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Gene: Rad9b (RAD9 checkpoint clamp component B) Rattus norvegicus

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Symbol:

Rad9b

Name:

RAD9 checkpoint clamp component B

RGD ID:

1308223

Description:

Predicted to be involved in DNA integrity checkpoint signaling; DNA repair; and cellular response to ionizing radiation. Predicted to be located in nucleus. Predicted to be part of checkpoint clamp complex. Orthologous to human RAD9B (RAD9 checkpoint clamp component B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cell cycle checkpoint control protein RAD9B; cell cycle checkpoint control protein RAD9B homolog; DNA repair exonuclease rad9 homolog B; LOC363924; MGC124758; RAD9 homolog B (S. cerevisiae); RAD9 homolog B (S. pombe)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAD9B (RAD9 checkpoint clamp component B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rad9b (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rad9b (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAD9B (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAD9B (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rad9b (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAD9B (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAD9B (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rad9b (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rad9b (RAD9 checkpoint clamp component B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TMEM248 (transmembrane protein 248)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RAD9B (RAD9 checkpoint clamp component B)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rad9b (RAD9 checkpoint clamp component B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rad9b (RAD9 checkpoint clamp component B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	hpr-9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hpr-9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rad9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rad9	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rad9b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rad9b	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	39,878,221 - 39,909,254 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	39,878,445 - 39,909,143 (+)	Ensembl				GRCr8
mRatBN7.2	12	34,217,868 - 34,248,380 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	34,218,024 - 34,248,372 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	35,390,430 - 35,420,766 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	36,001,842 - 36,032,012 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	35,054,164 - 35,084,482 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	39,699,076 - 39,731,218 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	39,699,181 - 39,729,516 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	41,579,810 - 41,613,266 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	35,412,463 - 35,443,713 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	35,888,883 - 35,919,190 (+)	NCBI		Celera
RGSC_v3.1	12	35,275,850 - 35,306,721 (+)	NCBI
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

neural tube defect (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(1->4)-beta-D-glucan (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

choline (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

L-methionine (ISO)

Licochalcone B (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone (EXP)

trichloroethene (EXP)

triphenyl phosphate (EXP)

Triptolide (ISO)

triptonide (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to ionizing radiation (IBA)

DNA damage checkpoint signaling (IEA)

DNA repair (IBA,IEA)

DNA replication checkpoint signaling (IBA)

mitotic intra-S DNA damage checkpoint signaling (IBA)

Cellular Component

checkpoint clamp complex (IBA,IEA)

nucleus (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14500360	PMID:15489334	PMID:37460044

Genomics

Comparative Map Data

Rad9b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	39,878,221 - 39,909,254 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	39,878,445 - 39,909,143 (+)	Ensembl				GRCr8
mRatBN7.2	12	34,217,868 - 34,248,380 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	34,218,024 - 34,248,372 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	35,390,430 - 35,420,766 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	36,001,842 - 36,032,012 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	35,054,164 - 35,084,482 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	39,699,076 - 39,731,218 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	39,699,181 - 39,729,516 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	41,579,810 - 41,613,266 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	35,412,463 - 35,443,713 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	35,888,883 - 35,919,190 (+)	NCBI		Celera
RGSC_v3.1	12	35,275,850 - 35,306,721 (+)	NCBI
Cytogenetic Map	12	q16	NCBI

RAD9B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	110,502,331 - 110,533,556 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	110,501,655 - 110,533,556 (+)	Ensembl			hg38	GRCh38
GRCh37	12	110,940,136 - 110,971,361 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	109,424,483 - 109,454,274 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	109,402,819 - 109,432,609	NCBI
Celera	12	110,566,764 - 110,596,591 (+)	NCBI		Celera
Cytogenetic Map	12	q24.11	NCBI
HuRef	12	107,958,134 - 107,988,078 (+)	NCBI		HuRef
CHM1_1	12	110,907,815 - 110,937,557 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	110,480,028 - 110,511,250 (+)	NCBI		T2T-CHM13v2.0

Rad9b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	122,461,286 - 122,492,297 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	122,461,286 - 122,492,296 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	122,323,223 - 122,354,270 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	122,323,223 - 122,354,233 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	122,775,517 - 122,804,204 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	122,586,125 - 122,614,812 (-)	NCBI		MGSCv36	mm8
Celera	5	119,407,984 - 119,436,658 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	62.3	NCBI

Rad9b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	7,405,608 - 7,440,995 (+)	Ensembl
ChiLan1.0	NW_004955482	7,405,520 - 7,459,240 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAD9B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	118,562,938 - 118,594,454 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	118,559,388 - 118,590,857 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	108,072,061 - 108,103,338 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	111,467,881 - 111,497,803 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	111,467,845 - 111,498,350 (+)	Ensembl			panPan2	panpan1.1

RAD9B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	8,309,384 - 8,333,414 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	8,309,592 - 8,343,424 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	8,473,060 - 8,496,997 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	8,567,351 - 8,591,512 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	26	8,526,316 - 8,550,455 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	8,585,107 - 8,609,239 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	8,540,581 - 8,564,740 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rad9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	155,989,042 - 156,020,345 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	3,459,223 - 3,489,413 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	3,462,187 - 3,489,741 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAD9B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	31,869,684 - 31,903,823 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	31,869,570 - 31,903,485 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	33,791,210 - 33,825,462 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAD9B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	105,738,247 - 105,772,539 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	105,738,867 - 105,772,002 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	139,342,617 - 139,381,505 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rad9b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	21,360,240 - 21,399,075 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	21,360,253 - 21,399,223 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rad9b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	31,494,904 - 31,524,365 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rad9b
235 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	52
Count of miRNA genes:	45
Interacting mature miRNAs:	48
Transcripts:	ENSRNOT00000048454
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37764145	51558799	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	34243475	43352593	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

AW529993

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	34,248,179 - 34,248,329 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	39,729,324 - 39,729,473	NCBI	Rnor6.0
Rnor_5.0	12	41,610,351 - 41,610,500	UniSTS	Rnor5.0
RGSC_v3.4	12	35,443,519 - 35,443,668	UniSTS	RGSC3.4
Celera	12	35,918,996 - 35,919,145	UniSTS
RH 3.4 Map	12	597.8	UniSTS
Cytogenetic Map	12	q16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	91	59	6	354	191	11	141	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001030042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC104314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000048454 ⟹ ENSRNOP00000042520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	39,878,717 - 39,909,143 (+)	Ensembl
mRatBN7.2 Ensembl	12	34,218,024 - 34,248,372 (+)	Ensembl
Rnor_6.0 Ensembl	12	39,699,181 - 39,729,516 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094134 ⟹ ENSRNOP00000091157

