Zc3h11a (zinc finger CCCH-type containing 11A) - Rat Genome Database

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Gene: Zc3h11a (zinc finger CCCH-type containing 11A) Rattus norvegicus
Analyze
Symbol: Zc3h11a (Ensembl: Zbed6)
Name: zinc finger CCCH-type containing 11A (Ensembl:zinc finger, BED-type containing 6)
RGD ID: 1308290
Description: Orthologous to human ZC3H11A (zinc finger CCCH-type containing 11A); INTERACTS WITH 17beta-estradiol; bisphenol A; copper atom.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC360845; LOC360845; RGD1308290; similar to RIKEN cDNA 5730454B08; zinc finger CCCH domain-containing protein 11A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81347,625,444 - 47,665,971 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21345,073,422 - 45,113,901 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,071,718 - 45,114,009 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1347,684,404 - 47,723,216 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01348,972,477 - 49,011,293 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,236,996 - 46,275,850 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01350,196,042 - 50,234,862 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1350,196,042 - 50,234,862 (+)Ensemblrn6Rnor6.0
Rnor_5.01355,250,291 - 55,288,525 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41346,546,434 - 46,585,149 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1345,407,342 - 45,445,945 (-)NCBICelera
RGSC_v3.11346,560,476 - 46,599,192 (-)NCBI
Cytogenetic Map13q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22658674   PMID:22681889   PMID:22928037  


Genomics

Comparative Map Data
Zc3h11a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81347,625,444 - 47,665,971 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21345,073,422 - 45,113,901 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,071,718 - 45,114,009 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1347,684,404 - 47,723,216 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01348,972,477 - 49,011,293 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,236,996 - 46,275,850 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01350,196,042 - 50,234,862 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1350,196,042 - 50,234,862 (+)Ensemblrn6Rnor6.0
Rnor_5.01355,250,291 - 55,288,525 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41346,546,434 - 46,585,149 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1345,407,342 - 45,445,945 (-)NCBICelera
RGSC_v3.11346,560,476 - 46,599,192 (-)NCBI
Cytogenetic Map13q13NCBI
ZC3H11A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,795,623 - 203,854,124 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,795,623 - 203,854,999 (+)Ensemblhg38GRCh38
GRCh371203,764,751 - 203,823,252 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361202,031,374 - 202,089,879 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1176,894,976 - 176,957,901 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,930,259 - 174,989,504 (+)NCBIHuRef
CHM1_11205,188,292 - 205,246,806 (+)NCBICHM1_1
T2T-CHM13v2.01203,058,813 - 203,118,077 (+)NCBIT2T-CHM13v2.0
Zc3h11a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,547,600 - 133,589,137 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,547,600 - 133,589,118 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381133,619,862 - 133,661,399 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,619,862 - 133,661,380 (-)Ensemblmm10GRCm38
GRCm38.p6 Ensembl1133,619,871 - 133,661,380 (-)Ensemblmm10GRCm38
MGSCv371135,516,448 - 135,557,957 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361135,449,041 - 135,482,553 (-)NCBIMGSCv36mm8
Celera1136,233,840 - 136,276,673 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.94NCBI
Zc3h11a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,684,425 - 39,720,454 (+)Ensembl
ChiLan1.0NW_00495540639,678,544 - 39,718,062 (+)NCBIChiLan1.0ChiLan1.0
ZC3H11A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2145,520,945 - 45,580,214 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1145,485,758 - 45,523,607 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01179,399,533 - 179,458,811 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11183,689,698 - 183,747,943 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1183,710,919 - 183,746,214 (+)EnsemblpanPan2panpan1.1
