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Gene: Dpy19l3 (dpy-19 like C-mannosyltransferase 3) Rattus norvegicus

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Symbol:

Dpy19l3

Name:

dpy-19 like C-mannosyltransferase 3

RGD ID:

1308334

Description:

Predicted to enable mannosyltransferase activity. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DPY19L3 (dpy-19 like C-mannosyltransferase 3); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

dpy-19-like 3; dpy-19-like 3 (C. elegans); LOC308519; probable C-mannosyltransferase DPY19L3; protein dpy-19 homolog 3; RGD1308334; similar to hypothetical protein FLJ32949

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DPY19L3 (dpy-19 like C-mannosyltransferase 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Dpy19l3 (dpy-19 like C-mannosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dpy19l3 (dpy-19 like C-mannosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DPY19L3 (dpy-19 like C-mannosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DPY19L3 (dpy-19 like C-mannosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dpy19l3 (dpy-19 like C-mannosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DPY19L3 (dpy-19 like C-mannosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DPY19L3 (dpy-19 like C-mannosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dpy19l3 (dpy-19 like C-mannosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Dpy19l3 (dpy-19 like C-mannosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	DPY19L3 (dpy-19 like C-mannosyltransferase 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Dpy19l3 (dpy-19 like C-mannosyltransferase 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dpy19l3 (dpy-19 like C-mannosyltransferase 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6659	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6659	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dpy19l3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dpy19l3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	97,487,206 - 97,554,232 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	97,487,206 - 97,554,232 (-)	Ensembl				GRCr8
mRatBN7.2	1	88,350,303 - 88,417,339 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	88,350,303 - 88,417,339 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	93,755,161 - 93,821,989 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	102,221,124 - 102,287,965 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	95,513,448 - 95,580,285 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	92,002,927 - 92,069,855 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	92,002,927 - 92,069,160 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	93,134,892 - 93,199,944 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	88,244,980 - 88,311,604 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	82,699,204 - 82,766,607 (-)	NCBI		Celera
RGSC_v3.1	1	88,323,525 - 88,388,025 (-)	NCBI
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

ethanol (ISO)

flutamide (EXP)

formaldehyde (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

glyphosate (EXP)

GSK-J4 (ISO)

hydralazine (ISO)

maneb (ISO)

methapyrilene (ISO)

N-nitrosodiethylamine (ISO)

nickel sulfate (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

endoplasmic reticulum membrane (IBA,IEA,ISO)

membrane (IEA)

Molecular Function

glycosyltransferase activity (IEA)

mannosyltransferase activity (IBA,IEA,ISO)

protein binding (ISO)

transferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Dpy19l3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	97,487,206 - 97,554,232 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	97,487,206 - 97,554,232 (-)	Ensembl				GRCr8
mRatBN7.2	1	88,350,303 - 88,417,339 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	88,350,303 - 88,417,339 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	93,755,161 - 93,821,989 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	102,221,124 - 102,287,965 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	95,513,448 - 95,580,285 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	92,002,927 - 92,069,855 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	92,002,927 - 92,069,160 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	93,134,892 - 93,199,944 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	88,244,980 - 88,311,604 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	82,699,204 - 82,766,607 (-)	NCBI		Celera
RGSC_v3.1	1	88,323,525 - 88,388,025 (-)	NCBI
Cytogenetic Map	1	q21	NCBI

DPY19L3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	32,405,770 - 32,485,890 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	32,405,543 - 32,485,895 (+)	Ensembl			hg38	GRCh38
GRCh37	19	32,896,676 - 32,976,796 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	37,588,871 - 37,667,076 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	29,590,304 - 29,670,441 (+)	NCBI		Celera
Cytogenetic Map	19	q13.11	NCBI
HuRef	19	29,399,707 - 29,479,881 (+)	NCBI		HuRef
CHM1_1	19	32,897,720 - 32,977,978 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	34,924,425 - 35,004,566 (+)	NCBI		T2T-CHM13v2.0

Dpy19l3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	35,384,925 - 35,453,879 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	35,384,590 - 35,453,879 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	35,685,500 - 35,754,460 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	35,685,165 - 35,754,454 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	36,470,519 - 36,539,473 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	35,397,594 - 35,463,158 (-)	NCBI		MGSCv36	mm8
Celera	7	30,809,746 - 30,878,603 (-)	NCBI		Celera
Cytogenetic Map	7	B2	NCBI
cM Map	7	21.37	NCBI

Dpy19l3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	5,466,061 - 5,543,644 (-)	Ensembl
ChiLan1.0	NW_004955468	5,466,094 - 5,544,956 (-)	NCBI	ChiLan1.0	ChiLan1.0

DPY19L3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	38,379,061 - 38,459,122 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	40,375,784 - 40,455,890 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	29,326,368 - 29,406,365 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	38,077,718 - 38,154,683 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	38,077,718 - 38,154,683 (+)	Ensembl			panPan2	panpan1.1

DPY19L3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	119,458,008 - 119,526,738 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	119,457,952 - 119,527,420 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	118,857,349 - 118,927,060 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	120,058,859 - 120,128,574 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	120,058,806 - 120,128,613 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	119,621,693 - 119,691,291 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	119,241,487 - 119,310,977 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	120,301,666 - 120,371,419 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dpy19l3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	8,364,811 - 8,446,369 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	3,199,437 - 3,280,266 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	3,199,513 - 3,281,519 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DPY19L3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	42,334,736 - 42,414,830 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	42,335,462 - 42,414,834 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	37,865,628 - 37,924,103 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DPY19L3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	27,455,468 - 27,536,337 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	27,456,490 - 27,536,338 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	5,027,548 - 5,107,651 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dpy19l3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	7,328,899 - 7,402,617 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	7,326,953 - 7,402,290 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dpy19l3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	162,892,113 - 162,953,092 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dpy19l3
351 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	276
Count of miRNA genes:	187
Interacting mature miRNAs:	212
Transcripts:	ENSRNOT00000039115
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	92963855	109494029	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	91302413	136302413	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	92683681	137683681	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	92683681	137683681	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat

Markers in Region

RH127533

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	88,411,227 - 88,411,445 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	92,063,049 - 92,063,266	NCBI	Rnor6.0
Rnor_5.0	1	93,193,833 - 93,194,050	UniSTS	Rnor5.0
RGSC_v3.4	1	88,305,493 - 88,305,710	UniSTS	RGSC3.4
Celera	1	82,760,496 - 82,760,713	UniSTS
RH 3.4 Map	1	882.0	UniSTS
Cytogenetic Map	1	q21	UniSTS

RH133560

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	88,353,177 - 88,353,392 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	92,005,802 - 92,006,016	NCBI	Rnor6.0
Rnor_5.0	1	93,137,767 - 93,137,981	UniSTS	Rnor5.0
RGSC_v3.4	1	88,243,062 - 88,243,276	UniSTS	RGSC3.4
Celera	1	82,702,079 - 82,702,293	UniSTS
RH 3.4 Map	1	873.4	UniSTS
Cytogenetic Map	1	q21	UniSTS

BF394744

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	88,372,882 - 88,372,986 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	92,025,506 - 92,025,609	NCBI	Rnor6.0
Rnor_5.0	1	93,157,471 - 93,157,574	UniSTS	Rnor5.0
RGSC_v3.4	1	88,262,766 - 88,262,869	UniSTS	RGSC3.4
Celera	1	82,721,773 - 82,721,876	UniSTS
RH 3.4 Map	1	873.4	UniSTS
Cytogenetic Map	1	q21	UniSTS

BE113438

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	88,353,595 - 88,353,746 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	92,006,220 - 92,006,370	NCBI	Rnor6.0
Rnor_5.0	1	93,138,185 - 93,138,335	UniSTS	Rnor5.0
RGSC_v3.4	1	88,243,480 - 88,243,630	UniSTS	RGSC3.4
Celera	1	82,702,497 - 82,702,647	UniSTS
RH 3.4 Map	1	873.4	UniSTS
Cytogenetic Map	1	q21	UniSTS

