Nebl (nebulette) - Rat Genome Database

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Gene: Nebl (nebulette) Rattus norvegicus
Analyze
Symbol: Nebl
Name: nebulette
RGD ID: 1308315
Description: Predicted to enable actin filament binding activity; filamin binding activity; and tropomyosin binding activity. Predicted to be involved in cardiac muscle thin filament assembly. Predicted to be located in stress fiber. Predicted to be active in Z disc. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human NEBL (nebulette); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Lasp-2; LOC307189
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81785,022,953 - 85,374,848 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1785,022,963 - 85,374,172 (-)EnsemblGRCr8
mRatBN7.21780,113,891 - 80,466,331 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1780,118,543 - 80,466,210 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1783,577,385 - 83,689,906 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01787,412,819 - 87,525,339 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01781,428,124 - 81,547,706 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01784,141,014 - 84,247,038 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1784,140,489 - 84,488,601 (-)Ensemblrn6Rnor6.0
Rnor_5.01785,874,473 - 85,979,946 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41791,518,949 - 91,626,869 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1779,405,191 - 79,510,565 (-)NCBICelera
RGSC_v3.11791,529,781 - 91,637,623 (-)NCBI
Cytogenetic Map17q12.3NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-dimethoxyphenol  (ISO)
2-palmitoylglycerol  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bicalutamide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
Bufotalin  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cantharidin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chenodeoxycholic acid  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cyproconazole  (ISO)
deoxycholic acid  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
furfural  (ISO)
gentamycin  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
inulin  (ISO)
isoindoles  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
melphalan  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nitrofen  (EXP)
okadaic acid  (ISO)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
potassium bromate  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
thalidomide  (ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichloroethene  (EXP)
triclosan  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
stress fiber  (IEA,ISO,ISS)
Z disc  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Characterization of the human nebulette gene: a polymorphism in an actin-binding motif is associated with nonfamilial idiopathic dilated cardiomyopathy. Arimura T, etal., Hum Genet. 2000 Nov;107(5):440-51.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10470015   PMID:11822876   PMID:17987659   PMID:18823973   PMID:19056867   PMID:20951326   PMID:35352799  


Genomics

Comparative Map Data
Nebl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81785,022,953 - 85,374,848 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1785,022,963 - 85,374,172 (-)EnsemblGRCr8
mRatBN7.21780,113,891 - 80,466,331 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1780,118,543 - 80,466,210 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1783,577,385 - 83,689,906 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01787,412,819 - 87,525,339 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01781,428,124 - 81,547,706 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01784,141,014 - 84,247,038 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1784,140,489 - 84,488,601 (-)Ensemblrn6Rnor6.0
Rnor_5.01785,874,473 - 85,979,946 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41791,518,949 - 91,626,869 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1779,405,191 - 79,510,565 (-)NCBICelera
RGSC_v3.11791,529,781 - 91,637,623 (-)NCBI
Cytogenetic Map17q12.3NCBI
NEBL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381020,779,973 - 21,293,050 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1020,779,973 - 21,293,011 (-)Ensemblhg38GRCh38
GRCh371021,068,902 - 21,581,979 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361021,110,093 - 21,503,122 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1020,755,603 - 21,149,774 (-)NCBICelera
Cytogenetic Map10p12.31NCBI
HuRef1020,732,574 - 21,126,423 (-)NCBIHuRef
CHM1_11021,069,266 - 21,463,405 (-)NCBICHM1_1
T2T-CHM13v2.01020,798,520 - 21,311,782 (-)NCBIT2T-CHM13v2.0
Nebl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39217,347,484 - 17,740,634 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl217,348,720 - 17,736,275 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38217,342,673 - 17,734,949 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl217,343,909 - 17,731,464 (-)Ensemblmm10GRCm38
MGSCv37217,268,361 - 17,652,695 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36217,264,488 - 17,648,822 (-)NCBIMGSCv36mm8
Celera217,245,443 - 17,628,584 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map212.43NCBI
Nebl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554297,358,758 - 7,725,648 (+)Ensembl
ChiLan1.0NW_0049554297,559,994 - 7,730,683 (+)NCBIChiLan1.0ChiLan1.0
NEBL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2833,464,509 - 33,860,276 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11033,469,832 - 33,865,599 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01020,941,514 - 21,336,931 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11021,238,946 - 21,632,236 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1021,244,693 - 21,632,236 (-)EnsemblpanPan2panpan1.1