ZC3H11A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138477,900 - 505,754 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha38556,158 - 601,505 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.038456,184 - 501,695 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl38456,182 - 501,692 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.138453,063 - 498,400 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.038843,427 - 888,688 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0381,057,617 - 1,103,068 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zc3h11a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934471,628,681 - 71,652,940 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936567863,196 - 892,686 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936567863,295 - 901,837 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC3H11A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1964,518,895 - 64,554,871 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2970,867,408 - 70,903,386 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZC3H11A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12525,490,837 - 25,548,262 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2525,489,127 - 25,541,281 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605526,265,336 - 26,323,003 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zc3h11a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,096,854 - 7,165,394 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248077,099,539 - 7,165,450 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Zc3h11a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1102,047,572 - 2,072,880 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zc3h11a
347 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:46
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000004025
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134627292251216694Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131244842147969993Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134760142648068645Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
2303032Bp328Blood pressure QTL 328arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134373632747969993Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134599007750392939Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133379409660914504Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13308875548088755Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
BE120749  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21345,112,025 - 45,112,222 (-)MAPPERmRatBN7.2
Rnor_6.01350,197,721 - 50,197,917NCBIRnor6.0
Rnor_5.01355,251,833 - 55,252,029UniSTSRnor5.0
RGSC_v3.41346,583,371 - 46,583,567UniSTSRGSC3.4
Celera1345,444,199 - 45,444,395UniSTS
RH 3.4 Map13173.9UniSTS
Cytogenetic Map13q13UniSTS
RH137294  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001047902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC088342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC111404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC161921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ480752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000090858   ⟹   ENSRNOP00000071151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1347,658,667 - 47,666,004 (-)Ensembl
mRatBN7.2 Ensembl1345,071,862 - 45,113,949 (-)Ensembl
Rnor_6.0 Ensembl1350,196,042 - 50,234,862 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115014   ⟹   ENSRNOP00000089279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1347,658,667 - 47,666,018 (-)Ensembl
mRatBN7.2 Ensembl1345,071,718 - 45,114,009 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000126243   ⟹   ENSRNOP00000111845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1347,658,667 - 47,667,961 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000134100   ⟹   ENSRNOP00000102124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1347,658,667 - 47,668,221 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000137540   ⟹   ENSRNOP00000103153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1347,658,667 - 47,666,178 (-)Ensembl
RefSeq Acc Id: NM_001047902   ⟹   NP_001041367
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,627,096 - 47,665,917 (-)NCBI
mRatBN7.21345,075,077 - 45,113,901 (-)NCBI
Rnor_6.01350,196,042 - 50,234,862 (+)NCBI
Rnor_5.01355,250,291 - 55,288,525 (+)NCBI
RGSC_v3.41346,546,434 - 46,585,149 (-)RGD
Celera1345,407,342 - 45,445,945 (-)RGD
Sequence:
RefSeq Acc Id: XM_039090891   ⟹   XP_038946819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,625,444 - 47,658,807 (-)NCBI
mRatBN7.21345,073,422 - 45,113,277 (-)NCBI
RefSeq Acc Id: XM_039090893   ⟹   XP_038946821
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,625,444 - 47,665,957 (-)NCBI
mRatBN7.21345,074,637 - 45,107,035 (-)NCBI
RefSeq Acc Id: XM_039090895   ⟹   XP_038946823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,625,444 - 47,658,807 (-)NCBI
mRatBN7.21345,073,422 - 45,106,789 (-)NCBI
RefSeq Acc Id: XM_039090896   ⟹   XP_038946824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,625,444 - 47,641,132 (-)NCBI
mRatBN7.21345,073,422 - 45,089,114 (-)NCBI
RefSeq Acc Id: XM_063272465   ⟹   XP_063128535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,625,444 - 47,665,951 (-)NCBI
RefSeq Acc Id: XM_063272466   ⟹   XP_063128536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,625,444 - 47,665,971 (-)NCBI
RefSeq Acc Id: XM_063272467   ⟹   XP_063128537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81347,625,444 - 47,658,807 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001041367 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430555 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430556 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430557 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430558 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430559 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430560 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430561 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430562 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430563 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430564 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430565 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430566 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430567 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430568 (Get FASTA)   NCBI Sequence Viewer  
  NP_001430569 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946819 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946821 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946823 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946824 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128535 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128536 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128537 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI11405 (Get FASTA)   NCBI Sequence Viewer  
  ABG37973 (Get FASTA)   NCBI Sequence Viewer  
  EDM09763 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000104143
  ENSRNOP00000104143.1
RefSeq Acc Id: NP_001041367   ⟸   NM_001047902
- UniProtKB: Q0ZFS5 (UniProtKB/TrEMBL),   A6IC84 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071151   ⟸   ENSRNOT00000090858
RefSeq Acc Id: XP_038946819   ⟸   XM_039090891
- Peptide Label: isoform X1
- UniProtKB: A6IC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946823   ⟸   XM_039090895
- Peptide Label: isoform X3
- UniProtKB: A6IC84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946824   ⟸   XM_039090896
- Peptide Label: isoform X5
- UniProtKB: Q0D2G9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946821   ⟸   XM_039090893
- Peptide Label: isoform X2
- UniProtKB: Q0ZFS5 (UniProtKB/TrEMBL),   A6IC84 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089279   ⟸   ENSRNOT00000115014
RefSeq Acc Id: XP_063128536   ⟸   XM_063272466
- Peptide Label: isoform X2
- UniProtKB: A6IC84 (UniProtKB/TrEMBL),   Q0ZFS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128535   ⟸   XM_063272465
- Peptide Label: isoform X2
- UniProtKB: A6IC84 (UniProtKB/TrEMBL),   Q0ZFS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128537   ⟸   XM_063272467
- Peptide Label: isoform X4
- UniProtKB: A6IC84 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103153   ⟸   ENSRNOT00000137540
Ensembl Acc Id: ENSRNOP00000102124   ⟸   ENSRNOT00000134100
Ensembl Acc Id: ENSRNOP00000111845   ⟸   ENSRNOT00000126243
Protein Domains
Zinc-finger CCCH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q0ZFS5-F1-model_v2 AlphaFold Q0ZFS5 1-793 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698822
Promoter ID:EPDNEW_R9346
Type:initiation region
Name:Zc3h11a_1
Description:zinc finger CCCH-type containing 11A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01350,196,012 - 50,196,072EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308290 AgrOrtholog
BioCyc Gene G2FUF-18279 BioCyc
Ensembl Genes ENSRNOG00000053210 Ensembl
  ENSRNOG00000085640 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000150512 ENTREZGENE
  ENSRNOT00000150512.1 UniProtKB/TrEMBL
Gene3D-CATH Zinc finger, CCCH-type UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7373975 IMAGE-MGC_LOAD
InterPro Znf-CCCH_3 UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
KEGG Report rno:360845 UniProtKB/TrEMBL
MGC_CLONE MGC:125178 IMAGE-MGC_LOAD
NCBI Gene 360845 ENTREZGENE
PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 11A UniProtKB/TrEMBL
  ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING UniProtKB/TrEMBL
Pfam zf-CCCH_3 UniProtKB/TrEMBL
PhenoGen Zc3h11a PhenoGen
PROSITE ZF_C3H1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000053210 RatGTEx
  ENSRNOG00000085640 RatGTEx
SMART ZnF_C3H1 UniProtKB/TrEMBL
UniProt A0ABK0LL44_RAT UniProtKB/TrEMBL
  A6IC84 ENTREZGENE, UniProtKB/TrEMBL
  Q0D2G9 ENTREZGENE, UniProtKB/TrEMBL
  Q0ZFS5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Zc3h11a  zinc finger CCCH-type containing 11A  RGD1308290  similar to RIKEN cDNA 5730454B08  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1308290  similar to RIKEN cDNA 5730454B08   RGD1308290_predicted  similar to RIKEN cDNA 5730454B08 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1308290_predicted  similar to RIKEN cDNA 5730454B08 (predicted)  LOC360845_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC360845_predicted  similar to RIKEN cDNA 5730454B08 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL