Ccnb2 (cyclin B2) - Rat Genome Database

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Gene: Ccnb2 (cyclin B2) Rattus norvegicus
Analyze
Symbol: Ccnb2
Name: cyclin B2
RGD ID: 1308176
Description: Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in G1/S transition of mitotic cell cycle and negative regulation of meiotic cell cycle process involved in oocyte maturation. Predicted to act upstream of or within several processes, including T cell homeostasis; meiosis I cell cycle process; and thymus development. Predicted to be located in centrosome and membrane. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm; microtubule organizing center; and nucleus. Orthologous to human CCNB2 (cyclin B2); PARTICIPATES IN cell cycle pathway, mitotic; p53 signaling pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: G2/mitotic-specific cyclin-B2; LOC363088; MGC108931
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Ccnb2-ps2  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8879,968,459 - 79,981,717 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl879,968,465 - 79,981,682 (-)EnsemblGRCr8
mRatBN7.2871,087,594 - 71,100,794 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl871,087,595 - 71,100,874 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx876,621,984 - 76,635,426 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0874,895,005 - 74,908,447 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0872,732,830 - 72,746,269 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0876,847,972 - 76,861,165 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0876,221,508 - 76,233,944 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4874,892,108 - 74,906,181 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera870,627,900 - 70,641,100 (+)NCBICelera
RGSC_v3.1874,911,162 - 74,925,235 (-)NCBI
Cytogenetic Map8q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,1-dichloroethene  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-diaminotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-acetamidofluorene  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (EXP,ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
Abemaciclib  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
antimony(0)  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
aristolochic acids  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
auraptene  (ISO)
benomyl  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
beta-naphthoflavone  (ISO)
bexarotene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
budesonide  (ISO)
buspirone  (EXP)
buta-1,3-diene  (ISO)
Butylbenzyl phthalate  (ISO)
Butylparaben  (ISO)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chlorpromazine  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium atom  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
cordycepin  (ISO)
coumarin  (EXP)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
diarylheptanoid  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
dieldrin  (EXP)
dimethylarsinic acid  (EXP)
dinophysistoxin 2  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Echimidine  (ISO)
emodin  (ISO)
enniatin  (EXP)
Enterolactone  (ISO)
equol  (ISO)
estriol  (ISO)
fenpyroximate  (ISO)
flumequine  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (EXP,ISO)
furan  (EXP)
gamma-tocopherol  (ISO)
genistein  (EXP,ISO)
gentamycin  (EXP)
glycine betaine  (EXP)
heptachlor  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
irinotecan  (EXP,ISO)
isoflavones  (ISO)
L-methionine  (ISO)
Lasiocarpine  (ISO)
leflunomide  (EXP,ISO)
leptomycin B  (ISO)
lidocaine  (EXP,ISO)
lipopolysaccharide  (ISO)
lithium atom  (EXP)
lithium chloride  (ISO)
lithium hydride  (EXP)
lucanthone  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
MeIQx  (ISO)
menadione  (ISO)
mercury atom  (ISO)
mercury dichloride  (EXP)
mercury(0)  (ISO)
metformin  (EXP,ISO)
methamphetamine  (EXP,ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
mirex  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
monocrotaline  (ISO)
monoethyl phthalate  (ISO)
N(4)-hydroxycytidine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
naphthalene  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nickel subsulfide  (EXP)
nimesulide  (EXP)
ochratoxin A  (EXP)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
palbociclib  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenformin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propanal  (ISO)
propiconazole  (ISO)
pyrimidifen  (ISO)
quercetin  (ISO)
reactive oxygen species  (ISO)
resveratrol  (ISO)
retinyl acetate  (ISO)
riddelliine  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (EXP,ISO)
sirolimus  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tacrolimus hydrate  (ISO)
tamoxifen  (ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thifluzamide  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
tocopherol  (ISO)
toluene 2,4-diisocyanate  (ISO)
topotecan  (EXP,ISO)
trabectedin  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
Triptolide  (EXP)
troglitazone  (ISO)
trovafloxacin  (EXP,ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vincristine  (ISO)
vinyl carbamate  (ISO)
zaragozic acid A  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9539739   PMID:12477932   PMID:12954723   PMID:20071461   PMID:21399614   PMID:25468996  


Genomics

Comparative Map Data
Ccnb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8879,968,459 - 79,981,717 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl879,968,465 - 79,981,682 (-)EnsemblGRCr8
mRatBN7.2871,087,594 - 71,100,794 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl871,087,595 - 71,100,874 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx876,621,984 - 76,635,426 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0874,895,005 - 74,908,447 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0872,732,830 - 72,746,269 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0876,847,972 - 76,861,165 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0876,221,508 - 76,233,944 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4874,892,108 - 74,906,181 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera870,627,900 - 70,641,100 (+)NCBICelera
RGSC_v3.1874,911,162 - 74,925,235 (-)NCBI
Cytogenetic Map8q24NCBI
CCNB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381559,105,146 - 59,125,045 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1559,105,078 - 59,125,045 (+)Ensemblhg38GRCh38
GRCh371559,397,345 - 59,417,244 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361557,184,612 - 57,204,536 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341557,184,611 - 57,204,535NCBI
Celera1536,285,270 - 36,305,194 (+)NCBICelera
Cytogenetic Map15q22.2NCBI
HuRef1536,219,537 - 36,239,475 (+)NCBIHuRef
CHM1_11559,515,271 - 59,535,219 (+)NCBICHM1_1
T2T-CHM13v2.01556,907,228 - 56,927,138 (+)NCBIT2T-CHM13v2.0
Ccnb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39970,314,971 - 70,328,836 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl970,314,974 - 70,328,829 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38970,407,689 - 70,421,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl970,407,692 - 70,421,547 (-)Ensemblmm10GRCm38
MGSCv37970,255,496 - 70,269,361 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36970,206,853 - 70,220,718 (-)NCBIMGSCv36mm8
Celera967,623,704 - 67,637,672 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.53NCBI
Ccnb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545015,559,022 - 15,581,760 (-)Ensembl
ChiLan1.0NW_00495545015,558,874 - 15,587,456 (-)NCBIChiLan1.0ChiLan1.0
CCNB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21648,367,902 - 48,390,351 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11552,552,052 - 52,572,806 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01538,075,106 - 38,095,699 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11556,382,391 - 56,402,299 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1556,382,391 - 56,402,299 (+)EnsemblpanPan2panpan1.1
CCNB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13024,040,859 - 24,063,084 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3024,040,859 - 24,063,084 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3024,014,627 - 24,036,855 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03024,209,364 - 24,231,601 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3024,209,368 - 24,231,597 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13024,134,552 - 24,156,769 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03024,217,551 - 24,239,776 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03024,361,281 - 24,383,523 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccnb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640102,368,542 - 102,390,483 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647120,216,586 - 20,238,543 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647120,216,435 - 20,238,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,907,047 - 112,942,235 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11112,907,047 - 112,942,218 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21124,906,568 - 124,942,517 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCNB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12624,389,654 - 24,408,976 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2624,389,642 - 24,409,346 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666048116,914,038 - 116,933,832 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccnb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478112,874,020 - 12,905,932 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478112,875,215 - 12,905,878 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccnb2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1864,766,911 - 64,780,130 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccnb2
124 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:30
Count of miRNA genes:24
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000017117
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85899169791341052Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)863404444108404444Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85899169791341052Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)860248093105248093Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85899169791341052Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat

Markers in Region
PMC22491P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2120,100,439 - 20,100,939 (+)MAPPERmRatBN7.2
Rnor_6.0121,146,050 - 21,146,549NCBIRnor6.0
Rnor_5.0122,625,814 - 22,626,313UniSTSRnor5.0
RGSC_v3.4120,586,019 - 20,586,518UniSTSRGSC3.4
Celera118,074,164 - 18,074,663UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map1p12UniSTS
RH134040  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2120,099,779 - 20,099,962 (+)MAPPERmRatBN7.2
mRatBN7.2871,087,624 - 71,087,807 (+)MAPPERmRatBN7.2
Rnor_6.0876,848,003 - 76,848,185NCBIRnor6.0
Rnor_6.0121,145,390 - 21,145,572NCBIRnor6.0
Rnor_5.0876,233,731 - 76,233,913UniSTSRnor5.0
Rnor_5.0122,625,154 - 22,625,336UniSTSRnor5.0
RGSC_v3.4120,585,359 - 20,585,541UniSTSRGSC3.4
RGSC_v3.4874,892,139 - 74,892,321UniSTSRGSC3.4
Celera870,640,887 - 70,641,069UniSTS
Celera118,075,141 - 18,075,323UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map1p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 52 67 138 95 11 51 36 32 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000100541   ⟹   ENSRNOP00000090642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl879,968,465 - 79,981,682 (-)Ensembl
mRatBN7.2 Ensembl871,087,602 - 71,100,874 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114666   ⟹   ENSRNOP00000080481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl871,088,564 - 71,100,874 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118940   ⟹   ENSRNOP00000093812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl871,087,595 - 71,099,389 (-)Ensembl
RefSeq Acc Id: NM_001009470   ⟹   NP_001009470
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8879,968,459 - 79,981,658 (-)NCBI
mRatBN7.2871,087,594 - 71,100,794 (-)NCBI
Rnor_6.0876,847,972 - 76,861,165 (-)NCBI
Rnor_5.0876,221,508 - 76,233,944 (+)NCBI
RGSC_v3.4874,892,108 - 74,906,181 (-)RGD
Celera870,627,900 - 70,641,100 (+)RGD
Sequence:
RefSeq Acc Id: XM_063265775   ⟹   XP_063121845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8879,968,463 - 79,981,717 (-)NCBI
RefSeq Acc Id: NP_001009470   ⟸   NM_001009470
- UniProtKB: Q5M857 (UniProtKB/TrEMBL),   A0A8I6AAH8 (UniProtKB/TrEMBL),   A0A8I6AKM6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000080481   ⟸   ENSRNOT00000114666
Ensembl Acc Id: ENSRNOP00000090642   ⟸   ENSRNOT00000100541
Ensembl Acc Id: ENSRNOP00000093812   ⟸   ENSRNOT00000118940
RefSeq Acc Id: XP_063121845   ⟸   XM_063265775
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AKM6 (UniProtKB/TrEMBL)
Protein Domains
Cyclin C-terminal   Cyclin-like

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308176 AgrOrtholog
BioCyc Gene G2FUF-29931 BioCyc
Ensembl Genes ENSRNOG00000063216 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000100541 ENTREZGENE
  ENSRNOT00000100541.2 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7383459 IMAGE-MGC_LOAD
  IMAGE:7454811 IMAGE-MGC_LOAD
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_A/B-like UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  Cyclin_related UniProtKB/TrEMBL
  Cyclins_cyclin-box UniProtKB/TrEMBL
KEGG Report rno:363088 UniProtKB/TrEMBL
MGC_CLONE MGC:108931 IMAGE-MGC_LOAD
  MGC:116075 IMAGE-MGC_LOAD
NCBI Gene 363088 ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
PhenoGen Ccnb2 PhenoGen
PIRSF Cyclin_A_B_D_E UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000063216 RatGTEx
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP Cyclin_like UniProtKB/TrEMBL
UniProt A0A8I6AAH8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKM6 ENTREZGENE
  A6KET5_RAT UniProtKB/TrEMBL
  A6KET7_RAT UniProtKB/TrEMBL
  Q4V7F1_RAT UniProtKB/TrEMBL
  Q5M857 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ccnb2  cyclin B2  Ccnb2_predicted  cyclin B2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ccnb2_predicted  cyclin B2 (predicted)      Symbol and Name status set to approved 70820 APPROVED