NEBL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1211,892,132 - 12,234,421 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl211,858,209 - 12,229,718 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha210,585,197 - 10,927,388 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0210,144,081 - 10,485,626 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl210,143,014 - 10,485,629 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.129,454,067 - 9,796,053 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.029,541,116 - 9,882,431 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.029,709,999 - 10,052,067 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nebl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934420,968,220 - 21,302,353 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365206,658,920 - 6,987,116 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365206,658,555 - 6,992,643 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEBL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1053,602,936 - 53,958,047 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11053,602,929 - 53,957,869 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21059,371,370 - 59,719,071 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEBL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1920,620,745 - 20,999,148 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605126,340,158 - 26,720,719 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nebl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247967,133,923 - 7,493,673 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247967,133,915 - 7,498,706 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nebl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1146,519,453 - 6,633,693 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nebl
1479 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:81
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000000158, ENSRNOT00000072594
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)174238816487388164Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174238816487388164Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)174605012691050126Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)177061350286062352Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175819406487388164Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175560459793006569Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)175482950393515804Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)174265489587654895Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1300131Bp193Blood pressure QTL 1933.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176855004093515804Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
61466Niddm12Non-insulin dependent diabetes mellitus QTL 123.20.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)176515487293515804Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)176456982086954580Rat

Markers in Region
BE101931  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21780,226,097 - 80,226,247 (+)MAPPERmRatBN7.2
Rnor_6.01784,248,558 - 84,248,707NCBIRnor6.0
Rnor_5.01785,981,466 - 85,981,615UniSTSRnor5.0
RGSC_v3.41791,628,389 - 91,628,538UniSTSRGSC3.4
Celera1779,512,085 - 79,512,234UniSTS
RH 3.4 Map17816.1UniSTS
Cytogenetic Map17q12.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 90 89 58 92 58 6 355 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000158   ⟹   ENSRNOP00000000158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1784,485,837 - 84,488,480 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000057734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1784,166,746 - 84,180,087 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000068553   ⟹   ENSRNOP00000061086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1785,022,963 - 85,135,296 (-)Ensembl
mRatBN7.2 Ensembl1780,118,543 - 80,224,578 (-)Ensembl
Rnor_6.0 Ensembl1784,141,014 - 84,247,038 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075983   ⟹   ENSRNOP00000068122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1784,166,050 - 84,488,601 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1780,118,543 - 80,324,872 (-)Ensembl
Rnor_6.0 Ensembl1784,140,489 - 84,171,298 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1780,118,543 - 80,402,603 (-)Ensembl
Rnor_6.0 Ensembl1784,140,938 - 84,426,652 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082549   ⟹   ENSRNOP00000069994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1785,022,963 - 85,135,296 (-)Ensembl
mRatBN7.2 Ensembl1780,118,543 - 80,224,578 (-)Ensembl
Rnor_6.0 Ensembl1784,140,815 - 84,249,243 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098790   ⟹   ENSRNOP00000084416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1780,118,543 - 80,466,210 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112505   ⟹   ENSRNOP00000097039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1785,022,963 - 85,135,296 (-)Ensembl
mRatBN7.2 Ensembl1780,118,543 - 80,224,578 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115953   ⟹   ENSRNOP00000091118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1785,072,387 - 85,135,296 (-)Ensembl
mRatBN7.2 Ensembl1780,160,050 - 80,224,578 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118976   ⟹   ENSRNOP00000080969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1785,068,788 - 85,135,296 (-)Ensembl
mRatBN7.2 Ensembl1780,160,275 - 80,224,578 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000133444   ⟹   ENSRNOP00000103393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1785,022,963 - 85,135,296 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000151292   ⟹   ENSRNOP00000101610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1785,022,963 - 85,232,899 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000153710   ⟹   ENSRNOP00000101527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1785,022,963 - 85,374,172 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167207   ⟹   ENSRNOP00000105010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1785,022,963 - 85,309,331 (-)Ensembl
RefSeq Acc Id: NM_001389243   ⟹   NP_001376172
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,022,963 - 85,135,296 (-)NCBI
mRatBN7.21780,114,449 - 80,226,786 (-)NCBI
RefSeq Acc Id: XM_039095820   ⟹   XP_038951748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,022,953 - 85,184,106 (-)NCBI
mRatBN7.21780,113,891 - 80,275,609 (-)NCBI
RefSeq Acc Id: XM_039095822   ⟹   XP_038951750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,022,953 - 85,154,690 (-)NCBI
mRatBN7.21780,113,891 - 80,240,040 (-)NCBI
RefSeq Acc Id: XM_039095825   ⟹   XP_038951753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,022,953 - 85,135,101 (-)NCBI
mRatBN7.21780,113,891 - 80,226,593 (-)NCBI
RefSeq Acc Id: XM_039095827   ⟹   XP_038951755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,022,953 - 85,374,848 (-)NCBI
mRatBN7.21780,113,891 - 80,466,331 (-)NCBI
RefSeq Acc Id: XM_063276521   ⟹   XP_063132591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,022,953 - 85,184,106 (-)NCBI
RefSeq Acc Id: XM_063276522   ⟹   XP_063132592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,022,953 - 85,184,106 (-)NCBI
RefSeq Acc Id: XM_063276523   ⟹   XP_063132593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,022,953 - 85,184,106 (-)NCBI
RefSeq Acc Id: XM_063276524   ⟹   XP_063132594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,022,953 - 85,374,848 (-)NCBI
RefSeq Acc Id: XM_063276525   ⟹   XP_063132595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,022,953 - 85,373,280 (-)NCBI
RefSeq Acc Id: XM_063276526   ⟹   XP_063132596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,022,953 - 85,154,690 (-)NCBI
Ensembl Acc Id: ENSRNOP00000069994   ⟸   ENSRNOT00000082549
Ensembl Acc Id: ENSRNOP00000000158   ⟸   ENSRNOT00000000158
Ensembl Acc Id: ENSRNOP00000068122   ⟸   ENSRNOT00000075983
Ensembl Acc Id: ENSRNOP00000061086   ⟸   ENSRNOT00000068553
RefSeq Acc Id: XP_038951755   ⟸   XM_039095827
- Peptide Label: isoform X6
- UniProtKB: A0A146J2K6 (UniProtKB/TrEMBL),   A6JM82 (UniProtKB/TrEMBL),   A0A8I5ZZ91 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951748   ⟸   XM_039095820
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JWS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951750   ⟸   XM_039095822
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JWS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951753   ⟸   XM_039095825
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001376172   ⟸   NM_001389243
- UniProtKB: A0A0G2JWS2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097039   ⟸   ENSRNOT00000112505
Ensembl Acc Id: ENSRNOP00000091118   ⟸   ENSRNOT00000115953
Ensembl Acc Id: ENSRNOP00000084416   ⟸   ENSRNOT00000098790
Ensembl Acc Id: ENSRNOP00000080969   ⟸   ENSRNOT00000118976
RefSeq Acc Id: XP_063132594   ⟸   XM_063276524
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063132595   ⟸   XM_063276525
- Peptide Label: isoform X7
- UniProtKB: A0A8I6ASI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132592   ⟸   XM_063276522
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063132591   ⟸   XM_063276521
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063132593   ⟸   XM_063276523
- Peptide Label: isoform X4
- UniProtKB: A0A8I6B580 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132596   ⟸   XM_063276526
- Peptide Label: isoform X8
- UniProtKB: A0A0G2JWS2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101527   ⟸   ENSRNOT00000153710
Ensembl Acc Id: ENSRNOP00000103393   ⟸   ENSRNOT00000133444
Ensembl Acc Id: ENSRNOP00000105010   ⟸   ENSRNOT00000167207
Ensembl Acc Id: ENSRNOP00000101610   ⟸   ENSRNOT00000151292
Protein Domains
LIM zinc-binding   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A164-F1-model_v2 AlphaFold D4A164 1-1015 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308315 AgrOrtholog
BioCyc Gene G2FUF-8580 BioCyc
Ensembl Genes ENSRNOG00000049452 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068553.5 UniProtKB/TrEMBL
  ENSRNOT00000082549 ENTREZGENE
  ENSRNOT00000082549.3 UniProtKB/TrEMBL
  ENSRNOT00000112505 ENTREZGENE
  ENSRNOT00000112505.2 UniProtKB/TrEMBL
  ENSRNOT00000115953.2 UniProtKB/TrEMBL
  ENSRNOT00000118976.2 UniProtKB/TrEMBL
  ENSRNOT00000133444 ENTREZGENE
  ENSRNOT00000133444.1 UniProtKB/TrEMBL
  ENSRNOT00000151292.1 UniProtKB/TrEMBL
  ENSRNOT00000153710 ENTREZGENE
  ENSRNOT00000153710.1 UniProtKB/TrEMBL
  ENSRNOT00000167207.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro LIM-SH3_domain_protein UniProtKB/TrEMBL
  NEBU/NEBL UniProtKB/TrEMBL
  Nebulette_SH3 UniProtKB/TrEMBL
  Nebulin_35r-motif UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
NCBI Gene 307189 ENTREZGENE
PANTHER LASP UniProtKB/TrEMBL
  LIM AND SH3 DOMAIN PROTEIN LASP UniProtKB/TrEMBL
  NEBULETTE UniProtKB/TrEMBL
  NEBULIN UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
  Nebulin UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PhenoGen Nebl PhenoGen
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  NEBULIN UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000049452 RatGTEx
SMART LIM UniProtKB/TrEMBL
  NEBU UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A0G2JWS2 ENTREZGENE, UniProtKB/TrEMBL
  A0A146J2K6 ENTREZGENE
  A0A8I5ZQY5_RAT UniProtKB/TrEMBL
  A0A8I5ZZ91 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6APU1_RAT UniProtKB/TrEMBL
  A0A8I6ASI6 ENTREZGENE
  A0A8I6B580 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L2Y5_RAT UniProtKB/TrEMBL
  A0ABK0LHS2_RAT UniProtKB/TrEMBL
  A0ABK0LKW5_RAT UniProtKB/TrEMBL
  A6JM82 ENTREZGENE, UniProtKB/TrEMBL
  D4A164_RAT UniProtKB/TrEMBL
UniProt Secondary A0A146J2K6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nebl  nebulette   Nebl_predicted  nebulette (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nebl_predicted  nebulette (predicted)      Symbol and Name status set to approved 70820 APPROVED