACCATCGAAGAGAGAGG
ACGGAACGAGGGCCTCAGCAGTGGTACGCTGTCCAAATCCTCGTCCTCGGGCATGCAGAGCTGCGGAGAAGAAGAAGGAGAGGAGGGCGCCGACGCTGTACCACTGCCTCCGCCCATGGCCATCCAGC
AGCACAGCCTCCTTCAGCCAGACTCGCAGGATGACAAGGCCTCTTCGAGGTTATTAGTCCGCCCCACCAGCTCTGAGACTCCCAGTGCGGCTGAGCTCGTCAGTGCGATTGAAGAACTCGTGAAGAGC
AAAATGGCGCTGGAGGACCGCCCTAGCTCACTGCTTGTTGACCAGGGAGACAGTAGCAGCCCGTCCTTCAATCCCTCAGACAATTCTCTCCTCTCATCCTCCTCGCCCATTGACGAGATGGAAGAAAG
AAAATGCAGCCTCTCTCTAAAGAGAAGACACTATGTTTTGCAAGAATTAGTGGAGACAGAGCGAGACTATGTGCGGGACCTTGGATGTGTGGTTGAGGGCTACATGGCGCTGATGAAGGAAGACGGCG
TTCCTGATGACATGAAGGGGAAAGACAAGATCGTGTTTGGCAACATCCATCAGATTTACGACTGGCACAGAGACTTTTTTTTAGGAGAGTTGGAGAAGTGCCTTGAAGATCCAGAAAAACTAGGATCC
CTTTTTGTAAAACACGAGAGAAGGTTGCACATGTACATAGTTTATTGTCAAAATAAACCAAAGTCTGAGCACATTGTCTCCGAGTACATCGACACCTTTTTTGAGGACTTAAAGCAGCGCCTGGGCCA
CAGACTGCAGCTCACTGATCTGTTGATCAAACCTGTGCAGAGAATCATGAAGTACCAGCTGCTCCTGAAGGACTTCCTCAAGTACTCAAAAAAAGCTAGCCTGGACACGTCCGAATTAGAGAAAGCTG
TAGAGGTCATGTGCATAGTGCCGAAGCGCTGCAACGACATGATGAACGTCGGGCGGCTGCAAGGATTTGACGGTAAAATTGTTGCCCAGGGTAAACTGCTCTTACAGGACACATTCCTGGTCACAGAC
CAAGATGCAGGGCTTCTGCCCCGATGCAAAGAGAGGCGGGTTTTCCTCTTTGAACAGATTGTCATATTCAGCGAACCGCTTGATAAGAAAAAGGGCTTTTCCATGCCAGGATTTCTGTTCAAGAACAG
TATCAAGGTGAGTTGCCTTTGCCTGGAGGAGAATGTGGAGAGCGATCCCTGTAAGTTTGCCCTGACATCCAGGACGGGCGATGCCGTGGAGACCTTCATTTTGCATTCATCCAGTCCAAGTGTCCGAC
AAACGTGGATCCATGAAATCAACCAAATCTTAGAAAACCAGCGCAACTTTTTAAATGCCTTGACATCACCCATCGAGTACCAGAGGAACCATAGCGGGGGCGGCGGCAGTGGCAGCGGGGGCAGCAGC
GGCGGGGGCGGGGGCAGCGGTGGCAGCGGGGCCTCCAGTGGAGGCAGCAGCAGCCATGGCAGTGGCCCCAGCAGCTGCAGCAGTGGCCCCAGCTCGAGCAGGAGCAGGCCCTCCAGGATCCCACAGCC
TGTCAGACACCACCCCCCCATGCTGGTCTCCTCTGCAGCCTCAAGCCAGGCAGAGGCAGACAAGATGTCAGAGTGAAAGCAGCAGCAGTAGCAACATCTCCACCATGCTGGTGACACACGAGTACACG
GCAGTGAAGGAGGATGAGATAAACGTCTAT

hide sequence

RefSeq Acc Id:

XM_039102226 ⟹ XP_038958154

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	80,235,485 - 80,380,061 (-)	NCBI
mRatBN7.2	2	78,505,069 - 78,649,651 (-)	NCBI


Protein RefSeqs	NP_001101128	(Get FASTA)	NCBI Sequence Viewer
	XP_006232152	(Get FASTA)	NCBI Sequence Viewer
	XP_006232153	(Get FASTA)	NCBI Sequence Viewer
	XP_017446701	(Get FASTA)	NCBI Sequence Viewer
	XP_038958154	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL82631	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000076435
	ENSRNOP00000081265
	ENSRNOP00000091530
GenBank Protein	F1M0Z1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_006232152 ⟸ XM_006232090
- Peptide Label:	isoform X1
- UniProtKB:	F1M0Z1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSGSSGGATAPAASSGPAAAASAAGSGCGGGAGEGAEEAAKDLADIAAFFRSGFRKNDEMKAMDVLPILKEKVAYLSGGRDKRGGPILTFPARSNHDRMRQEDLRRLISYLACIPSEEVCKRGFTVIV DMRGSKWDSIKPLLKILQESFPCCIHIALIIKPDNFWQKQRTNFGSSKFEFETNMVSLEGLTKVVDPSQLTPEFDGCLEYNHEEWIEIRVAFEDYISNAAHMLSRLEELQDVLAKKELPQDLEGARNM IDEHSQLKKKVIKAPIEDLDLEGQKLLQRIQSSESFPKKNSGSGNADLQNLLPKVSTMLDRLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWITHNKGLFLNSYTEIGASHPHAMELQTQH NHFAMNCMNVYVNINRIMSVANRLVESGHYASQQIKQIANQLEQEWKAFAAALDERSTLLDMSSIFHQKAEKYMSNVDSWCKACGEVDLPSELQDLEDAIHHHQGIYEHITLAYSEVSQDGKSLLDKL QRPLTPGSSDSLTASANYSKAVHHVLDVIHEVLHHQRQLENIWQHRKVRLHQRLQLCVFQQDVQQVLDWIENHGEAFLSKHTGVGKSLHRARALQKRHEDFEEVAQNTYTNADKLLEAAEQLAQTGEC DPEEIYQAAHQLEDRIQDFVRRVEQRKILLDMSVSFHTHVKELWTWLEELQKELLDDVYAESVEAVQDLIKRFGQQQQTTLQVTVNVIKEGEDLIQQLRDSAISSNKTPHNSSINHIETVLQQLDEAQ SQMEELFQERKIKLELFLQLRIFERDAIDIISDLESWNDELSQQMNDFDTEDLTIAEQRLQHHADKALTMNNLTFDVIHQGQDLLQYVNEVQASGVELLCDRDVDMATRVQDLLEFLHEKQQELDLAA EQHRKHLEQCVQLRHLQAEVKQVLGWIRNGESMLNAGLITASSLQEAEQLQREHEQFQHAIEKTHQSALQVQQKAEAMLQANHYDMDMIRDCAEKVASHWQQLMLKMEDRLKLVNASVAFYKTSEQVC SVLESLEQEYKREEDWCGGADKLGPNSETDHVTPMISKHLEQKEAFLKACTLARRNADVFLKYLHRNSVSMPGMVTHIKAPEQQVKNILNELFQRENRVLHYWTMRKRRLDQCQQYVVFERSAKQALE WIHDNGEFYLSTHTSTGSSIQHTQELLKEHEEFQITAKQTKERVKLLIQLADGFCEKGHAHAAEIKKCVTAVDKRYRDFSLRMEKYRTSLEKALGISSDSNKSSKSLQLDIIPASIPGSEVKLRDAAH ELNEEKRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEI QQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLEGFDENIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSK LFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTVHLRGALKEPIHIPKTAPAARQKGRRDGEDLDSQGDGSSQPDTISIASRTSQNTLDSDKLSGGCELTVVI HDFTACNSNELTIRRGQTVEVLERPHDKPDWCLVRTTDRSPAAEGLVPCGSLCIAHSRSSMEMEGIFNHKDSLSVSSNDASPPASVASLQPHMMGAQSSPGPKRPGNTLRKWLTSPVRRLSSGKADGH AKKLAHKHKKSREVRKSADAGSQKDSDDSAATPQDETIEERGRNEGLSSGTLSKSSSSGMQSCGEEEGEEGADAVPLPPPMAIQQHSLLQPDSQDDKASSRLLVRPTSSETPSAAELVSAIEELVKSK MALEDRPSSLLVDQGDSSSPSFNPSDNSLLSSSSPIDEMEERKCSLSLKRRHYVLQELVETERDYVRDLGCVVEGYMALMKEDGVPDDMKGKDKIVFGNIHQIYDWHRDFFLGELEKCLEDPEKLGSL FVKHERRLHMYIVYCQNKPKSEHIVSEYIDTFFEDLKQRLGHRLQLTDLLIKPVQRIMKYQLLLKDFLKYSKKASLDTSELEKAVEVMCIVPKRCNDMMNVGRLQGFDGKIVAQGKLLLQDTFLVTDQ DAGLLPRCKERRVFLFEQIVIFSEPLDKKKGFSMPGFLFKNSIKVSCLCLEENVESDPCKFALTSRTGDAVETFILHSSSPSVRQTWIHEINQILENQRNFLNALTSPIEYQRNHSGGGGSGSGGSSG GGGGSGGSGASSGGSSSHGSGPSSCSSGPSSSRSRPSRIPQPVRHHPPMLVSSAASSQAEADKMSGMSAPSPSLPTPSNSLALEASLGQPSRLPLSGDSEGHERETEPIPKMKVMESPRKALGSTSGT SQDGNTKDARGNLGPLPLGKTRPGAVSPLNSPLSTTFPSPFGKEAFPPSSPLQKGGSFWSSIPASPASRPSSFTFPGDSDSLQRQTHRHAAPSKDTDRMSTCSSASEQSVQSTQSNGSESSSSSNIST MLVTHEYTAVKEDEINVYQGEVVQILASNQQNMFLVFRAATDQCPAAEGWIPGFVLGHTSAVIMENPDGTFKKSTSWHTALRLRKKSEKKDKDGKRDGKLENGYRKPREGLSNKLLNPNYIYDVPPEF VIPLSEVTCETGETVVFRCRVCGRPKASITWKGPEHNTLNNDDHYNISYSDVGEATLKIIGVSTEDDGVYTCIAVNDMGSASSSASLRVLGPGSDGIVVTWKDNFDAFYSEVAELGRGRFAVVKKCDQ KGTKRAVATKFVNKKLMKRDQVTHELGILQNLQHPLFVSLLDTFETPTSYVLVLELADQGRLLDCVVRWGSLTEGKVRAHLGEVLEAVRYLHNCRIAHLDLKPENILVDQSLAKPTIKLTDFGDAVQL NTTYYIHQLLGNPEFAAPEIILGNPVSLTADTWSVGVLTYVLLSGVSPFLDDSVEETCLNICRLDFSFPEDYFQGVSQKAKEFVCFLLQEDPAKRPSAALALQEQWLQAGNGSGKGMGVLDTSRLTSF IERRKHQNDVRPIRSIKNFLQSRLLPRV hide sequence

RefSeq Acc Id:	XP_006232153 ⟸ XM_006232091
- Peptide Label:	isoform X2
- UniProtKB:	A0A1P0PBZ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQAPRWRAGEGGPGFRKNDEMKAMDVLPILKEKVAYLSGGRDKRGGPILTFPARSNHDRMRQED LRRLISYLACIPSEEVCKRGFTVIVDMRGSKWDSIKPLLKILQESFPCCIHIALIIKPDNFWQKQRTNFGSSKFEFETNMVSLEGLTKVVDPSQLTPEFDGCLEYNHEEWIEIRVAFEDYISNAAHML SRLEELQDVLAKKELPQDLEGARNMIDEHSQLKKKVIKAPIEDLDLEGQKLLQRIQSSESFPKKNSGSGNADLQNLLPKVSTMLDRLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWITHN KGLFLNSYTEIGASHPHAMELQTQHNHFAMNCMNVYVNINRIMSVANRLVESGHYASQQIKQIANQLEQEWKAFAAALDERSTLLDMSSIFHQKAEKYMSNVDSWCKACGEVDLPSELQDLEDAIHHH QGIYEHITLAYSEVSQDGKSLLDKLQRPLTPGSSDSLTASANYSKAVHHVLDVIHEVLHHQRQLENIWQHRKVRLHQRLQLCVFQQDVQQVLDWIENHGEAFLSKHTGVGKSLHRARALQKRHEDFEE VAQNTYTNADKLLEAAEQLAQTGECDPEEIYQAAHQLEDRIQDFVRRVEQRKILLDMSVSFHTHVKELWTWLEELQKELLDDVYAESVEAVQDLIKRFGQQQQTTLQVTVNVIKEGEDLIQQLRDSAI SSNKTPHNSSINHIETVLQQLDEAQSQMEELFQERKIKLELFLQLRIFERDAIDIISDLESWNDELSQQMNDFDTEDLTIAEQRLQHHADKALTMNNLTFDVIHQGQDLLQYVNEVQASGVELLCDRD VDMATRVQDLLEFLHEKQQELDLAAEQHRKHLEQCVQLRHLQAEVKQVLGWIRNGESMLNAGLITASSLQEAEQLQREHEQFQHAIEKTHQSALQVQQKAEAMLQANHYDMDMIRDCAEKVASHWQQL MLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYKREEDWCGGADKLGPNSETDHVTPMISKHLEQKEAFLKACTLARRNADVFLKYLHRNSVSMPGMVTHIKAPEQQVKNILNELFQRENRVLHYW TMRKRRLDQCQQYVVFERSAKQALEWIHDNGEFYLSTHTSTGSSIQHTQELLKEHEEFQITAKQTKERVKLLIQLADGFCEKGHAHAAEIKKCVTAVDKRYRDFSLRMEKYRTSLEKALGISSDSNKS SKSLQLDIIPASIPGSEVKLRDAAHELNEEKRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMY VTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLEGFDENIESQGELILQESFQVWDPKTLIRKGRERHLFL FEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTVHLRGALKEPIHIPKTAPAARQKGRRDGEDLDSQGDGSSQPDTIS IASRTSQNTLDSDKLSGGCELTVVIHDFTACNSNELTIRRGQTVEVLERPHDKPDWCLVRTTDRSPAAEGLVPCGSLCIAHSRSSMEMEGIFNHKDSLSVSSNDASPPASVASLQPHMMGAQSSPGPK RPGNTLRKWLTSPVRRLSSGKADGHAKKLAHKHKKSREVRKSADAGSQKDSDDSAATPQDETIEERGRNEGLSSGTLSKSSSSGMQSCGEEEGEEGADAVPLPPPMAIQQHSLLQPDSQDDKASSRLL VRPTSSETPSAAELVSAIEELVKSKMALEDRPSSLLVDQGDSSSPSFNPSDNSLLSSSSPIDEMEERKCSLSLKRRHYVLQELVETERDYVRDLGCVVEGYMALMKEDGVPDDMKGKDKIVFGNIHQI YDWHRDFFLGELEKCLEDPEKLGSLFVKHERRLHMYIVYCQNKPKSEHIVSEYIDTFFEDLKQRLGHRLQLTDLLIKPVQRIMKYQLLLKDFLKYSKKASLDTSELEKAVEVMCIVPKRCNDMMNVGR LQGFDGKIVAQGKLLLQDTFLVTDQDAGLLPRCKERRVFLFEQIVIFSEPLDKKKGFSMPGFLFKNSIKVSCLCLEENVESDPCKFALTSRTGDAVETFILHSSSPSVRQTWIHEINQILENQRNFLN ALTSPIEYQRNHSGGGGSGSGGSSGGGGGSGGSGASSGGSSSHGSGPSSCSSGPSSSRSRPSRIPQPVRHHPPMLVSSAASSQAEADKMSGMSAPSPSLPTPSNSLALEASLGQPSRLPLSGDSEGHE RETEPIPKMKVMESPRKALGSTSGTSQDGNTKDARGNLGPLPLGKTRPGAVSPLNSPLSTTFPSPFGKEAFPPSSPLQKGGSFWSSIPASPASRPSSFTFPGDSDSLQRQTHRHAAPSKDTDRMSTCS SASEQSVQSTQSNGSESSSSSNISTMLVTHEYTAVKEDEINVYQGEVVQILASNQQNMFLVFRAATDQCPAAEGWIPGFVLGHTSAVIMENPDGTFKKSTSWHTALRLRKKSEKKDKDGKRDGKLENG YRKPREGLSNKVSVKLLNPNYIYDVPPEFVIPLSEVTCETGETVVFRCRVCGRPKASITWKGPEHNTLNNDDHYNISYSDVGEATLKIIGVSTEDDGVYTCIAVNDMGSASSSASLRVLGPGSDGIVV TWKDNFDAFYSEVAELGRGRFAVVKKCDQKGTKRAVATKFVNKKLMKRDQVTHELGILQNLQHPLFVSLLDTFETPTSYVLVLELADQGRLLDCVVRWGSLTEGKVRAHLGEVLEAVRYLHNCRIAHL DLKPENILVDQSLAKPTIKLTDFGDAVQLNTTYYIHQLLGNPEFAAPEIILGNPVSLTADTWSVGVLTYVLLSGVSPFLDDSVEETCLNICRLDFSFPEDYFQGVSQKAKEFVCFLLQEDPAKRPSAA LALQEQWLQAGNGSGKGMGVLDTSRLTSFIERRKHQNDVRPIRSIKNFLQSRLLPRV hide sequence

RefSeq Acc Id:

XP_017446701 ⟸ XM_017591212

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSGSSGGATAPAASSGPAAAASAAGSGCGGGAGEGAEEAAKDLADIAAFFRSGFRKNDEMKAMD
VLPILKEKVAYLSGGRDKRGGPILTFPARSNHDRMRQEDLRRLISYLACIPSEEVCKRGFTVIVDMRGSKWDSIKPLLKILQESFPCCIHIALIIKPDNFWQKQRTNFGSSKFEFETNMVSLEGLTKV
VDPSQLTPEFDGCLEYNHEEWIEIRVAFEDYISNAAHMLSRLEELQDVLAKKELPQDLEGARNMIDEHSQLKKKVIKAPIEDLDLEGQKLLQRIQSSESFPKKNSGSGNADLQNLLPKVSTMLDRLHS
TRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWITHNKGLFLNSYTEIGASHPHAMELQTQHNHFAMNCMNVYVNINRIMSVANRLVESGHYASQQIKQIANQLEQEWKAFAAALDERSTLLDMSS
IFHQKAEKYMSNVDSWCKACGEVDLPSELQDLEDAIHHHQGIYEHITLAYSEVSQDGKSLLDKLQRPLTPGSSDSLTASANYSKAVHHVLDVIHEVLHHQRQLENIWQHRKVRLHQRLQLCVFQQDVQ
QVLDWIENHGEAFLSKHTGVGKSLHRARALQKRHEDFEEVAQNTYTNADKLLEAAEQLAQTGECDPEEIYQAAHQLEDRIQDFVRRVEQRKILLDMSVSFHTHVKELWTWLEELQKELLDDVYAESVE
AVQDLIKRFGQQQQTTLQVTVNVIKEGEDLIQQLRDSAISSNKTPHNSSINHIETVLQQLDEAQSQMEELFQERKIKLELFLQLRIFERDAIDIISDLESWNDELSQQMNDFDTEDLTIAEQRLQHHA
DKALTMNNLTFDVIHQGQDLLQYVNEVQASGVELLCDRDVDMATRVQDLLEFLHEKQQELDLAAEQHRKHLEQCVQLRHLQAEVKQVLGWIRNGESMLNAGLITASSLQEAEQLQREHEQFQHAIEKT
HQSALQVQQKAEAMLQANHYDMDMIRDCAEKVASHWQQLMLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYKREEDWCGGADKLGPNSETDHVTPMISKHLEQKEAFLKACTLARRNADVFLKYL
HRNSVSMPGMVTHIKAPEQQVKNILNELFQRENRVLHYWTMRKRRLDQCQQYVVFERSAKQALEWIHDNGEFYLSTHTSTGSSIQHTQELLKEHEEFQITAKQTKERVKLLIQLADGFCEKGHAHAAE
IKKCVTAVDKRYRDFSLRMEKYRTSLEKALGISSDSNKSSKSLQLDIIPASIPGSEVKLRDAAHELNEEKRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNM
QEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSM
LEGFDENIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTVHLRGA
LKEPIHIPKTAPAARQKGRRDGEDLDSQGDGSSQPDTISIASRTSQNTLDSDKLSGGCELTVVIHDFTACNSNELTIRRGQTVEVLERPHDKPDWCLVRTTDRSPAAEGLVPCGSLCIAHSRSSMEME
GIFNHKDSLSVSSNDASPPASVASLQPHMMGAQSSPGPKRPGNTLRKWLTSPVRRLSSGKADGHAKKLAHKHKKSREVRKSADAGSQKDSDDSAATPQDETIEERGRNEGLSSGTLSKSSSSGMQSCG
EEEGEEGADAVPLPPPMAIQQHSLLQPDSQDDKASSRLLVRPTSSETPSAAELVSAIEELVKSKMALEDRPSSLLVDQGDSSSPSFNPSDNSLLSSSSPIDEMEERKCSLSLKRRHYVLQELVETERD
YVRDLGCVVEGYMALMKEDGVPDDMKGKDKIVFGNIHQIYDWHRDFFLGELEKCLEDPEKLGSLFVKHERRLHMYIVYCQNKPKSEHIVSEYIDTFFEDLKQRLGHRLQLTDLLIKPVQRIMKYQLLL
KDFLKYSKKASLDTSELEKAVEVMCIVPKRCNDMMNVGRLQGFDGKIVAQGKLLLQDTFLVTDQDAGLLPRCKERRVFLFEQIVIFSEPLDKKKGFSMPGFLFKNSIKVSCLCLEENVESDPCKFALT
SRTGDAVETFILHSSSPSVRQTWIHEINQILENQRNFLNALTSPIEYQRNHSGGGGSGSGGSSGGGGGSGGSGASSGGSSSHGSGPSSCSSGPSSSRSRPSRIPQPVRHHPPMLVSSAASSQAEADKM
SE

hide sequence

Ensembl Acc Id:

ENSRNOP00000016784 ⟸ ENSRNOT00000016784

RefSeq Acc Id:	NP_001101128 ⟸ NM_001107658
- UniProtKB:	F1M0Z1 (UniProtKB/Swiss-Prot), A0A8I6AS57 (UniProtKB/TrEMBL)

Protein Domains

CRAL-TRIO DH Ig-like Ig-like C2-type PH Protein kinase SH3

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-53911	BioCyc
Ensembl Genes	ENSRNOG00000012148	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000093833	ENTREZGENE
	ENSRNOT00000099604	ENTREZGENE
	ENSRNOT00000107418	ENTREZGENE
Gene3D-CATH	1.20.58.60	UniProtKB/Swiss-Prot
	1.20.900.10	UniProtKB/Swiss-Prot
	2.30.29.30	UniProtKB/Swiss-Prot
	2.60.40.10	UniProtKB/Swiss-Prot
	3.40.525.10	UniProtKB/Swiss-Prot
	Phosphorylase Kinase, domain 1	UniProtKB/Swiss-Prot
	SH3 Domains	UniProtKB/Swiss-Prot
	Transferase(Phosphotransferase) domain 1	UniProtKB/Swiss-Prot
InterPro	CRAL-TRIO_dom	UniProtKB/Swiss-Prot
	CRAL-TRIO_dom_sf	UniProtKB/Swiss-Prot
	DBL_dom_sf	UniProtKB/Swiss-Prot
	DH-domain	UniProtKB/Swiss-Prot
	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_I-set	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_sub2	UniProtKB/Swiss-Prot
	Kalirin_TRIO_PH_1	UniProtKB/Swiss-Prot
	Kalirin_TRIO_SH3_2	UniProtKB/Swiss-Prot
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot
	PH-like_dom_sf	UniProtKB/Swiss-Prot
	PH_domain	UniProtKB/Swiss-Prot
	Prot_kinase_dom	UniProtKB/Swiss-Prot
	RhoGEF_Guanine_NuclExch_SF	UniProtKB/Swiss-Prot
	Ser/Thr_kinase_AS	UniProtKB/Swiss-Prot
	SH3-like_dom_sf	UniProtKB/Swiss-Prot
	SH3_domain	UniProtKB/Swiss-Prot
	SOS1_NGEF_PH	UniProtKB/Swiss-Prot
	Spectrin/alpha-actinin	UniProtKB/Swiss-Prot
	Spectrin_repeat	UniProtKB/Swiss-Prot
	TRIO	UniProtKB/Swiss-Prot
NCBI Gene	310192	ENTREZGENE
PANTHER	RHO GUANINE EXCHANGE FACTOR-RELATED	UniProtKB/Swiss-Prot
	TRIO, ISOFORM A	UniProtKB/Swiss-Prot
Pfam	CRAL_TRIO_2	UniProtKB/Swiss-Prot
	I-set	UniProtKB/Swiss-Prot
	Pkinase	UniProtKB/Swiss-Prot
	RhoGEF	UniProtKB/Swiss-Prot
	SH3-RhoG_link	UniProtKB/Swiss-Prot
	SH3_1	UniProtKB/Swiss-Prot
	SOS1_NGEF_PH	UniProtKB/Swiss-Prot
	Spectrin	UniProtKB/Swiss-Prot
PhenoGen	Trio	PhenoGen
PROSITE	CRAL_TRIO	UniProtKB/Swiss-Prot
	DH_2	UniProtKB/Swiss-Prot
	IG_LIKE	UniProtKB/Swiss-Prot
	PH_DOMAIN	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_ST	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000012148	RatGTEx
SMART	IGc2	UniProtKB/Swiss-Prot
	RhoGEF	UniProtKB/Swiss-Prot
	S_TKc	UniProtKB/Swiss-Prot
	SEC14	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
	SM00233	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
	SPEC	UniProtKB/Swiss-Prot
Superfamily-SCOP	PH domain-like	UniProtKB/Swiss-Prot
	Spectrin repeat	UniProtKB/Swiss-Prot
	SSF48065	UniProtKB/Swiss-Prot
	SSF48726	UniProtKB/Swiss-Prot
	SSF50044	UniProtKB/Swiss-Prot
	SSF52087	UniProtKB/Swiss-Prot
	SSF56112	UniProtKB/Swiss-Prot
UniProt	A0A1P0PBZ6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5XUX3_RAT	UniProtKB/TrEMBL
	A0A8I5ZS58_RAT	UniProtKB/TrEMBL
	A0A8I6AS57	ENTREZGENE, UniProtKB/TrEMBL
	A6JMY2_RAT	UniProtKB/TrEMBL
	F1M0Z1	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-02	Trio	trio Rho guanine nucleotide exchange factor	Trio	triple functional domain (PTPRF interacting)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Trio	triple functional domain (PTPRF interacting)	Trio_predicted	triple functional domain (PTPRF interacting) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Trio_predicted	triple functional domain (PTPRF interacting) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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