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	39,880,250 - 39,909,143 (+)	Ensembl
mRatBN7.2 Ensembl	12	34,219,474 - 34,248,372 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119588 ⟹ ENSRNOP00000092302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	39,878,445 - 39,909,143 (+)	Ensembl
mRatBN7.2 Ensembl	12	34,218,633 - 34,248,372 (+)	Ensembl

RefSeq Acc Id:

NM_001030042 ⟹ NP_001025213

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,800 - 39,909,141 (+)	NCBI
mRatBN7.2	12	34,218,024 - 34,248,376 (+)	NCBI
Rnor_6.0	12	39,699,181 - 39,729,518 (+)	NCBI
Rnor_5.0	12	41,579,810 - 41,613,266 (+)	NCBI
RGSC_v3.4	12	35,412,463 - 35,443,713 (+)	RGD
Celera	12	35,888,883 - 35,919,190 (+)	RGD

Sequence:

show sequence

GAGAAAAAAAAACGGTGCTGCGAGAAATTCCTCGCGGGTGGGGCAAGGTAGAAGCGGAGCGGGC
GGAAAGTGAGAGCAACATCCGGGCACCTGCGTCTGGAGCGCTTCTGCCCGCCATGCCTCCTTTT
CCCGTAGCCATGCTGAAGTGTGGGATGACGGGCGGTCAGGTGAAAGTGTTTGGGAAAGCAATTC
AAACTCTATCACGAGTGAGCGATGAACTGTGGCTAGACCCGTCTGAAAAAGGTCTTGCTCTGAG
ATCTGTGAATTCTTGTCATTCCACATATGGCTACGTCCTGTTCTCGTCTGTGTTTTTTCAACAT
TATCAATGGTCCCCCTCAGCCACGATAACAGACAGTGACATACCACTGAATTTAAATTGCAAAC
TGGCAATAAAGTCAATCCTGCCAATCTTTAGATGTCTGAATTACCTTGAAAGAAGCATAGAGAA
GTGTACAATGGTCGCCAGATCGGACAGATGCAGAGTCGTCATCCAGTTCTTCGGCAGGCATGGT
ATTAAAAGAACTCACAATGTGTATTTCCAAGACTGCCAGCCCTTGAAAATTCTCTTTGAAAAGA
GCTTGTGTGCGAACATCCTGATGATTAAACCAAGACTGCTGGCTGAGGCCATTGCTCTTCTAAC
ATCGAATCAAGAGGAAGTCACCTTCTCCGTTACCCCAGAGAATTTCTGCCTCAAGAGCTCGAGT
GGGGAATCACTGGATTTAACCAGCTCTGTGTACAGTGAGATGTCTTTTGGCCCGGAAGAGTTTG
ACTTCTTTCAGGTTGGACTTGATACCGAGATAACCTTTTGCTTTAAAGAACTGAAGGGGATCCT
CACCTTCTCAGAAGTGATGCACGCACCCATTGCCATCTACTTTGACTTTCCTGGAAAACCAGTT
GTTCTGAGTGTGGAAGACATGCTCTTGGAGGCGAGCTTTATCCTGGCCACCTTATTGGACTATC
CAAGTAGAACATCTTCACCACAGTCACTGCGCCTTTCCCAGGCACGAAGGTCAGACCCCACACT
GTCCGGTGCTCAGGAGGGTAAAAGCCGAGTCAGCCAGACCCCAGAGAGCATCTCTCGAGCAGCG
CCCAAAAGGCTGTTTCCCAAGGATCCTCCTGACAGCAGCTCTGCAGCAGAGACCAGGAGAGCCA
GCGCCAGCCAGGATGACATCTCCGAGGTGCCTGAGAGTGTTGTCAGTGATATGGAGGAAGGGCA
AAGTCCCTCACCCCTCAGAAAGTTTTCCTGCATGTTCTTTGGAGCAGTATCTTGTGAACAGCAA
GAGCATGCCAACCACCCCTTGGGCAGTCTGGCAGTAGCAAGCGACAGTGAACAGGACGCGAGTG
GATGAACGTCCACGCTAAGGCTGTAATAGCCACACCGGGCGCTTGGCTCCCTGAAGGCCAAGGG
GAAACTGAGCAAACTGTCCCAGGATGCCCTGGAGACAGTGTCTCTGCTCTTGCCAGGATCACTG
TGCACTAAAATCTGTGTCACTTGGGGGACAGAGCTGGCCGCACAAGGATGAGCCATCGGGGTTA
GATGCCACTGTTTAACCCTGCAGCCTTGGCATGTCCCCTGTGGATCCCTAAGGCAGACTTCCCT
CAGCATCTGGGTGAGGTGGAGCTTCTGTACCTGACAGCAGCCTTCCAGCTTATGTGAGACCTGA
CAGGCTTTGTTCAGTGTTGTTTTTCAGAGTAGAGAAAAGGTGGTGAATAAAAGACATACAGTTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008769241 ⟹ XP_008767463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,823 - 39,909,144 (+)	NCBI
mRatBN7.2	12	34,218,030 - 34,248,380 (+)	NCBI
Rnor_6.0	12	39,699,167 - 39,731,218 (+)	NCBI

Sequence:

show sequence

GTCTTTCCCCGTCAGAGAAAAAAAAACGGTGCTGCGAGAAATTCCTCGCGGGTGGGGCAAGGTA
GAAGCGGAGCGGGCGGAAAGTGAGAGCAACATCCGGGCACCTGCGTCTGGAGCGCTTCTGCCCG
CCATGCCTCCTTTTCCCGTAGCCATGCTGAAGTGTGGGATGACGGGCGGTCAGGTGAAAGTGTT
TGGGAAAGCAATTCAAACTCTATCACGAGTGAGCGATGAACTGTGGCTAGACCCGTCTGAAAAA
GGTCTTGCTCTGAGATCTGTGAATTCTTGTCATTCCACATATGGCTACGTCCTGTTCTCGTCTG
TGTTTTTTCAACATTATCAATGGTCCCCCTCAGCCACGATAACAGACAGTGACATACCACTGAA
TTTAAATTGCAAACTGGCAATAAAGTCAATCCTGCCAATCTTTAGATGTCTGAATTACCTTGAA
AGAAGCATAGAGAAGTGTACAATGGTCGCCAGATCGGACAGATGCAGAGTCGTCATCCAGTTCT
TCGGCAGGCATGGTATTAAAAGAACTCACAATGTGTATTTCCAAGACTGCCAGCCCTTGAAAAT
TCTCTTTGAAAAGAGCTTGTGTGCGAACATCCTGATGATTAAACCAAGACTGCTGGCTGAGGCC
ATTGCTCTTCTAACATCGAATCAAGAGGAAGTCACCTTCTCCGTTACCCCAGAGAATTTCTGCC
TCAAGAGCTCGAGTGGGGAATCACTGGATTTAACCAGCTCTGTGTACAGTGAGATGTCTTTTGG
CCCGGAAGAGTTTGACTTCTTTCAGGTTGGACTTGATACCGAGATAACCTTTTGCTTTAAAGAA
CTGAAGGGGATCCTCACCTTCTCAGAAGTGATGCACGCACCCATTGCCATCTACTTTGACTTTC
CTGGAAAGTCAGACCCCACACTGTCCGGTGCTCAGGAGGGTAAAAGCCGAGTCAGCCAGACCCC
AGAGAGCATCTCTCGAGCAGCGCCCAAAAGGCTGTTTCCCAAGGATCCTCCTGACAGCAGCTCT
GCAGCAGAGACCAGGAGAGCCAGCGCCAGCCAGGATGACATCTCCGAGGTGCCTGAGAGTGTTG
TCAGTGATATGGAGGAAGGGCAAAGTCCCTCACCCCTCAGAAAGTTTTCCTGCATGTTCTTTGG
AGCAGTATCTTGTGAACAGCAAGAGCATGCCAACCACCCCTTGGGCAGTCTGGCAGTAGCAAGC
GACAGTGAACAGGACGCGAGTGGATGAACGTCCACGCTAAGGCTGTAATAGCCACACCGGGCGC
TTGGCTCCCTGAAGGCCAAGGGGAAACTGAGCAAACTGTCCCAGGATGCCCTGGAGACAGTGTC
TCTGCTCTTGCCAGGATCACTGTGCACTAAAATCTGTGTCACTTGGGGGACAGAGCTGGCCGCA
CAAGGATGAGCCATCGGGGTTAGATGCCACTGTTTAACCCTGCAGCCTTGGCATGTCCCCTGTG
GATCCCTAAGGCAGACTTCCCTCAGCATCTGGGTGAGGTGGAGCTTCTGTACCTGACAGCAGCC
TTCCAGCTTATGTGAGACCTGACAGGCTTTGTTCAGTGTTGTTTTTCAGAGTAGAGAAAAGGTG
GTGAATAAAAGACATACAGTTAACTTCACTTTGTGGTCATTTTATATATTACACGATTTTATTT
CCTGGCCCTCAGCTGCTCTGGTTCCTGTCTGCTATGCAGTGGGATGCAGAGAGCATGCAGTGAA
GTCGGTATGAGTCACCGGCACACACAGCGGCCGCTGAGCTCAGCCTGGAGTGGAACAAGGTAAG
GGGGCAGAGGACAAATGCCTGTCCACTGCTCCTCTCAGGTCTAGCTGCTTACATGCACAGATTA
AAAACCTGGCACAAAACACACTGATGTAACTTATTATGCTGTAGGACTCTCTCCCAAACCAGTG
TACAGTGGTTGCAGGCTACAGGAGTCTTTGGAACATCTTATTGCTAAGTCCTTGGAAACCATCA
GACCGTAAGGAAATGTCAAGCAGCAGGCCAGCCACCGTACTTCACACTCAGCGTTGCCTACGTG
GATCAGATGCTGCAGACGTGTGAGCAGAGTTCTAGCTGAAACAGTGACTGGGTTCTTGTAGCTT
AGCAATGACTCACAGCTGCCCACAGTAACCTAATAAAAACCCAACTTCACCAACTTCATCCCAA
AATGTCCCTCTGTGAATGAAAATGGGCTTTCAAGAAGCTTTTTGTGGAAACTGGCAGTGCCCAC
CTATCTCAGCCTTGTCCTCTGTTGTAGGCTGAAGATTTATGAATCTCATGTTTACACTGATCAC
TGGATTGCAGACATTTCTGCCCAGCACACATGGCTGCAGAGCAGCTGTGGGTCTCCTGCTGAGA
ACGGCCTGGGCTCACCCTGATGCAGCTTCCCAAGCACCTTGGCCAGCGCAGCCTGGCTACAGCA
CTAATCTGCACAAGACGGTGACACTGTGACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGCTCATGTGATGGAATCTAGGCCCTTGCACATCCCAGGTCAGTGC
TCTGCTACAGAGCTCCCCACCCCTCACAGCGGCCTTTCTGGTGGCTCCGTCACTCAGTACTGTC
TGGAAGGACACTGATGGCTCCAGCTGTAAACTCTCTGTTTTACACTCAACTGTCGTCCATTTTG
GTGAACTTCTGAGGAAGATAAGGAGCTGCTGATGACAGGCCACGCTGCTCTGGCTCAGATGGTA
AAGCACGAAGGACACGGCTCTGTGGTGCTGGCTCACTGTCAGGTAGACCAAGAAGCTTGGAGTT
GGGATGTGACGGAGACAATCTGAGCGTCGGTGCTTTAGCCCCTGACCGTTCACACCAAAGGAGT
GGCACGTAGTATAAATACTGTATTTATTAAATATCCTTACAGTTTATTTAAATGTATTTACAGA
ACTATTCCTGCATAAGTTATATTTCAGACATCGATCAGGTCATTGCCTCTGGTAGGACAAACAA
TGATAGTCTCGACAGAACACGCAGCTCATTAGCACAGACTCAGATTTGCTCGTCGTTACTATCT
TTGCCACCAACTTCCTGCTAACAGTCACGTTTTGACATGGTCACTGCTCTATTGAGAAGTTCAA
TTTTGTGATAATTTACTTTTTTCAAAGAAATAGAATCCAAATTCTTGTTTCATATTTTGTTTTA
TAAGCAGATTTTTGCAAATTTTTTTAAATGTAAAACTGTGACAGTCTCCAGAGAAACTGAGTGT
TACAACTTGGCCAGAGAGAGCTGCTGTACAGTGACAAGAAGCCATGAACCTACTCTAAA

hide sequence

RefSeq Acc Id:

XM_008769244 ⟹ XP_008767466

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,846 - 39,909,144 (+)	NCBI
mRatBN7.2	12	34,218,116 - 34,248,380 (+)	NCBI
Rnor_6.0	12	39,699,268 - 39,731,218 (+)	NCBI