RH138925

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	88,350,331 - 88,350,528 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	92,002,956 - 92,003,152	NCBI	Rnor6.0
Rnor_5.0	1	93,134,921 - 93,135,117	UniSTS	Rnor5.0
RGSC_v3.4	1	88,240,216 - 88,240,412	UniSTS	RGSC3.4
Celera	1	82,699,233 - 82,699,429	UniSTS
RH 3.4 Map	1	873.4	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000039115 ⟹ ENSRNOP00000033949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,487,206 - 97,554,232 (-)	Ensembl
mRatBN7.2 Ensembl	1	88,350,303 - 88,417,339 (-)	Ensembl
Rnor_6.0 Ensembl	1	92,002,927 - 92,069,160 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127955 ⟹ ENSRNOP00000102814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,494,230 - 97,554,232 (-)	Ensembl

RefSeq Acc Id:

NM_001135835 ⟹ NP_001129307

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,487,206 - 97,554,232 (-)	NCBI
mRatBN7.2	1	88,350,303 - 88,417,339 (-)	NCBI
Rnor_6.0	1	92,002,927 - 92,069,160 (-)	NCBI
Rnor_5.0	1	93,134,892 - 93,199,944 (-)	NCBI
RGSC_v3.4	1	88,244,980 - 88,311,604 (-)	RGD
Celera	1	82,699,204 - 82,766,607 (-)	NCBI

Sequence:

show sequence

GCGCCCCTTCCCGGGGCTGCAGACGCCCCCCAGGCCCATCCTTGCACCGCACCGCACATTGCCG
GCGACAGCTGGGTCCTCCGGGTCTTCAACTCGCTGTAGCCCGTAAAGTGGGCGCGTCCCCAAGG
CCTGGGTGCTTTGCGTGCTTCCTTGCCAATCCCGGGTAGCCCGCGAGGACTGCTGAGGCCGCAG
GGGTGGTTGGAAGAACAATGCCTATGAGTCTTTGACATGATGATGTACATCCGGCAAAGAAAAG
AGACAAAACCCGTTGAAGTTTCTGAGGATTTTCCGTCACCAAAAGAAGATGTGAAGTTGGAAAA
GAAATTGCCATCTGGTTGTGCCTCTGGAAGGTTCTGGAAGATCCTGTCATCTGCAGTTGGCGGA
ACCGTGGCCCTTTGCATTGGACTTCTAACATCCGTGTACCTGGCCACCCTACATGAGAACGATT
TGTGGTTTTCCAATATAAAGGAAGTAGAGCGAGAAATCTCATTCAGGACAGAATGTGGACTGTA
CTATTCTTACTACAAGCAGATGCTGCAGGCTCCGACCCTCCTGCAAGGTTTCCATGGCTTAATC
TATGACAATAAAACCGAATCCATGAGGACGATCAACCTCCTTCAAAGAATGAATATTTACCAAG
AAGTTTTCCTCAGTGTTTTATACAGAGTTCTCCCCATACAGAAATATCTAGAGCCTGTTTATTT
TTATATCTACACTCTTTTTGGGCTCCAAGCAGTCTATGTCACGGCCCTTTATATAACCAGCTGG
CTCCTTAGTGGCACCTGGCTGTCAGGCCTGCTGGCAGCTCTCTGGTACGTCACCAACAGAATCG
ACACGACCAGAGTTGAGTTCACCATCCCGCTGAGGGAGAACTGGGCTCTGCCTTTTTTTGCAAT
TCAGATTGCAGCAATTACCTACTTCCTGAGACCAAACTTGCAGCCTCTTTCTGAAAGGCTGACC
CTTCTTGCCATCTTCGTATCAACTTTTCTCTTTAGCCTGACATGGCAATTTAATCAGTTCATGA
TGCTGCTGCAGGCGCTGGTGCTGTTCATCCTGGACTCCTTGGACATGCTGCCAGCCGTGAAGGC
CACCTGGCTGTACGGCATCCAGATAAGCTGCCTGCTCCTCGTCTGCATGCTTCAGTTTTTTAAC
TCCATGATCCTCGGATCGCTGCTCATCAGTTTTAACCTCTCAGTATTAATTGTAAGAAAACTTC
AGAAGAACCTGAAGACTGGAACCTTCCTGATTAGGATTTGGAAACTATTGTTGCATTTGCTTCT
AGTTTTCTGCTTGACACTTTTTCTCAACAACATTATTAAGAAAATTCTTAACCTGAAGTCAGAT
GAACACATCTTTAAATTTCTGAAGGCCAAGTTTGGGTTTGGAGCAACAAGGGATTTCGATGCAA
ATCTCTATCTGTGTGAAGAAGCCTTTGGCCTCCTGCCTCTCAACACATTCCAAAGGCTCTCAGA
GACACTGCTTTTTTACGCGTACATGTTCGTCCTATTGGTCACAGTGGTCACAGCGTCCGTTGTG
GCCTTTCATAATCTCAGTGACTCCACAAGTCTGCAGCCTGTGGATCAGACAAGAAAGCGTGTGG
TTGACCTGAAGCCAGAAGCCGCATACAACCTGATCCACACCATTCTGTTTGGTGTCTTGGCGTT
GAGTACGATGAGGATGAAGTACCTATGGACCTCCCACATGTGTGTGTTTGCGTCCTTCGGCCTG
TGCAGCTCTGAGATCTGGGAACTGATTCTGAGGCTGGTTCATCTCTGCAACCCGAAGAGGATCT
GGGTCATGCGGTACTCGGTGCCCGTTCTCACCCTGCTGTGCCTGTGCTGTAAGTCCTGGCCAGG
AATGATGGATGAACTCTCCGAGTTGAAAGAATTCTATGACCCAGATACAGTGGAACTGATGAAC
TGGATTAACTCCAATACACCGAGGAAGGCCGTGTTCGCTGGAAGCATGCAGTTGCTGGCTGGAG
TCAAGCTGTGTACAGGACGGACGCTGACCAACCACCCACACTACGAAGATAAAAGTCTGAGAGA
GCGGACCCAGGCGGTTTATCAGATATATGCGAAGAGGTCCCCAGAGGAAGTGCACGCGCTCCTG
CGGTCCTTTGGCACCGACTTTGTGATCCTGGAAGACAGCATCTGCTATGAGCGCAGGCACCACA
GGGGCTGCCGGCTGCGTGATTTGCTGGACGTCGCCAATGGACATGAGATGGATGGGCCAGGAGA
GAGTGACCCTGACTTGAGACCTGCAGACCACCCTCGCTTCTGTGAAGAGATTAAAAGGAACCTG
CCGTCCTACGCAGCCCACTTCACTAGAGTGTTCCAGAACAAGACATTCCATGTCTACAAACTGT
CCAGAAACAAATAACCGTGTCCGTTCTTAAACCACAGTGCATCGACAGCTGGTGGAGCCCGTGT
CTGTGAGTCAGGAGCAAGACTTGAATGCTGGGGTTGCAGACAGCCTGCAGACAAGTCTTGCCAC
CATCGGATACGCCTTCCGCTAGCATCAGCCTTCTCCGCCGTCCTGTCTCTGTCTTTTCTCTGAG
TGTTCTTAGCCTCACGAGTGTACCTGGCCGAGGCTGGCCAGGGATGCTGTTCCTGAGGGAGTGA
TGTGTGACTCACTGGGTGGCCTGGGAATGAAATGCTGGTGGTTGCCAGTAACCCTGAGCCCGCT
GTGAGCGAGTGGACCAGCTGCACACTTCAGTCACCGACCCTTCACCACTGAGACCGCTTGGTGG
CTTTTTAACAGTTGATTGTCCTGTCTCGTTAAAATTTTACACCATTTCCGGTTTACCATGCTTT
CACATGTGTGAAGAAACAGATTATTTTAGATCTTTGAATCTTAAATATTCCACTTGTGCTCTGA
AATGTCACATGTTCAGTCGCGTGTGACACATTTAGAGTGTGTGCTTGTTTTAATTCTGGGCACA
GCAATCAGGGTGCTACCAGGCCAGGCATGGTGACACACTCCTCCTTTAATCCCAGCACTTGCAG
GCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGCAAAT
CTCCTGAGAGTTTGAGGCCAGCCTATTCTGTATAGTGAGTTCTGGGCCAGCCATGGCTATGTGA
CAAGACATAGCCTCATCTTAAGAAAGCAAAGTGTGTCCAGGCTTACGCTAGAAGTCTTTGAGGG
GAATCCATCCATTTTTAATCTCTCTCGCAAGTAAGGTAGTTCTGCTTCACTTCTTACTCATTTC
AGTTAACCGGGTTTGCAAAGCCTGGTAAACTCTTTGTGTTTTAGCCTTTGTAGTTTTTCTAGCC
TACAAACTTGCAAAGTCTGAGGCGTTTTAGATGCTGTGCCTTGACTCCTAGAGTTCATGTGGCA
CTTCATTCTCTCTGACTTCTGGCCGCTAGTCTTCCTTCTTGCCCCGGAGACATCGCACTCCTCC
TCCTCATGGGGTGACCAAGAGCCTCCAAGCCACACGGGATTTAAGCAGCAGAGAGGGGTGGTGA
AAGCTGAGAGCTTTTGACGATTGCTTTTATAATTCACTTCTGATGGTGGGGGCATGTAAAAGCT
GATGAGGCAGGCACATTGTCCACTTAATTAAATCAAGATAGCTAATGAAATTAACTTTCCCTCC
CACTCCTGCCATTTGGAAGTGATTTAAATGTTTCTCCTCACAAGTTAGTGTGATAAATCCCCCT
CGGGCATCGGCAGAGAGCATCGCAGAGAGCCTCGCGTGCTCCGATGGTCACCCTTTGGTTGCTG
CTTGCTGCTTGCGTTCAAAAATGTGTTCCATTGTCTCATCAGGTGTGGAGTTTTTATGTAAAAC
TCACTTAAATAAGACATCAGCAGCCAGGTTGTTAAATTAAGCCATTGGAACTTTGGAATCCTGC
CATCTCTGGACCTCTTAATGAGGTTGGAGACCACTGCAGTTTGGGCTAACACAAGGAAACGTGT
TGGCCAATGCTAAAAGTTTAATGAAGCTGCCGTGCCTGCCGCCGCCTCGGGCACTGATGGAACA
CTCCCGGCCAGTGCCTTACCCTTAAGGAAGAGCAAGCACAGGTAAGGCATACGGCAGCGGGACC
TGGCGACAGTCACTCGTGGGTGAGTTTGCATTCGTGTTAAACATTCCTGTGTGCGTTTGTCTAA
CCGCTTGGCGTTTGGTGTCCTGTGATCCAAGAGCCGTGGACTTAAACTTGGATGCTCGTCCCTA
CCGTGGTAACATTCATGCTAGTCAGCGCTCTGTCTCCACAGCACCATTGCTGCCAACCACAGTG
AGAAGTGCCAACAACCAGTCTTCCCGCAGGCACTCTCCCCGTGACACTGTGACATGTACAGGAC
AATGTTAGAACAAAATGTTTCTTTAAGAATAAATTATATATTTTAAAAAATAGTTAAAATATTT
GATTAAAGTAATTAGACTTTATCCATCTTATAAAACACTGCCTCAGTATCCCCGATAAGTCTGC
TTACTGCCTGTAGCAACCTGGCCACAAAAATCTTGAACCAACTCATCTTGGACCCTGCCTAATT
TAAGATAAATCCTCAGTCTGCCTCTGTGTAGCTTGTCCCAGGCTTTCTTAGCTGCAACATTAAC
TTGTTCATAAACAGCCGGGTCAAAAACAGCCGGGTCAAAATTTAGCTGTTGAGGTCTCACATAC
TGTCCCTCTCCTGCTAGCATCTGAAACACAATAGGTATCTGTTGTGGTTGATTGATCTCTGCAG
TGTTTTGACACTGCTCAGCAAATTCTGATTTCCATAATAAAAAATCTCCTCCAGACAAGCACGC
CCTTGCCAGTTGTTTTCAGTCCCCAGGAGGGAGGGCCTCCGCGGACCAGACTCTCATAGCCTGA
GTAAATGGGGGCTGTCGGTTGGCCACACTGTGCACAAGCAGATTTTAATCCCTTTAACTGTTTA
AATGCAAGAGGTGGATAAACTCTGACTCTTGCCTTGAGGACTGACCTGTTCTATAACTGGAAAT
GCAAAGTGAAATCCCTGAACATCCTCTCCTCTCAGCAGCCTCTTTCAGGGTCACTGTAAGGGAG
ATAAAAGGCTCTGCAGGGAAGGCCGGCTCCCACATGGCTTCCTGACCGCTGCTGCAACTGGCAG
CTCTGCCTCTGTGTCTGAGGGGGTCCAGTCCAGCTCGGGGTTTTACAGGCTCTCAGCTGAGGAA
CCCACTCTGAGGATCCCAGGATCTCCCCTTGAGCCTGTGAGCTTGTAGTGTTTGCACAGACAGC
AAAGTAGAAGCATGTCGCCGCTGCTGGATTTTCTCTGTAACTAACTTGTCCTTGAAAGGAATTT
TGAGTTCTGCCAAGACAACAAGTGGCAAAGAATTCTCCTCCCTATAATACCTAGCGCGGCTTCC
TCTTCCAGATGCTCAGTCTCCCACATCTAGGGTCTCCTCCCTCTCCCCCAGGGGAAGCTCAAAC
ACTGCTTCCATACACAAAGGCTCAGCTGCAAAAGCAGGCACCTTGGCTTCATTCTCCTCTTCCT
CCTTTGTCAGAGCATCCCCAGATGGGTGCTGCGTCCCTGTAACCCACTTCTCCCTCATGTTTAG
AATCTAAACTATCTCCGTTAGTAATCGAGATCCAGAGACTAAAGATATCAACAGGCATTTTACT
TGGTCCATGCACATCATAATAGATTTGAAGTCTTTTCCCAACCTTTTCTTTCCCACATTGTTAA
ATGTAGTAGTACCTAATTAAAATCTTAAATTGATCCCCAGTGGTGACTCATCCTCGATACCTGA
CCCAGTGCTCTGGGTTTCCAAAGGAAAGACACACACACACACACACACACACACACACACACAC
ACACACACACACACACATACACACACACACACACACACAGAGCCTTTATGTTTTGATAAGCCTA
AAACAGCTCAAAGGCTGGGCCACTTGCTAACCTCCACATGGCTAATCCACCTCCCTCCATTATT
CCCAAGTTATTATTTCCTAAGTCCTATACTCCATCGTGGCTGCTGTTGGGCTGTCCTTCCTACA
TGGTGGCTATGCTGTCTGTCCTGCACCTTCTCAGGCATCGGCGTCTTCCCTCTTCCACCTCTTC
TGGCATTGCTGACCTCCTTCCTCTCTACGTTGGTCCTAAAGGTCCCACCTCTGTCTGCCTTGCC
CAGCCATTGGCTGCTGCAAGTTTATTTGAGGGAGTGAGGATGATTATAGGAAAGACAGAAGACT
CAGAGACAAAAGTTAGAATTGGGAGGGCTACGGGTCAATACCACATCAGCCTCAAGTTTGCTTT
TCTTGGCCTTTTTATACTTCACAGTGCCATGGGAGACAAAGTCACAAGCTAGCAGAAACGACTG
CCATTTACACAGGATATCCGTTCCCATCAGGAGGCCTTTCTCTTCCTTCCACCAAGATTAATAG
AACATTCAGCCCCTTGCCTTGACCCTCAAATGTATTCTCTCATCGTTCAATGCATCAGCAGGCC
AGGAAATCTGCCGGCAGACCCTGACCTGCCTTGACGCTGCCAGGCAAGCAGGCTGTCGCAGAGG
CAGACGAAACGGCTCCTGACGCTCTCTGTAACCTAATCTCTCAGCAAATCATGTTTGATAATTT
AAGCTCTGGTGAGGAGTCTAGCTTATGACCTTGTCTTTGAGCACACGGGAGGAAGGTAGATACA
CCCTTGGCTACAGCCCCCACACTGCAAGCAGAAGCCAGTGCCTGCCGTAGCCCTCACCTTCTGC
TGTGTAGGCCCTGGGGACTGTTAGTAATAGTGTTCAGTTGTGGCTCTGAAGCACTAGGCCTTGC
TTCTGAGTTCTCAGAAGAACCTCTAAGTACAACAGAAGTGCTCTTAATTAACTCCACTTCTGAT
TCCTCGGAGCCTCGAGTCTCCAGCAGTCTTGGGAGCCACCTGCTGCAATCCGGCATGTGGCCGC
TGCCTTGCGTCTCCACTCCTGGTGCCAACAGGCCCCTGAGGCAGCCCACTCAAGGTGTCCGGGT
GCACCTTCTGCTGCTGATGGTGAGCTTGGAGTCCCAACCACAAGAGGACCAGGGGTGTGGCTTG
AGTGTTTACCTGGCATTGCACAAACCCTAGGCTTCACCCCCGGCACTGCAGCAGACAGAAAAAG
GAATAATCTAGCAAAAGTTAAAATCAAATGCTTTGATAAGGTGGGTTGCTCCTGTCTGCAAGGA
CAGTTCGGTGGTTAAGTGCGTGTGTCACCTTTATAGCTTGGTTCTCAGAACGATGTCTGTCAGC
ACACAGCTGCCTACAACTCTGGTTCCACTCAGCGCCCACTCGACGCCTTCTTACACTGTCAAAT
AAGTAAAAGTAAAAGGAAGACCTTTATTTTTAAATAAAAACGCGGTCAGAAAGTTTAATAGACA
TTGAGGGGTTTAAAATGAAGGAGATGAATGAGCTTAAATCCCTTCGTAGAATTACCCTACGTGC
TCACCCCACCTTTTCAACACCTGAGCTGGAAGCGGGGCAGGTGGCTCGGAGGTAGAGAGCCGGG
CCGTTACCGGGTAGGGGCATTGCCTGTTTGTGGCCTCTGTTGGAAAAAACCTTAAAAAGAGCGT
TTGTAATTTGCTGAATTGTGTGGAGATTCTATACTAAATAAAGCTCTTTTCAATAATC

hide sequence

RefSeq Acc Id:

XM_006228888 ⟹ XP_006228950

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,487,208 - 97,554,154 (-)	NCBI
mRatBN7.2	1	88,350,303 - 88,417,261 (-)	NCBI
Rnor_6.0	1	92,007,509 - 92,069,855 (-)	NCBI
Rnor_5.0	1	93,134,892 - 93,199,944 (-)	NCBI

Sequence:

show sequence

ATAGGTAGCTAAGAAAGGCAGGGTGGACAGAGCAATTTTTGTTAGAATTAGATGACAGGCTGCC
TTTTCATAGGTACTCATCTCAGACGGTGATCCACTACCAAAACTCTTATCTGGTTCACACCATT
CTTTAGTCACAGAACTCAGGAGGCTGAAGCAGAGTTGAGGCCAAATTGGTCTACATGAAGAGTT
TCAGGTCAGCCAGAACTACATAGTGAGACCCTATCTCAAAGACAGGAAAAGAGGCTGGCAAGCA
ACTGGTGAAGCATGTTAAGGAGAATTAACAATAAAGCCCAGAGCAGTACTACGGGGGTGGGGGA
TTGAGAGGCGTGACTTTGGAGACCCAAAAGTGTTCGCAAACAACTTCAAAAGCATGTATAAACT
TGTCACTAAACAACGTCAAAAGCAAGTATAGCTGGATCTGGGGTCAGGAGGTAGAACCGGGAAG
GTCCCCCAAGACTGTGTAACCTTTCCTCGGGGCACCAGGAACTCCAAAAACAGGAACATGCCAA
GCTTAAGCTCTGCCTCAGAACCTACAACCCCCAACGGCACTCTAAGCGGAAGTGTACCTCTTCC
TTCCGGTGTGCTCCGCACGAGACGGGGCGGGGCAGCGCGGGAGGCGGGGGCGGGGCCTTGCGTC
GACGAACAGCTGCTGGAACCAATGAATGCAGCGGCAGCGGCCCGGCCTCCCCGGCGCGCCCCTT
CCCGGGGCTGCAGACGCCCCCCAGGCCCATCCTTGCACCGCACCGCACATTGCCGGCGACAGCT
GGGTCCTCCGGGTCTTCAACTCGCTGTAGCCCGTAAAGTGGGCGCGTCCCCAAGGCCTGGGTGC
TTTGCGTGCTTCCTTGCCAATCCCGGGTAGCCCGCGAGGACTGCTGAGGCCGCAGGTCTGTGGC
TGCGGGTCGGGCCGCGAGGGGTGGTTGGAAGAACAATGCCTATGAGTCTTTGACATGATGATGT
ACATCCGGCAAAGAAAAGAGACAAAACCCGTTGAAGTTTCTGAGGATTTTCCGTCACCAAAAGA
AGATGTGAAGTTGGAAAAGAAATTGCCATCTGGTTGTGCCTCTGGAAGGTTCTGGAAGATCCTG
TCATCTGCAGTTGGCGGAACCGTGGCCCTTTGCATTGGACTTCTAACATCCGTGTACCTGGCCA
CCCTACATGAGAACGATTTGTGGTTTTCCAATATAAAGGAAGTAGAGCGAGAAATCTCATTCAG
GACAGAATGTGGACTGTACTATTCTTACTACAAGCAGATGCTGCAGGCTCCGACCCTCCTGCAA
GGTTTCCATGGCTTAATCTATGACAATAAAACCGAATCCATGAGGACGATCAACCTCCTTCAAA
GAATGAATATTTACCAAGAAGTTTTCCTCAGTGTTTTATACAGAGTTCTCCCCATACAGAAATA
TCTAGAGCCTGTTTATTTTTATATCTACACTCTTTTTGGGCTCCAAGCAGTCTATGTCACGGCC
CTTTATATAACCAGCTGGCTCCTTAGTGGCACCTGGCTGTCAGGCCTGCTGGCAGCTCTCTGGT
ACGTCACCAACAGAATCGACACGACCAGAGTTGAGTTCACCATCCCGCTGAGGGAGAACTGGGC
TCTGCCTTTTTTTGCAATTCAGATTGCAGCAATTACCTACTTCCTGAGACCAAACTTGCAGCCT
CTTTCTGAAAGGCTGACCCTTCTTGCCATCTTCGTATCAACTTTTCTCTTTAGCCTGACATGGC
AATTTAATCAGTTCATGATGCTGCTGCAGGCGCTGGTGCTGTTCATCCTGGACTCCTTGGACAT
GCTGCCAGCCGTGAAGGCCACCTGGCTGTACGGCATCCAGATAAGCTGCCTGCTCCTCGTCTGC
ATGCTTCAGTTTTTTAACTCCATGATCCTCGGATCGCTGCTCATCAGTTTTAACCTCTCAGTAT
TAATTGTAAGAAAACTTCAGAAGAACCTGAAGACTGGAACCTTCCTGATTAGGATTTGGAAACT
ATTGTTGCATTTGCTTCTAGTTTTCTGCTTGACACTTTTTCTCAACAACATTATTAAGAAAATT
CTTAACCTGAAGTCAGATGAACACATCTTTAAATTTCTGAAGGCCAAGTTTGGGTTTGGAGCAA
CAAGGGATTTCGATGCAAATCTCTATCTGTGTGAAGAAGCCTTTGGCCTCCTGCCTCTCAACAC
ATTCCAAAGGCTCTCAGAGACACTGCTTTTTTACGCGTACATGTTCGTCCTATTGGTCACAGTG
GTCACAGCGTCCGTTGTGGCCTTTCATAATCTCAGTGACTCCACAAGTCTGCAGCCTGTGGATC
AGACAAGAAAGCGTGTGGTTGACCTGAAGCCAGAAGCCGCATACAACCTGATCCACACCATTCT
GTTTGGTGTCTTGGCGTTGAGTACGATGAGGATGAAGTACCTATGGACCTCCCACATGTGTGTG
TTTGCGTCCTTCGGCCTGTGCAGCTCTGAGATCTGGGAACTGATTCTGAGGCTGGTTCATCTCT
GCAACCCGAAGAGGATCTGGGTCATGCGGTACTCGGTGCCCGTTCTCACCCTGCTGTGCCTGTG
CTGTAAGTCCTGGCCAGGAATGATGGATGAACTCTCCGAGTTGAAAGAATTCTATGACCCAGAT
ACAGTGGAACTGATGAACTGGATTAACTCCAATACACCGAGGAAGGCCGTGTTCGCTGGAAGCA
TGCAGTTGCTGGCTGGAGTCAAGCTGTGTACAGGACGGACGCTGACCAACCACCCACACTACGA
AGATAAAAGTCTGAGAGAGCGGACCCAGGCGGTTTATCAGATATATGCGAAGAGGTCCCCAGAG
GAAGTGCACGCGCTCCTGCGGTCCTTTGGCACCGACTTTGTGATCCTGGAAGACAGCATCTGCT
ATGAGCGCAGGCACCACAGGGGCTGCCGGCTGCGTGATTTGCTGGACGTCGCCAATGGACATGA
GATGGATGGGCCAGGAGAGAGTGACCCTGACTTGAGACCTGCAGACCACCCTCGCTTCTGTGAA
GAGATTAAAAGGAACCTGCCGTCCTACGCAGCCCACTTCACTAGAGTGTTCCAGAACAAGACAT
TCCATGTCTACAAACTGTCCAGAAACAAATAACCGTGTCCGTTCTTAAACCACAGTGCATCGAC
AGCTGGTGGAGCCCGTGTCTGTGAGTCAGGAGCAAGACTTGAATGCTGGGGTTGCAGACAGCCT
GCAGACAAGTCTTGCCACCATCGGATACGCCTTCCGCTAGCATCAGCCTTCTCCGCCGTCCTGT
CTCTGTCTTTTCTCTGAGTGTTCTTAGCCTCACGAGTGTACCTGGCCGAGGCTGGCCAGGGATG
CTGTTCCTGAGGGAGTGATGTGTGACTCACTGGGTGGCCTGGGAATGAAATGCTGGTGGTTGCC
AGTAACCCTGAGCCCGCTGTGAGCGAGTGGACCAGCTGCACACTTCAGTCACCGACCCTTCACC
ACTGAGACCGCTTGGTGGCTTTTTAACAGTTGATTGTCCTGTCTCGTTAAAATTTTACACCATT
TCCGGTTTACCATGCTTTCACATGTGTGAAGAAACAGATTATTTTAGATCTTTGAATCTTAAAT
ATTCCACTTGTGCTCTGAAATGTCACATGTTCAGTCGCGTGTGACACATTTAGAGTGTGTGCTT
GTTTTAATTCTGGGCACAGCAATCAGGGTGCTACCAGGCCAGGCATGGTGACACACTCCTCCTT
TAATCCCAGCACTTGCAGGCAGGGGCAGGGGCAGGGGC

hide sequence

RefSeq Acc Id:

XM_006228889 ⟹ XP_006228951

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,487,208 - 97,553,983 (-)	NCBI
mRatBN7.2	1	88,355,531 - 88,417,092 (-)	NCBI
Rnor_6.0	1	92,008,155 - 92,068,909 (-)	NCBI
Rnor_5.0	1	93,134,892 - 93,199,944 (-)	NCBI

Sequence:

show sequence

GGGCGGGGCGTGGGAGGGAGCGTCTCTGAGCGGGAGCTTGTGCCTCGAGGTCCCCCCGGCCGGC
TGGCATCTGGCCCACTCGTGGACTCGCCAGGGGTGGTTGGAAGAACAATGCCTATGAGTCTTTG
ACATGATGATGTACATCCGGCAAAGAAAAGAGACAAAACCCGTTGAAGTTTCTGAGGATTTTCC
GTCACCAAAAGAAGATGTGAAGTTGGAAAAGAAATTGCCATCTGGTTGTGCCTCTGGAAGGTTC
TGGAAGATCCTGTCATCTGCAGTTGGCGGAACCGTGGCCCTTTGCATTGGACTTCTAACATCCG
TGTACCTGGCCACCCTACATGAGAACGATTTGTGGTTTTCCAATATAAAGGAAGTAGAGCGAGA
AATCTCATTCAGGACAGAATGTGGACTGTACTATTCTTACTACAAGCAGATGCTGCAGGCTCCG
ACCCTCCTGCAAGGTTTCCATGGCTTAATCTATGACAATAAAACCGAATCCATGAGGACGATCA
ACCTCCTTCAAAGAATGAATATTTACCAAGAAGTTTTCCTCAGTGTTTTATACAGAGTTCTCCC
CATACAGAAATATCTAGAGCCTGTTTATTTTTATATCTACACTCTTTTTGGGCTCCAAGCAGTC
TATGTCACGGCCCTTTATATAACCAGCTGGCTCCTTAGTGGCACCTGGCTGTCAGGCCTGCTGG
CAGCTCTCTGGTACGTCACCAACAGAATCGACACGACCAGAGTTGAGTTCACCATCCCGCTGAG
GGAGAACTGGGCTCTGCCTTTTTTTGCAATTCAGATTGCAGCAATTACCTACTTCCTGAGACCA
AACTTGCAGCCTCTTTCTGAAAGGCTGACCCTTCTTGCCATCTTCGTATCAACTTTTCTCTTTA
GCCTGACATGGCAATTTAATCAGTTCATGATGCTGCTGCAGGCGCTGGTGCTGTTCATCCTGGA
CTCCTTGGACATGCTGCCAGCCGTGAAGGCCACCTGGCTGTACGGCATCCAGATAAGCTGCCTG
CTCCTCGTCTGCATGCTTCAGTTTTTTAACTCCATGATCCTCGGATCGCTGCTCATCAGTTTTA
ACCTCTCAGTATTAATTGTAAGAAAACTTCAGAAGAACCTGAAGACTGGAACCTTCCTGATTAG
GATTTGGAAACTATTGTTGCATTTGCTTCTAGTTTTCTGCTTGACACTTTTTCTCAACAACATT
ATTAAGAAAATTCTTAACCTGAAGTCAGATGAACACATCTTTAAATTTCTGAAGGCCAAGTTTG
GGTTTGGAGCAACAAGGGATTTCGATGCAAATCTCTATCTGTGTGAAGAAGCCTTTGGCCTCCT
GCCTCTCAACACATTCCAAAGGCTCTCAGAGACACTGCTTTTTTACGCGTACATGTTCGTCCTA
TTGGTCACAGTGGTCACAGCGTCCGTTGTGGCCTTTCATAATCTCAGTGACTCCACAAGTCTGC
AGCCTGTGGATCAGACAAGAAAGCGTGTGGTTGACCTGAAGCCAGAAGCCGCATACAACCTGAT
CCACACCATTCTGTTTGGTGTCTTGGCGTTGAGTACGATGAGGATGAAGTACCTATGGACCTCC
CACATGTGTGTGTTTGCGTCCTTCGGCCTGTGCAGCTCTGAGATCTGGGAACTGATTCTGAGGC
TGGTTCATCTCTGCAACCCGAAGAGGATCTGGGTCATGCGGTACTCGGTGCCCGTTCTCACCCT
GCTGTGCCTGTGCTGTAAGTCCTGGCCAGGAATGATGGATGAACTCTCCGAGTTGAAAGAATTC
TATGACCCAGATACAGTGGAACTGATGAACTGGATTAACTCCAATACACCGAGGAAGGCCGTGT
TCGCTGGAAGCATGCAGTTGCTGGCTGGAGTCAAGCTGTGTACAGGACGGACGCTGACCAACCA
CCCACACTACGAAGATAAAAGTCTGAGAGAGCGGACCCAGGCGGTTTATCAGATATATGCGAAG
AGGTCCCCAGAGGAAGTGCACGCGCTCCTGCGGTCCTTTGGCACCGACTTTGTGATCCTGGAAG
ACAGCATCTGCTATGAGCGCAGGCACCACAGGGGCTGCCGGCTGCGTGATTTGCTGGACGTCGC
CAATGGACATGAGATGGATGGGCCAGGAGAGAGTGACCCTGACTTGAGACCTGCAGACCACCCT
CGCTTCTGTGAAGAGATTAAAAGGAACCTGCCGTCCTACGCAGCCCACTTCACTAGAGTGTTCC
AGAACAAGACATTCCATGTCTACAAACTGTCCAGAAACAAATAA

hide sequence

RefSeq Acc Id:

XM_008759164 ⟹ XP_008757386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,487,208 - 97,552,238 (-)	NCBI
mRatBN7.2	1	88,350,303 - 88,415,343 (-)	NCBI
Rnor_6.0	1	92,007,509 - 92,067,348 (-)	NCBI

Sequence:

show sequence

GCAGCATTTTGGATTACTTTCACTTCTGAGAATTAACATATGTCACAATCTAATAGGGAAAAAA
AAAAATTGGTGCCACTTACGAAGGACACTTGTTCCAGCACCCAGAAACTCTGACTGAACTTTGA
TTATATTGGCTTATCAGCTGTAATCAGTAAAAGAGCTTTGATGAGAAGGAATCCTTGGTCAGTT
CGGTGTTGATTAACTTACAGTGGCAGTGTCATCGGGTCCTTTAGAGGGACGCTTCGCCTGCCCT
AGCCAACTGTCTCTTTCCTTGGTACCTTGTCTGGTGTGCCCTGTGCGTGCTGCACCTTCCAGGT
TGTGCCTCTGGAAGGTTCTGGAAGATCCTGTCATCTGCAGTTGGCGGAACCGTGGCCCTTTGCA
TTGGACTTCTAACATCCGTGTACCTGGCCACCCTACATGAGAACGATTTGTGGTTTTCCAATAT
AAAGGTTTCCATGGCTTAATCTATGACAATAAAACCGAATCCATGAGGACGATCAACCTCCTTC
AAAGAATGAATATTTACCAAGAAGTTTTCCTCAGTGTTTTATACAGAGTTCTCCCCATACAGAA
ATATCTAGAGCCTGTTTATTTTTATATCTACACTCTTTTTGGGCTCCAAGCAGTCTATGTCACG
GCCCTTTATATAACCAGCTGGCTCCTTAGTGGCACCTGGCTGTCAGGCCTGCTGGCAGCTCTCT
GGTACGTCACCAACAGAATCGACACGACCAGAGTTGAGTTCACCATCCCGCTGAGGGAGAACTG
GGCTCTGCCTTTTTTTGCAATTCAGATTGCAGCAATTACCTACTTCCTGAGACCAAACTTGCAG
CCTCTTTCTGAAAGGCTGACCCTTCTTGCCATCTTCGTATCAACTTTTCTCTTTAGCCTGACAT
GGCAATTTAATCAGTTCATGATGCTGCTGCAGGCGCTGGTGCTGTTCATCCTGGACTCCTTGGA
CATGCTGCCAGCCGTGAAGGCCACCTGGCTGTACGGCATCCAGATAAGCTGCCTGCTCCTCGTC
TGCATGCTTCAGTTTTTTAACTCCATGATCCTCGGATCGCTGCTCATCAGTTTTAACCTCTCAG
TATTAATTGTAAGAAAACTTCAGAAGAACCTGAAGACTGGAACCTTCCTGATTAGGATTTGGAA
ACTATTGTTGCATTTGCTTCTAGTTTTCTGCTTGACACTTTTTCTCAACAACATTATTAAGAAA
ATTCTTAACCTGAAGTCAGATGAACACATCTTTAAATTTCTGAAGGCCAAGTTTGGGTTTGGAG
CAACAAGGGATTTCGATGCAAATCTCTATCTGTGTGAAGAAGCCTTTGGCCTCCTGCCTCTCAA
CACATTCCAAAGGCTCTCAGAGACACTGCTTTTTTACGCGTACATGTTCGTCCTATTGGTCACA
GTGGTCACAGCGTCCGTTGTGGCCTTTCATAATCTCAGTGACTCCACAAGTCTGCAGCCTGTGG
ATCAGACAAGAAAGCGTGTGGTTGACCTGAAGCCAGAAGCCGCATACAACCTGATCCACACCAT
TCTGTTTGGTGTCTTGGCGTTGAGTACGATGAGGATGAAGTACCTATGGACCTCCCACATGTGT
GTGTTTGCGTCCTTCGGCCTGTGCAGCTCTGAGATCTGGGAACTGATTCTGAGGCTGGTTCATC
TCTGCAACCCGAAGAGGATCTGGGTCATGCGGTACTCGGTGCCCGTTCTCACCCTGCTGTGCCT
GTGCTGTAAGTCCTGGCCAGGAATGATGGATGAACTCTCCGAGTTGAAAGAATTCTATGACCCA
GATACAGTGGAACTGATGAACTGGATTAACTCCAATACACCGAGGAAGGCCGTGTTCGCTGGAA
GCATGCAGTTGCTGGCTGGAGTCAAGCTGTGTACAGGACGGACGCTGACCAACCACCCACACTA
CGAAGATAAAAGTCTGAGAGAGCGGACCCAGGCGGTTTATCAGATATATGCGAAGAGGTCCCCA
GAGGAAGTGCACGCGCTCCTGCGGTCCTTTGGCACCGACTTTGTGATCCTGGAAGACAGCATCT
GCTATGAGCGCAGGCACCACAGGGGCTGCCGGCTGCGTGATTTGCTGGACGTCGCCAATGGACA
TGAGATGGATGGGCCAGGAGAGAGTGACCCTGACTTGAGACCTGCAGACCACCCTCGCTTCTGT
GAAGAGATTAAAAGGAACCTGCCGTCCTACGCAGCCCACTTCACTAGAGTGTTCCAGAACAAGA
CATTCCATGTCTACAAACTGTCCAGAAACAAATAACCGTGTCCGTTCTTAAACCACAGTGCATC
GACAGCTGGTGGAGCCCGTGTCTGTGAGTCAGGAGCAAGACTTGAATGCTGGGGTTGCAGACAG
CCTGCAGACAAGTCTTGCCACCATCGGATACGCCTTCCGCTAGCATCAGCCTTCTCCGCCGTCC
TGTCTCTGTCTTTTCTCTGAGTGTTCTTAGCCTCACGAGTGTACCTGGCCGAGGCTGGCCAGGG
ATGCTGTTCCTGAGGGAGTGATGTGTGACTCACTGGGTGGCCTGGGAATGAAATGCTGGTGGTT
GCCAGTAACCCTGAGCCCGCTGTGAGCGAGTGGACCAGCTGCACACTTCAGTCACCGACCCTTC
ACCACTGAGACCGCTTGGTGGCTTTTTAACAGTTGATTGTCCTGTCTCGTTAAAATTTTACACC
ATTTCCGGTTTACCATGCTTTCACATGTGTGAAGAAACAGATTATTTTAGATCTTTGAATCTTA
AATATTCCACTTGTGCTCTGAAATGTCACATGTTCAGTCGCGTGTGACACATTTAGAGTGTGTG
CTTGTTTTAATTCTGGGCACAGCAATCAGGGTGCTACCAGGCCAGGCATGGTGACACACTCCTC
CTTTAATCCCAGCACTTGCAGGCAGGGGCAGGGGCAGGGGC

hide sequence

RefSeq Acc Id:

XM_017589127 ⟹ XP_017444616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,487,208 - 97,552,237 (-)	NCBI
mRatBN7.2	1	88,350,303 - 88,415,343 (-)	NCBI
Rnor_6.0	1	92,007,509 - 92,067,348 (-)	NCBI

Sequence:

show sequence

GCAGCATTTTGGATTACTTTCACTTCTGAGAATTAACATATGTCACAATCTAATAGGGAAAAAA
AAAAATTGGTGCCACTTACGAAGGACACTTGTTCCAGCACCCAGAAACTCTGACTGAACTTTGA
TTATATTGGCTTATCAGCTGTAATCAGTAAAAGAGCTTTGATGAGAAGGAATCCTTGGTCAGTT
CGGTGTTGATTAACTTACAGTGGCAGTGTCATCGGGTCCTTTAGAGGGACGCTTCGCCTGCCCT
AGCCAACTGTCTCTTTCCTTGGTACCTTGTCTGGTGTGCCCTGTGCGTGCTGCACCTTCCAGGT
TGTGCCTCTGGAAGGTTCTGGAAGATCCTGTCATCTGCAGTTGGCGGAACCGTGGCCCTTTGCA
TTGGACTTCTAACATCCGTGTACCTGGCCACCCTACATGAGAACGATTTGTGGTTTTCCAATAT
AAAGGAAGTAGAGCGAGAAATCTCATTCAGGACAGAATGTGGACTGTACTATTCTTACTACAAG
CAGATGCTGCAGGCTCCGACCCTCCTGCAAGGTTTCCATGGCTTAATCTATGACAATAAAACCG
AATCCATGAGGACGATCAACCTCCTTCAAAGAATGAATATTTACCAAGAAGTTTTCCTCAGTGT
TTTATACAGAGTTCTCCCCATACAGAAATATCTAGAGCCTGTTTATTTTTATATCTACACTCTT
TTTGGGCTCCAAGCAGTCTATGTCACGGCCCTTTATATAACCAGCTGGCTCCTTAGTGGCACCT
GGCTGTCAGGCCTGCTGGCAGCTCTCTGGTACGTCACCAACAGAATCGACACGACCAGAGTTGA
GTTCACCATCCCGCTGAGGGAGAACTGGGCTCTGCCTTTTTTTGCAATTCAGATTGCAGCAATT
ACCTACTTCCTGAGACCAAACTTGCAGCCTCTTTCTGAAAGGCTGACCCTTCTTGCCATCTTCG
TATCAACTTTTCTCTTTAGCCTGACATGGCAATTTAATCAGTTCATGATGCTGCTGCAGGCGCT
GGTGCTGTTCATCCTGGACTCCTTGGACATGCTGCCAGCCGTGAAGGCCACCTGGCTGTACGGC
ATCCAGATAAGCTGCCTGCTCCTCGTCTGCATGCTTCAGTTTTTTAACTCCATGATCCTCGGAT
CGCTGCTCATCAGTTTTAACCTCTCAGTATTAATTGTAAGAAAACTTCAGAAGAACCTGAAGAC
TGGAACCTTCCTGATTAGGATTTGGAAACTATTGTTGCATTTGCTTCTAGTTTTCTGCTTGACA
CTTTTTCTCAACAACATTATTAAGAAAATTCTTAACCTGAAGTCAGATGAACACATCTTTAAAT
TTCTGAAGGCCAAGTTTGGGTTTGGAGCAACAAGGGATTTCGATGCAAATCTCTATCTGTGTGA
AGAAGCCTTTGGCCTCCTGCCTCTCAACACATTCCAAAGGCTCTCAGAGACACTGCTTTTTTAC
GCGTACATGTTCGTCCTATTGGTCACAGTGGTCACAGCGTCCGTTGTGGCCTTTCATAATCTCA
GTGACTCCACAAGTCTGCAGCCTGTGGATCAGACAAGAAAGCGTGTGGTTGACCTGAAGCCAGA
AGCCGCATACAACCTGATCCACACCATTCTGTTTGGTGTCTTGGCGTTGAGTACGATGAGGATG
AAGTACCTATGGACCTCCCACATGTGTGTGTTTGCGTCCTTCGGCCTGTGCAGCTCTGAGATCT
GGGAACTGATTCTGAGGCTGGTTCATCTCTGCAACCCGAAGAGGATCTGGGTCATGCGGTACTC
GGTGCCCGTTCTCACCCTGCTGTGCCTGTGCTGTAAGTCCTGGCCAGGAATGATGGATGAACTC
TCCGAGTTGAAAGAATTCTATGACCCAGATACAGTGGAACTGATGAACTGGATTAACTCCAATA
CACCGAGGAAGGCCGTGTTCGCTGGAAGCATGCAGTTGCTGGCTGGAGTCAAGCTGTGTACAGG
ACGGACGCTGACCAACCACCCACACTACGAAGATAAAAGTCTGAGAGAGCGGACCCAGGCGGTT
TATCAGATATATGCGAAGAGGTCCCCAGAGGAAGTGCACGCGCTCCTGCGGTCCTTTGGCACCG
ACTTTGTGATCCTGGAAGACAGCATCTGCTATGAGCGCAGGCACCACAGGGGCTGCCGGCTGCG
TGATTTGCTGGACGTCGCCAATGGACATGAGATGGATGGGCCAGGAGAGAGTGACCCTGACTTG
AGACCTGCAGACCACCCTCGCTTCTGTGAAGAGATTAAAAGGAACCTGCCGTCCTACGCAGCCC
ACTTCACTAGAGTGTTCCAGAACAAGACATTCCATGTCTACAAACTGTCCAGAAACAAATAACC
GTGTCCGTTCTTAAACCACAGTGCATCGACAGCTGGTGGAGCCCGTGTCTGTGAGTCAGGAGCA
AGACTTGAATGCTGGGGTTGCAGACAGCCTGCAGACAAGTCTTGCCACCATCGGATACGCCTTC
CGCTAGCATCAGCCTTCTCCGCCGTCCTGTCTCTGTCTTTTCTCTGAGTGTTCTTAGCCTCACG
AGTGTACCTGGCCGAGGCTGGCCAGGGATGCTGTTCCTGAGGGAGTGATGTGTGACTCACTGGG
TGGCCTGGGAATGAAATGCTGGTGGTTGCCAGTAACCCTGAGCCCGCTGTGAGCGAGTGGACCA
GCTGCACACTTCAGTCACCGACCCTTCACCACTGAGACCGCTTGGTGGCTTTTTAACAGTTGAT
TGTCCTGTCTCGTTAAAATTTTACACCATTTCCGGTTTACCATGCTTTCACATGTGTGAAGAAA
CAGATTATTTTAGATCTTTGAATCTTAAATATTCCACTTGTGCTCTGAAATGTCACATGTTCAG
TCGCGTGTGACACATTTAGAGTGTGTGCTTGTTTTAATTCTGGGCACAGCAATCAGGGTGCTAC
CAGGCCAGGCATGGTGACACACTCCTCCTTTAATCCCAGCACTTGCAGGCAGGGGCAGGGGCAG
GGGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001129307	(Get FASTA)	NCBI Sequence Viewer
	XP_006228950	(Get FASTA)	NCBI Sequence Viewer
	XP_006228951	(Get FASTA)	NCBI Sequence Viewer
	XP_008757386	(Get FASTA)	NCBI Sequence Viewer
	XP_017444616	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM07608	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033949
	ENSRNOP00000033949.3
	ENSRNOP00000102814.1

RefSeq Acc Id:

NP_001129307 ⟸ NM_001135835

- UniProtKB:

D4A9G5 (UniProtKB/TrEMBL), A6JAC6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMMYIRQRKETKPVEVSEDFPSPKEDVKLEKKLPSGCASGRFWKILSSAVGGTVALCIGLLTSV
YLATLHENDLWFSNIKEVEREISFRTECGLYYSYYKQMLQAPTLLQGFHGLIYDNKTESMRTIN
LLQRMNIYQEVFLSVLYRVLPIQKYLEPVYFYIYTLFGLQAVYVTALYITSWLLSGTWLSGLLA
ALWYVTNRIDTTRVEFTIPLRENWALPFFAIQIAAITYFLRPNLQPLSERLTLLAIFVSTFLFS
LTWQFNQFMMLLQALVLFILDSLDMLPAVKATWLYGIQISCLLLVCMLQFFNSMILGSLLISFN
LSVLIVRKLQKNLKTGTFLIRIWKLLLHLLLVFCLTLFLNNIIKKILNLKSDEHIFKFLKAKFG
FGATRDFDANLYLCEEAFGLLPLNTFQRLSETLLFYAYMFVLLVTVVTASVVAFHNLSDSTSLQ
PVDQTRKRVVDLKPEAAYNLIHTILFGVLALSTMRMKYLWTSHMCVFASFGLCSSEIWELILRL
VHLCNPKRIWVMRYSVPVLTLLCLCCKSWPGMMDELSELKEFYDPDTVELMNWINSNTPRKAVF
AGSMQLLAGVKLCTGRTLTNHPHYEDKSLRERTQAVYQIYAKRSPEEVHALLRSFGTDFVILED
SICYERRHHRGCRLRDLLDVANGHEMDGPGESDPDLRPADHPRFCEEIKRNLPSYAAHFTRVFQ
NKTFHVYKLSRNK

hide sequence

RefSeq Acc Id:	XP_006228950 ⟸ XM_006228888
- Peptide Label:	isoform X1
- UniProtKB:	D4A9G5 (UniProtKB/TrEMBL), A6JAC6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMMYIRQRKETKPVEVSEDFPSPKEDVKLEKKLPSGCASGRFWKILSSAVGGTVALCIGLLTSV YLATLHENDLWFSNIKEVEREISFRTECGLYYSYYKQMLQAPTLLQGFHGLIYDNKTESMRTIN LLQRMNIYQEVFLSVLYRVLPIQKYLEPVYFYIYTLFGLQAVYVTALYITSWLLSGTWLSGLLA ALWYVTNRIDTTRVEFTIPLRENWALPFFAIQIAAITYFLRPNLQPLSERLTLLAIFVSTFLFS LTWQFNQFMMLLQALVLFILDSLDMLPAVKATWLYGIQISCLLLVCMLQFFNSMILGSLLISFN LSVLIVRKLQKNLKTGTFLIRIWKLLLHLLLVFCLTLFLNNIIKKILNLKSDEHIFKFLKAKFG FGATRDFDANLYLCEEAFGLLPLNTFQRLSETLLFYAYMFVLLVTVVTASVVAFHNLSDSTSLQ PVDQTRKRVVDLKPEAAYNLIHTILFGVLALSTMRMKYLWTSHMCVFASFGLCSSEIWELILRL VHLCNPKRIWVMRYSVPVLTLLCLCCKSWPGMMDELSELKEFYDPDTVELMNWINSNTPRKAVF AGSMQLLAGVKLCTGRTLTNHPHYEDKSLRERTQAVYQIYAKRSPEEVHALLRSFGTDFVILED SICYERRHHRGCRLRDLLDVANGHEMDGPGESDPDLRPADHPRFCEEIKRNLPSYAAHFTRVFQ NKTFHVYKLSRNK hide sequence

RefSeq Acc Id:	XP_006228951 ⟸ XM_006228889
- Peptide Label:	isoform X1
- UniProtKB:	D4A9G5 (UniProtKB/TrEMBL), A6JAC6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMMYIRQRKETKPVEVSEDFPSPKEDVKLEKKLPSGCASGRFWKILSSAVGGTVALCIGLLTSV YLATLHENDLWFSNIKEVEREISFRTECGLYYSYYKQMLQAPTLLQGFHGLIYDNKTESMRTIN LLQRMNIYQEVFLSVLYRVLPIQKYLEPVYFYIYTLFGLQAVYVTALYITSWLLSGTWLSGLLA ALWYVTNRIDTTRVEFTIPLRENWALPFFAIQIAAITYFLRPNLQPLSERLTLLAIFVSTFLFS LTWQFNQFMMLLQALVLFILDSLDMLPAVKATWLYGIQISCLLLVCMLQFFNSMILGSLLISFN LSVLIVRKLQKNLKTGTFLIRIWKLLLHLLLVFCLTLFLNNIIKKILNLKSDEHIFKFLKAKFG FGATRDFDANLYLCEEAFGLLPLNTFQRLSETLLFYAYMFVLLVTVVTASVVAFHNLSDSTSLQ PVDQTRKRVVDLKPEAAYNLIHTILFGVLALSTMRMKYLWTSHMCVFASFGLCSSEIWELILRL VHLCNPKRIWVMRYSVPVLTLLCLCCKSWPGMMDELSELKEFYDPDTVELMNWINSNTPRKAVF AGSMQLLAGVKLCTGRTLTNHPHYEDKSLRERTQAVYQIYAKRSPEEVHALLRSFGTDFVILED SICYERRHHRGCRLRDLLDVANGHEMDGPGESDPDLRPADHPRFCEEIKRNLPSYAAHFTRVFQ NKTFHVYKLSRNK hide sequence

RefSeq Acc Id:	XP_008757386 ⟸ XM_008759164
- Peptide Label:	isoform X3
- UniProtKB:	A6JAC6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRTINLLQRMNIYQEVFLSVLYRVLPIQKYLEPVYFYIYTLFGLQAVYVTALYITSWLLSGTWL SGLLAALWYVTNRIDTTRVEFTIPLRENWALPFFAIQIAAITYFLRPNLQPLSERLTLLAIFVS TFLFSLTWQFNQFMMLLQALVLFILDSLDMLPAVKATWLYGIQISCLLLVCMLQFFNSMILGSL LISFNLSVLIVRKLQKNLKTGTFLIRIWKLLLHLLLVFCLTLFLNNIIKKILNLKSDEHIFKFL KAKFGFGATRDFDANLYLCEEAFGLLPLNTFQRLSETLLFYAYMFVLLVTVVTASVVAFHNLSD STSLQPVDQTRKRVVDLKPEAAYNLIHTILFGVLALSTMRMKYLWTSHMCVFASFGLCSSEIWE LILRLVHLCNPKRIWVMRYSVPVLTLLCLCCKSWPGMMDELSELKEFYDPDTVELMNWINSNTP RKAVFAGSMQLLAGVKLCTGRTLTNHPHYEDKSLRERTQAVYQIYAKRSPEEVHALLRSFGTDF VILEDSICYERRHHRGCRLRDLLDVANGHEMDGPGESDPDLRPADHPRFCEEIKRNLPSYAAHF TRVFQNKTFHVYKLSRNK hide sequence

RefSeq Acc Id:	XP_017444616 ⟸ XM_017589127
- Peptide Label:	isoform X2
- UniProtKB:	A6JAC6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLQAPTLLQGFHGLIYDNKTESMRTINLLQRMNIYQEVFLSVLYRVLPIQKYLEPVYFYIYTLF GLQAVYVTALYITSWLLSGTWLSGLLAALWYVTNRIDTTRVEFTIPLRENWALPFFAIQIAAIT YFLRPNLQPLSERLTLLAIFVSTFLFSLTWQFNQFMMLLQALVLFILDSLDMLPAVKATWLYGI QISCLLLVCMLQFFNSMILGSLLISFNLSVLIVRKLQKNLKTGTFLIRIWKLLLHLLLVFCLTL FLNNIIKKILNLKSDEHIFKFLKAKFGFGATRDFDANLYLCEEAFGLLPLNTFQRLSETLLFYA YMFVLLVTVVTASVVAFHNLSDSTSLQPVDQTRKRVVDLKPEAAYNLIHTILFGVLALSTMRMK YLWTSHMCVFASFGLCSSEIWELILRLVHLCNPKRIWVMRYSVPVLTLLCLCCKSWPGMMDELS ELKEFYDPDTVELMNWINSNTPRKAVFAGSMQLLAGVKLCTGRTLTNHPHYEDKSLRERTQAVY QIYAKRSPEEVHALLRSFGTDFVILEDSICYERRHHRGCRLRDLLDVANGHEMDGPGESDPDLR PADHPRFCEEIKRNLPSYAAHFTRVFQNKTFHVYKLSRNK hide sequence

Ensembl Acc Id:

ENSRNOP00000033949 ⟸ ENSRNOT00000039115

Ensembl Acc Id:

ENSRNOP00000102814 ⟸ ENSRNOT00000127955

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9G5-F1-model_v2	AlphaFold	D4A9G5	1-717	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689974

Promoter ID:

EPDNEW_R499

Type:

initiation region

Name:

Dpy19l3_1

Description:

dpy-19 like C-mannosyltransferase 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	92,069,123 - 92,069,183	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308334	AgrOrtholog
BioCyc Gene	G2FUF-59965	BioCyc
Ensembl Genes	ENSRNOG00000021573	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000039115	ENTREZGENE
	ENSRNOT00000039115.5	UniProtKB/TrEMBL
	ENSRNOT00000127955.1	UniProtKB/TrEMBL
InterPro	Dpy-19	UniProtKB/TrEMBL
	Dpy19L3	UniProtKB/TrEMBL
KEGG Report	rno:308519	UniProtKB/TrEMBL
NCBI Gene	308519	ENTREZGENE
PANTHER	PTHR31488	UniProtKB/TrEMBL
	PTHR31488:SF4	UniProtKB/TrEMBL
Pfam	DUF2211	UniProtKB/TrEMBL
PhenoGen	Dpy19l3	PhenoGen
RatGTEx	ENSRNOG00000021573	RatGTEx
UniProt	A0ABK0LNZ9_RAT	UniProtKB/TrEMBL
	A6JAC6	ENTREZGENE, UniProtKB/TrEMBL
	D4A9G5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-08-16	Dpy19l3	dpy-19 like C-mannosyltransferase 3	Dpy19l3	dpy-19-like 3 (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Dpy19l3	dpy-19-like 3 (C. elegans)	Dpy19l3_predicted	dpy-19-like 3 (C. elegans) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Dpy19l3_predicted	dpy-19-like 3 (C. elegans) (predicted)	RGD1308334_predicted	similar to hypothetical protein FLJ32949 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1308334_predicted	similar to hypothetical protein FLJ32949 (predicted)	LOC308519_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC308519_predicted	similar to hypothetical protein FLJ32949 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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