Sequence:

show sequence

CACCTGCGTCTGGAGCGCTTCTGCCCGCCATGCCTCCTTTTCCCGTAGCCATGCTGAAGTGTGG
GATGACGGGCGGTCAGTGTTTGGGAAAGCAATTCAAACTCTATCACGAGTGAGCGATGAACTGT
GGCTAGACCCGTCTGAAAAAGGTCTTGCTCTGAGATCTGTGAATTCTTGTCATTCCACATATGG
CTACGTCCTGTTCTCGTCTGTGTTTTTTCAACATTATCAATGGTCCCCCTCAGCCACGATAACA
GACAGTGACATACCACTGAATTTAAATTGCAAACTGGCAATAAAGTCAATCCTGCCAATCTTTA
GATGTCTGAATTACCTTGAAAGAAGCATAGAGAAGTGTACAATGGTCGCCAGATCGGACAGATG
CAGAGTCGTCATCCAGTTCTTCGGCAGGCATGGTATTAAAAGAACTCACAATGTGTATTTCCAA
GACTGCCAGCCCTTGAAAATTCTCTTTGAAAAGAGCTTGTGTGCGAACATCCTGATGATTAAAC
CAAGACTGCTGGCTGAGGCCATTGCTCTTCTAACATCGAATCAAGAGGAAGTCACCTTCTCCGT
TACCCCAGAGAATTTCTGCCTCAAGAGCTCGAGTGGGGAATCACTGGATTTAACCAGCTCTGTG
TACAGTGAGATGTCTTTTGGCCCGGAAGAGTTTGACTTCTTTCAGGTTGGACTTGATACCGAGA
TAACCTTTTGCTTTAAAGAACTGAAGGGGATCCTCACCTTCTCAGAAGTGATGCACGCACCCAT
TGCCATCTACTTTGACTTTCCTGGAAAACCAGTTGTTCTGAGTGTGGAAGACATGCTCTTGGAG
GCGAGCTTTATCCTGGCCACCTTATTGGACTATCCAAGTAGAACATCTTCACCACAGTCACTGC
GCCTTTCCCAGGCACGAAGGTCAGACCCCACACTGTCCGGTGCTCAGGAGGGTAAAAGCCGAGT
CAGCCAGACCCCAGAGAGCATCTCTCGAGCAGCGCCCAAAAGGCTGTTTCCCAAGGATCCTCCT
GACAGCAGCTCTGCAGCAGAGACCAGGAGAGCCAGCGCCAGCCAGGATGACATCTCCGAGGTGC
CTGAGAGTGTTGTCAGTGATATGGAGGAAGGGCAAAGTCCCTCACCCCTCAGAAAGTTTTCCTG
CATGTTCTTTGGAGCAGTATCTTGTGAACAGCAAGAGCATGCCAACCACCCCTTGGGCAGTCTG
GCAGTAGCAAGCGACAGTGAACAGGACGCGAGTGGATGAACGTCCACGCTAAGGCTGTAATAGC
CACACCGGGCGCTTGGCTCCCTGAAGGCCAAGGGGAAACTGAGCAAACTGTCCCAGGATGCCCT
GGAGACAGTGTCTCTGCTCTTGCCAGGATCACTGTGCACTAAAATCTGTGTCACTTGGGGGACA
GAGCTGGCCGCACAAGGATGAGCCATCGGGGTTAGATGCCACTGTTTAACCCTGCAGCCTTGGC
ATGTCCCCTGTGGATCCCTAAGGCAGACTTCCCTCAGCATCTGGGTGAGGTGGAGCTTCTGTAC
CTGACAGCAGCCTTCCAGCTTATGTGAGACCTGACAGGCTTTGTTCAGTGTTGTTTTTCAGAGT
AGAGAAAAGGTGGTGAATAAAAGACATACAGTTAACTTCACTTTGTGGTCATTTTATATATTAC
ACGATTTTATTTCCTGGCCCTCAGCTGCTCTGGTTCCTGTCTGCTATGCAGTGGGATGCAGAGA
GCATGCAGTGAAGTCGGTATGAGTCACCGGCACACACAGCGGCCGCTGAGCTCAGCCTGGAGTG
GAACAAGGTAAGGGGGCAGAGGACAAATGCCTGTCCACTGCTCCTCTCAGGTCTAGCTGCTTAC
ATGCACAGATTAAAAACCTGGCACAAAACACACTGATGTAACTTATTATGCTGTAGGACTCTCT
CCCAAACCAGTGTACAGTGGTTGCAGGCTACAGGAGTCTTTGGAACATCTTATTGCTAAGTCCT
TGGAAACCATCAGACCGTAAGGAAATGTCAAGCAGCAGGCCAGCCACCGTACTTCACACTCAGC
GTTGCCTACGTGGATCAGATGCTGCAGACGTGTGAGCAGAGTTCTAGCTGAAACAGTGACTGGG
TTCTTGTAGCTTAGCAATGACTCACAGCTGCCCACAGTAACCTAATAAAAACCCAACTTCACCA
ACTTCATCCCAAAATGTCCCTCTGTGAATGAAAATGGGCTTTCAAGAAGCTTTTTGTGGAAACT
GGCAGTGCCCACCTATCTCAGCCTTGTCCTCTGTTGTAGGCTGAAGATTTATGAATCTCATGTT
TACACTGATCACTGGATTGCAGACATTTCTGCCCAGCACACATGGCTGCAGAGCAGCTGTGGGT
CTCCTGCTGAGAACGGCCTGGGCTCACCCTGATGCAGCTTCCCAAGCACCTTGGCCAGCGCAGC
CTGGCTACAGCACTAATCTGCACAAGACGGTGACACTGTGACACTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCATGTGATGGAATCTAGGCCCTTGCACATC
CCAGGTCAGTGCTCTGCTACAGAGCTCCCCACCCCTCACAGCGGCCTTTCTGGTGGCTCCGTCA
CTCAGTACTGTCTGGAAGGACACTGATGGCTCCAGCTGTAAACTCTCTGTTTTACACTCAACTG
TCGTCCATTTTGGTGAACTTCTGAGGAAGATAAGGAGCTGCTGATGACAGGCCACGCTGCTCTG
GCTCAGATGGTAAAGCACGAAGGACACGGCTCTGTGGTGCTGGCTCACTGTCAGGTAGACCAAG
AAGCTTGGAGTTGGGATGTGACGGAGACAATCTGAGCGTCGGTGCTTTAGCCCCTGACCGTTCA
CACCAAAGGAGTGGCACGTAGTATAAATACTGTATTTATTAAATATCCTTACAGTTTATTTAAA
TGTATTTACAGAACTATTCCTGCATAAGTTATATTTCAGACATCGATCAGGTCATTGCCTCTGG
TAGGACAAACAATGATAGTCTCGACAGAACACGCAGCTCATTAGCACAGACTCAGATTTGCTCG
TCGTTACTATCTTTGCCACCAACTTCCTGCTAACAGTCACGTTTTGACATGGTCACTGCTCTAT
TGAGAAGTTCAATTTTGTGATAATTTACTTTTTTCAAAGAAATAGAATCCAAATTCTTGTTTCA
TATTTTGTTTTATAAGCAGATTTTTGCAAATTTTTTTAAATGTAAAACTGTGACAGTCTCCAGA
GAAACTGAGTGTTACAACTTGGCCAGAGAGAGCTGCTGTACAGTGACAAGAAGCCATGAACCTA
CTCTAAA

hide sequence

RefSeq Acc Id:

XM_017598412 ⟹ XP_017453901

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,665 - 39,909,144 (+)	NCBI
mRatBN7.2	12	34,217,868 - 34,248,380 (+)	NCBI
Rnor_6.0	12	39,699,076 - 39,731,218 (+)	NCBI

Sequence:

show sequence

CTTCCTCAGGCACCTCGCTGACCCGCCCACTTCTTCCGCCACCAATGAGACGACGAGTTTGCGA
GAGACTGTCCTACGGCGGCCCTGTTTGGGAAAGCAATTCAAACTCTATCACGAGTGAGCGATGA
ACTGTGGCTAGACCCGTCTGAAAAAGGTGTAACTTGCTCTGAGATCTGTGAATTCTTGTCATTC
CACATATGGCTACGTCCTGTTCTCGTCTGTGTTTTTTCAACATTATCAATGGTCCCCCTCAGCC
ACGATAACAGACAGTGACATACCACTGAATTTAAATTGCAAACTGGCAATAAAGTCAATCCTGC
CAATCTTTAGATGTCTGAATTACCTTGAAAGAAGCATAGAGAAGTGTACAATGGTCGCCAGATC
GGACAGATGCAGAGTCGTCATCCAGTTCTTCGGCAGGCATGGTATTAAAAGAACTCACAATGTG
TATTTCCAAGACTGCCAGCCCTTGAAAATTCTCTTTGAAAAGAGCTTGTGTGCGAACATCCTGA
TGATTAAACCAAGACTGCTGGCTGAGGCCATTGCTCTTCTAACATCGAATCAAGAGGAAGTCAC
CTTCTCCGTTACCCCAGAGAATTTCTGCCTCAAGAGCTCGAGTGGGGAATCACTGGATTTAACC
AGCTCTGTGTACAGTGAGATGTCTTTTGGCCCGGAAGAGTTTGACTTCTTTCAGGTTGGACTTG
ATACCGAGATAACCTTTTGCTTTAAAGAACTGAAGGGGATCCTCACCTTCTCAGAAGTGATGCA
CGCACCCATTGCCATCTACTTTGACTTTCCTGGAAAACCAGTTGTTCTGAGTGTGGAAGACATG
CTCTTGGAGGCGAGCTTTATCCTGGCCACCTTATTGGACTATCCAAGTAGAACATCTTCACCAC
AGTCACTGCGCCTTTCCCAGGCACGAAGGTCAGACCCCACACTGTCCGGTGCTCAGGAGGGTAA
AAGCCGAGTCAGCCAGACCCCAGAGAGCATCTCTCGAGCAGCGCCCAAAAGGCTGTTTCCCAAG
GATCCTCCTGACAGCAGCTCTGCAGCAGAGACCAGGAGAGCCAGCGCCAGCCAGGATGACATCT
CCGAGGTGCCTGAGAGTGTTGTCAGTGATATGGAGGAAGGGCAAAGTCCCTCACCCCTCAGAAA
GTTTTCCTGCATGTTCTTTGGAGCAGTATCTTGTGAACAGCAAGAGCATGCCAACCACCCCTTG
GGCAGTCTGGCAGTAGCAAGCGACAGTGAACAGGACGCGAGTGGATGAACGTCCACGCTAAGGC
TGTAATAGCCACACCGGGCGCTTGGCTCCCTGAAGGCCAAGGGGAAACTGAGCAAACTGTCCCA
GGATGCCCTGGAGACAGTGTCTCTGCTCTTGCCAGGATCACTGTGCACTAAAATCTGTGTCACT
TGGGGGACAGAGCTGGCCGCACAAGGATGAGCCATCGGGGTTAGATGCCACTGTTTAACCCTGC
AGCCTTGGCATGTCCCCTGTGGATCCCTAAGGCAGACTTCCCTCAGCATCTGGGTGAGGTGGAG
CTTCTGTACCTGACAGCAGCCTTCCAGCTTATGTGAGACCTGACAGGCTTTGTTCAGTGTTGTT
TTTCAGAGTAGAGAAAAGGTGGTGAATAAAAGACATACAGTTAACTTCACTTTGTGGTCATTTT
ATATATTACACGATTTTATTTCCTGGCCCTCAGCTGCTCTGGTTCCTGTCTGCTATGCAGTGGG
ATGCAGAGAGCATGCAGTGAAGTCGGTATGAGTCACCGGCACACACAGCGGCCGCTGAGCTCAG
CCTGGAGTGGAACAAGGTAAGGGGGCAGAGGACAAATGCCTGTCCACTGCTCCTCTCAGGTCTA
GCTGCTTACATGCACAGATTAAAAACCTGGCACAAAACACACTGATGTAACTTATTATGCTGTA
GGACTCTCTCCCAAACCAGTGTACAGTGGTTGCAGGCTACAGGAGTCTTTGGAACATCTTATTG
CTAAGTCCTTGGAAACCATCAGACCGTAAGGAAATGTCAAGCAGCAGGCCAGCCACCGTACTTC
ACACTCAGCGTTGCCTACGTGGATCAGATGCTGCAGACGTGTGAGCAGAGTTCTAGCTGAAACA
GTGACTGGGTTCTTGTAGCTTAGCAATGACTCACAGCTGCCCACAGTAACCTAATAAAAACCCA
ACTTCACCAACTTCATCCCAAAATGTCCCTCTGTGAATGAAAATGGGCTTTCAAGAAGCTTTTT
GTGGAAACTGGCAGTGCCCACCTATCTCAGCCTTGTCCTCTGTTGTAGGCTGAAGATTTATGAA
TCTCATGTTTACACTGATCACTGGATTGCAGACATTTCTGCCCAGCACACATGGCTGCAGAGCA
GCTGTGGGTCTCCTGCTGAGAACGGCCTGGGCTCACCCTGATGCAGCTTCCCAAGCACCTTGGC
CAGCGCAGCCTGGCTACAGCACTAATCTGCACAAGACGGTGACACTGTGACACTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCATGTGATGGAATCTAGGCCC
TTGCACATCCCAGGTCAGTGCTCTGCTACAGAGCTCCCCACCCCTCACAGCGGCCTTTCTGGTG
GCTCCGTCACTCAGTACTGTCTGGAAGGACACTGATGGCTCCAGCTGTAAACTCTCTGTTTTAC
ACTCAACTGTCGTCCATTTTGGTGAACTTCTGAGGAAGATAAGGAGCTGCTGATGACAGGCCAC
GCTGCTCTGGCTCAGATGGTAAAGCACGAAGGACACGGCTCTGTGGTGCTGGCTCACTGTCAGG
TAGACCAAGAAGCTTGGAGTTGGGATGTGACGGAGACAATCTGAGCGTCGGTGCTTTAGCCCCT
GACCGTTCACACCAAAGGAGTGGCACGTAGTATAAATACTGTATTTATTAAATATCCTTACAGT
TTATTTAAATGTATTTACAGAACTATTCCTGCATAAGTTATATTTCAGACATCGATCAGGTCAT
TGCCTCTGGTAGGACAAACAATGATAGTCTCGACAGAACACGCAGCTCATTAGCACAGACTCAG
ATTTGCTCGTCGTTACTATCTTTGCCACCAACTTCCTGCTAACAGTCACGTTTTGACATGGTCA
CTGCTCTATTGAGAAGTTCAATTTTGTGATAATTTACTTTTTTCAAAGAAATAGAATCCAAATT
CTTGTTTCATATTTTGTTTTATAAGCAGATTTTTGCAAATTTTTTTAAATGTAAAACTGTGACA
GTCTCCAGAGAAACTGAGTGTTACAACTTGGCCAGAGAGAGCTGCTGTACAGTGACAAGAAGCC
ATGAACCTACTCTAAA

hide sequence

RefSeq Acc Id:

XM_017598413 ⟹ XP_017453902

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,839 - 39,909,144 (+)	NCBI
mRatBN7.2	12	34,218,063 - 34,248,380 (+)	NCBI
Rnor_6.0	12	39,699,167 - 39,731,218 (+)	NCBI

Sequence:

show sequence

GTCTTTCCCCGTCAGAGAAAAAAAAACGGTGCTGCGAGAAATTCCTCGCGGGTGGGGCAAGGTA
GAAGCGGAGCGGGCGGAAAGTGAGAGCAACATCCGGGCACCTGCGTCTGGAGCGCTTCTGCCCG
CCATGCCTCCTTTTCCCGTAGCCATGCTGAAGTGTGGGATGACGGGCGGTCAGGTGAAAGCTTG
CTCTGAGATCTGTGAATTCTTGTCATTCCACATATGGCTACGTCCTGTTCTCGTCTGTGTTTTT
TCAACATTATCAATGGTCCCCCTCAGCCACGATAACAGACAGTGACATACCACTGAATTTAAAT
TGCAAACTGGCAATAAAGTCAATCCTGCCAATCTTTAGATGTCTGAATTACCTTGAAAGAAGCA
TAGAGAAGTGTACAATGGTCGCCAGATCGGACAGATGCAGAGTCGTCATCCAGTTCTTCGGCAG
GCATGGTATTAAAAGAACTCACAATGTGTATTTCCAAGACTGCCAGCCCTTGAAAATTCTCTTT
GAAAAGAGCTTGTGTGCGAACATCCTGATGATTAAACCAAGACTGCTGGCTGAGGCCATTGCTC
TTCTAACATCGAATCAAGAGGAAGTCACCTTCTCCGTTACCCCAGAGAATTTCTGCCTCAAGAG
CTCGAGTGGGGAATCACTGGATTTAACCAGCTCTGTGTACAGTGAGATGTCTTTTGGCCCGGAA
GAGTTTGACTTCTTTCAGGTTGGACTTGATACCGAGATAACCTTTTGCTTTAAAGAACTGAAGG
GGATCCTCACCTTCTCAGAAGTGATGCACGCACCCATTGCCATCTACTTTGACTTTCCTGGAAA
ACCAGTTGTTCTGAGTGTGGAAGACATGCTCTTGGAGGCGAGCTTTATCCTGGCCACCTTATTG
GACTATCCAAGTAGAACATCTTCACCACAGTCACTGCGCCTTTCCCAGGCACGAAGGTCAGACC
CCACACTGTCCGGTGCTCAGGAGGGTAAAAGCCGAGTCAGCCAGACCCCAGAGAGCATCTCTCG
AGCAGCGCCCAAAAGGCTGTTTCCCAAGGATCCTCCTGACAGCAGCTCTGCAGCAGAGACCAGG
AGAGCCAGCGCCAGCCAGGATGACATCTCCGAGGTGCCTGAGAGTGTTGTCAGTGATATGGAGG
AAGGGCAAAGTCCCTCACCCCTCAGAAAGTTTTCCTGCATGTTCTTTGGAGCAGTATCTTGTGA
ACAGCAAGAGCATGCCAACCACCCCTTGGGCAGTCTGGCAGTAGCAAGCGACAGTGAACAGGAC
GCGAGTGGATGAACGTCCACGCTAAGGCTGTAATAGCCACACCGGGCGCTTGGCTCCCTGAAGG
CCAAGGGGAAACTGAGCAAACTGTCCCAGGATGCCCTGGAGACAGTGTCTCTGCTCTTGCCAGG
ATCACTGTGCACTAAAATCTGTGTCACTTGGGGGACAGAGCTGGCCGCACAAGGATGAGCCATC
GGGGTTAGATGCCACTGTTTAACCCTGCAGCCTTGGCATGTCCCCTGTGGATCCCTAAGGCAGA
CTTCCCTCAGCATCTGGGTGAGGTGGAGCTTCTGTACCTGACAGCAGCCTTCCAGCTTATGTGA
GACCTGACAGGCTTTGTTCAGTGTTGTTTTTCAGAGTAGAGAAAAGGTGGTGAATAAAAGACAT
ACAGTTAACTTCACTTTGTGGTCATTTTATATATTACACGATTTTATTTCCTGGCCCTCAGCTG
CTCTGGTTCCTGTCTGCTATGCAGTGGGATGCAGAGAGCATGCAGTGAAGTCGGTATGAGTCAC
CGGCACACACAGCGGCCGCTGAGCTCAGCCTGGAGTGGAACAAGGTAAGGGGGCAGAGGACAAA
TGCCTGTCCACTGCTCCTCTCAGGTCTAGCTGCTTACATGCACAGATTAAAAACCTGGCACAAA
ACACACTGATGTAACTTATTATGCTGTAGGACTCTCTCCCAAACCAGTGTACAGTGGTTGCAGG
CTACAGGAGTCTTTGGAACATCTTATTGCTAAGTCCTTGGAAACCATCAGACCGTAAGGAAATG
TCAAGCAGCAGGCCAGCCACCGTACTTCACACTCAGCGTTGCCTACGTGGATCAGATGCTGCAG
ACGTGTGAGCAGAGTTCTAGCTGAAACAGTGACTGGGTTCTTGTAGCTTAGCAATGACTCACAG
CTGCCCACAGTAACCTAATAAAAACCCAACTTCACCAACTTCATCCCAAAATGTCCCTCTGTGA
ATGAAAATGGGCTTTCAAGAAGCTTTTTGTGGAAACTGGCAGTGCCCACCTATCTCAGCCTTGT
CCTCTGTTGTAGGCTGAAGATTTATGAATCTCATGTTTACACTGATCACTGGATTGCAGACATT
TCTGCCCAGCACACATGGCTGCAGAGCAGCTGTGGGTCTCCTGCTGAGAACGGCCTGGGCTCAC
CCTGATGCAGCTTCCCAAGCACCTTGGCCAGCGCAGCCTGGCTACAGCACTAATCTGCACAAGA
CGGTGACACTGTGACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGCTCATGTGATGGAATCTAGGCCCTTGCACATCCCAGGTCAGTGCTCTGCTACAGAGCTC
CCCACCCCTCACAGCGGCCTTTCTGGTGGCTCCGTCACTCAGTACTGTCTGGAAGGACACTGAT
GGCTCCAGCTGTAAACTCTCTGTTTTACACTCAACTGTCGTCCATTTTGGTGAACTTCTGAGGA
AGATAAGGAGCTGCTGATGACAGGCCACGCTGCTCTGGCTCAGATGGTAAAGCACGAAGGACAC
GGCTCTGTGGTGCTGGCTCACTGTCAGGTAGACCAAGAAGCTTGGAGTTGGGATGTGACGGAGA
CAATCTGAGCGTCGGTGCTTTAGCCCCTGACCGTTCACACCAAAGGAGTGGCACGTAGTATAAA
TACTGTATTTATTAAATATCCTTACAGTTTATTTAAATGTATTTACAGAACTATTCCTGCATAA
GTTATATTTCAGACATCGATCAGGTCATTGCCTCTGGTAGGACAAACAATGATAGTCTCGACAG
AACACGCAGCTCATTAGCACAGACTCAGATTTGCTCGTCGTTACTATCTTTGCCACCAACTTCC
TGCTAACAGTCACGTTTTGACATGGTCACTGCTCTATTGAGAAGTTCAATTTTGTGATAATTTA
CTTTTTTCAAAGAAATAGAATCCAAATTCTTGTTTCATATTTTGTTTTATAAGCAGATTTTTGC
AAATTTTTTTAAATGTAAAACTGTGACAGTCTCCAGAGAAACTGAGTGTTACAACTTGGCCAGA
GAGAGCTGCTGTACAGTGACAAGAAGCCATGAACCTACTCTAAA

hide sequence

RefSeq Acc Id:

XM_039089633 ⟹ XP_038945561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,223 - 39,909,144 (+)	NCBI
mRatBN7.2	12	34,217,985 - 34,248,380 (+)	NCBI

RefSeq Acc Id:

XM_039089634 ⟹ XP_038945562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,823 - 39,909,144 (+)	NCBI
mRatBN7.2	12	34,218,030 - 34,248,380 (+)	NCBI

RefSeq Acc Id:

XM_039089635 ⟹ XP_038945563

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,846 - 39,909,144 (+)	NCBI
mRatBN7.2	12	34,218,086 - 34,248,380 (+)	NCBI

RefSeq Acc Id:

XM_039089637 ⟹ XP_038945565

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,823 - 39,909,144 (+)	NCBI
mRatBN7.2	12	34,218,030 - 34,248,380 (+)	NCBI

RefSeq Acc Id:

XM_063271561 ⟹ XP_063127631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,223 - 39,909,144 (+)	NCBI

RefSeq Acc Id:

XM_063271562 ⟹ XP_063127632

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,221 - 39,909,144 (+)	NCBI

RefSeq Acc Id:

XM_063271563 ⟹ XP_063127633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,665 - 39,909,144 (+)	NCBI

RefSeq Acc Id:

XM_063271564 ⟹ XP_063127634

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,823 - 39,889,933 (+)	NCBI

RefSeq Acc Id:

XM_063271565 ⟹ XP_063127635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	39,878,823 - 39,909,254 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001025213	(Get FASTA)	NCBI Sequence Viewer
	XP_008767463	(Get FASTA)	NCBI Sequence Viewer
	XP_008767466	(Get FASTA)	NCBI Sequence Viewer
	XP_017453901	(Get FASTA)	NCBI Sequence Viewer
	XP_017453902	(Get FASTA)	NCBI Sequence Viewer
	XP_038945561	(Get FASTA)	NCBI Sequence Viewer
	XP_038945562	(Get FASTA)	NCBI Sequence Viewer
	XP_038945563	(Get FASTA)	NCBI Sequence Viewer
	XP_038945565	(Get FASTA)	NCBI Sequence Viewer
	XP_063127631	(Get FASTA)	NCBI Sequence Viewer
	XP_063127632	(Get FASTA)	NCBI Sequence Viewer
	XP_063127633	(Get FASTA)	NCBI Sequence Viewer
	XP_063127634	(Get FASTA)	NCBI Sequence Viewer
	XP_063127635	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99750	(Get FASTA)	NCBI Sequence Viewer
	EDM13694	(Get FASTA)	NCBI Sequence Viewer
	EDM13695	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000092302
GenBank Protein	Q499V3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001025213 ⟸ NM_001030042

- UniProtKB:

Q499V3 (UniProtKB/Swiss-Prot), A0A8L2QM66 (UniProtKB/TrEMBL), A6J1A5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTGGQVKVFGKAIQTLSRVSDELWLDPSEKGLALRSVNSCHSTYGYVLFSSVFFQHYQWSPSAT
ITDSDIPLNLNCKLAIKSILPIFRCLNYLERSIEKCTMVARSDRCRVVIQFFGRHGIKRTHNVY
FQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSNQEEVTFSVTPENFCLKSSSGESLDLTS
SVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTFSEVMHAPIAIYFDFPGKPVVLSVEDML
LEASFILATLLDYPSRTSSPQSLRLSQARRSDPTLSGAQEGKSRVSQTPESISRAAPKRLFPKD
PPDSSSAAETRRASASQDDISEVPESVVSDMEEGQSPSPLRKFSCMFFGAVSCEQQEHANHPLG
SLAVASDSEQDASG

hide sequence

RefSeq Acc Id:	XP_008767463 ⟸ XM_008769241
- Peptide Label:	isoform X2
- UniProtKB:	Q499V3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MPPFPVAMLKCGMTGGQVKVFGKAIQTLSRVSDELWLDPSEKGLALRSVNSCHSTYGYVLFSSV FFQHYQWSPSATITDSDIPLNLNCKLAIKSILPIFRCLNYLERSIEKCTMVARSDRCRVVIQFF GRHGIKRTHNVYFQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSNQEEVTFSVTPENFCL KSSSGESLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTFSEVMHAPIAIYFDFP GKSDPTLSGAQEGKSRVSQTPESISRAAPKRLFPKDPPDSSSAAETRRASASQDDISEVPESVV SDMEEGQSPSPLRKFSCMFFGAVSCEQQEHANHPLGSLAVASDSEQDASG hide sequence

RefSeq Acc Id:	XP_008767466 ⟸ XM_008769244
- Peptide Label:	isoform X1
- UniProtKB:	A6J1A6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVARSDRCRVVIQFFGRHGIKRTHNVYFQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSN QEEVTFSVTPENFCLKSSSGESLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTF SEVMHAPIAIYFDFPGKPVVLSVEDMLLEASFILATLLDYPSRTSSPQSLRLSQARRSDPTLSG AQEGKSRVSQTPESISRAAPKRLFPKDPPDSSSAAETRRASASQDDISEVPESVVSDMEEGQSP SPLRKFSCMFFGAVSCEQQEHANHPLGSLAVASDSEQDASG hide sequence

RefSeq Acc Id:	XP_017453901 ⟸ XM_017598412
- Peptide Label:	isoform X1
- UniProtKB:	A6J1A6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVARSDRCRVVIQFFGRHGIKRTHNVYFQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSN QEEVTFSVTPENFCLKSSSGESLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTF SEVMHAPIAIYFDFPGKPVVLSVEDMLLEASFILATLLDYPSRTSSPQSLRLSQARRSDPTLSG AQEGKSRVSQTPESISRAAPKRLFPKDPPDSSSAAETRRASASQDDISEVPESVVSDMEEGQSP SPLRKFSCMFFGAVSCEQQEHANHPLGSLAVASDSEQDASG hide sequence

RefSeq Acc Id:	XP_017453902 ⟸ XM_017598413
- Peptide Label:	isoform X1
- UniProtKB:	A6J1A6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVARSDRCRVVIQFFGRHGIKRTHNVYFQDCQPLKILFEKSLCANILMIKPRLLAEAIALLTSN QEEVTFSVTPENFCLKSSSGESLDLTSSVYSEMSFGPEEFDFFQVGLDTEITFCFKELKGILTF SEVMHAPIAIYFDFPGKPVVLSVEDMLLEASFILATLLDYPSRTSSPQSLRLSQARRSDPTLSG AQEGKSRVSQTPESISRAAPKRLFPKDPPDSSSAAETRRASASQDDISEVPESVVSDMEEGQSP SPLRKFSCMFFGAVSCEQQEHANHPLGSLAVASDSEQDASG hide sequence

Ensembl Acc Id:

ENSRNOP00000042520 ⟸ ENSRNOT00000048454

RefSeq Acc Id:	XP_038945561 ⟸ XM_039089633
- Peptide Label:	isoform X1
- UniProtKB:	A6J1A6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945565 ⟸ XM_039089637
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038945562 ⟸ XM_039089634
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038945563 ⟸ XM_039089635
- Peptide Label:	isoform X1
- UniProtKB:	A6J1A6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092302 ⟸ ENSRNOT00000119588

Ensembl Acc Id:

ENSRNOP00000091157 ⟸ ENSRNOT00000094134

RefSeq Acc Id:	XP_063127632 ⟸ XM_063271562
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063127631 ⟸ XM_063271561
- Peptide Label:	isoform X1
- UniProtKB:	A6J1A6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127633 ⟸ XM_063271563
- Peptide Label:	isoform X1
- UniProtKB:	A6J1A6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127635 ⟸ XM_063271565
- Peptide Label:	isoform X7
- UniProtKB:	Q499V3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063127634 ⟸ XM_063271564
- Peptide Label:	isoform X6

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q499V3-F1-model_v2	AlphaFold	Q499V3	1-398	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698648

Promoter ID:

EPDNEW_R9173

Type:

initiation region

Name:

Rad9b_1

Description:

RAD9 checkpoint clamp component B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	39,699,304 - 39,699,364	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308223	AgrOrtholog
BioCyc Gene	G2FUF-19243	BioCyc
Ensembl Genes	ENSRNOG00000021480	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000119588	ENTREZGENE
Gene3D-CATH	3.70.10.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5599441	IMAGE-MGC_LOAD
InterPro	DNA_clamp_sf	UniProtKB/Swiss-Prot
	Rad9	UniProtKB/Swiss-Prot
	Rad9/Ddc1	UniProtKB/Swiss-Prot
KEGG Report	rno:363924	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124758	IMAGE-MGC_LOAD
NCBI Gene	363924	ENTREZGENE
PANTHER	CELL CYCLE CHECKPOINT CONTROL PROTEIN RAD9B	UniProtKB/Swiss-Prot
	PTHR15237	UniProtKB/Swiss-Prot
Pfam	Rad9	UniProtKB/Swiss-Prot
PhenoGen	Rad9b	PhenoGen
PIRSF	Cell_cycle_RAD9	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000021480	RatGTEx
Superfamily-SCOP	DNA clamp	UniProtKB/Swiss-Prot
UniProt	A0A8I6ACT8_RAT	UniProtKB/TrEMBL
	A0A8I6AGA1_RAT	UniProtKB/TrEMBL
	A0A8L2QM66	ENTREZGENE, UniProtKB/TrEMBL
	A6J1A5	ENTREZGENE, UniProtKB/TrEMBL
	A6J1A6	ENTREZGENE, UniProtKB/TrEMBL
	Q499V3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-01	Rad9b	RAD9 checkpoint clamp component B	Rad9b	RAD9 homolog B (S. pombe)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-08-01	Rad9b	RAD9 homolog B (S. pombe)	Rad9b	RAD9 homolog B (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Rad9b	RAD9 homolog B (S. cerevisiae)	Rad9b_predicted	RAD9 homolog B (S. cerevisiae) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Rad9b_predicted	RAD9 homolog B (S. cerevisiae) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar