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Gene: Golga5 (golgin A5) Rattus norvegicus

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Symbol:

Golga5

Name:

golgin A5

RGD ID:

1308163

Description:

Enables protein-macromolecule adaptor activity and small GTPase binding activity. Involved in Golgi organization and retrograde transport, vesicle recycling within Golgi. Located in COPI-coated vesicle membrane and Golgi apparatus. Orthologous to human GOLGA5 (golgin A5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; flutamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

golgi autoantigen, golgin subfamily a, 5; golgin subfamily A member 5; golgin-84; Ret-II

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GOLGA5 (golgin A5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Golga5 (golgin A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Golga5 (golgin A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GOLGA5 (golgin A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GOLGA5 (golgin A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Golga5 (golgin A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GOLGA5 (golgin A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GOLGA5 (golgin A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Golga5 (golgin A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Golga5 (golgin A5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GOLGA5 (golgin A5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Golga5 (golgin A5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	golga5 (golgin A5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T24B1.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T24B1.1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Golgin84	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Golgin84	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	golga5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	golga5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	127,377,244 - 127,405,404 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	127,377,236 - 127,405,403 (+)	Ensembl				GRCr8
mRatBN7.2	6	121,612,389 - 121,640,552 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	121,612,529 - 121,640,413 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	121,751,246 - 121,779,125 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	122,046,504 - 122,074,379 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	121,382,568 - 121,410,729 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	126,350,572 - 126,378,735 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	126,353,223 - 126,378,610 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	135,561,133 - 135,589,807 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	126,740,320 - 126,765,513 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	119,103,910 - 119,128,964 (+)	NCBI		Celera
RGSC_v3.1	6	126,744,066 - 126,769,260 (+)	NCBI
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Thyroid Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

DDE (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fluoranthene (ISO)

flutamide (EXP)

FR900359 (ISO)

fulvestrant (ISO)

hydrogen peroxide (ISO)

methapyrilene (EXP)

nickel atom (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

raloxifene (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

tetrachloromethane (ISO)

thapsigargin (EXP,ISO)

titanium dioxide (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Golgi organization (IBA,IDA,IEA,ISO,ISS)

Golgi vesicle transport (IEA,ISO,ISS)

retrograde transport, vesicle recycling within Golgi (IBA,IMP)

Cellular Component

cis-Golgi network (IEA,ISO)

COPI-coated vesicle membrane (IDA)

Golgi apparatus (IEA,ISO,ISS)

Golgi cis cisterna (IDA)

Golgi cisterna (IBA,IEA,ISO)

Golgi medial cisterna (IDA)

Golgi membrane (IBA,IDA,IEA,ISO)

Golgi trans cisterna (IDA)

membrane (IEA,ISO)

Molecular Function

protein binding (ISO)

protein homodimerization activity (IEA,ISO,ISS)

protein-macromolecule adaptor activity (IBA,IPI)

small GTPase binding (IDA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Detection of a novel type of RET rearrangement (PTC5) in thyroid carcinomas after Chernobyl and analysis of the involved RET-fused gene RFG5.	Klugbauer S, etal., Cancer Res. 1998 Jan 15;58(2):198-203.
4.	Golgin tethers define subpopulations of COPI vesicles.	Malsam J, etal., Science. 2005 Feb 18;307(5712):1095-8.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Golgin-84 is a rab1 binding partner involved in Golgi structure.	Satoh A, etal., Traffic. 2003 Mar;4(3):153-61.

Additional References at PubMed

PMID:9915833	PMID:12538640	PMID:15047867	PMID:19946888	PMID:27502188

Genomics

Comparative Map Data

Golga5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	127,377,244 - 127,405,404 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	127,377,236 - 127,405,403 (+)	Ensembl				GRCr8
mRatBN7.2	6	121,612,389 - 121,640,552 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	121,612,529 - 121,640,413 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	121,751,246 - 121,779,125 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	122,046,504 - 122,074,379 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	121,382,568 - 121,410,729 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	126,350,572 - 126,378,735 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	126,353,223 - 126,378,610 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	135,561,133 - 135,589,807 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	126,740,320 - 126,765,513 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	119,103,910 - 119,128,964 (+)	NCBI		Celera
RGSC_v3.1	6	126,744,066 - 126,769,260 (+)	NCBI
Cytogenetic Map	6	q32	NCBI

GOLGA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	92,794,305 - 92,839,947 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	92,794,230 - 92,839,963 (+)	Ensembl			hg38	GRCh38
GRCh37	14	93,260,650 - 93,306,292 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	92,330,403 - 92,376,057 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	92,330,402 - 92,376,057	NCBI
Celera	14	73,314,759 - 73,360,445 (+)	NCBI		Celera
Cytogenetic Map	14	q32.12	ENTREZGENE
HuRef	14	73,443,587 - 73,489,353 (+)	NCBI		HuRef
CHM1_1	14	93,198,767 - 93,244,558 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	87,026,063 - 87,071,707 (+)	NCBI		T2T-CHM13v2.0

Golga5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	102,435,372 - 102,464,274 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	102,435,394 - 102,464,166 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	102,469,109 - 102,498,015 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	102,469,135 - 102,497,907 (+)	Ensembl			mm10	GRCm38
MGSCv37	12	103,708,120 - 103,736,117 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	102,870,242 - 102,898,957 (+)	NCBI		MGSCv36	mm8
Celera	12	103,681,112 - 103,708,985 (+)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	51.51	NCBI

Golga5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	14,992,710 - 15,035,136 (+)	Ensembl
ChiLan1.0	NW_004955438	14,992,710 - 15,031,297 (+)	NCBI	ChiLan1.0	ChiLan1.0

GOLGA5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	93,954,215 - 93,999,622 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	93,170,720 - 93,216,127 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	73,430,700 - 73,475,979 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	92,770,342 - 92,815,444 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	92,770,342 - 92,815,444 (+)	Ensembl			panPan2	panpan1.1

GOLGA5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	1,874,716 - 1,907,251 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	1,874,833 - 1,907,403 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	1,898,418 - 1,931,308 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	1,930,507 - 1,963,631 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	1,930,452 - 1,963,631 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	1,866,438 - 1,899,688 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	1,816,771 - 1,849,647 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	1,943,874 - 1,976,991 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Golga5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	12,599,965 - 12,635,665 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936733	831,076 - 867,207 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936733	831,247 - 867,207 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GOLGA5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	114,237,145 - 114,273,915 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	114,237,059 - 114,273,916 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	120,849,075 - 120,882,783 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GOLGA5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	70,544,246 - 70,590,195 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	70,544,237 - 70,590,312 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	57,792,637 - 57,838,832 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Golga5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	9,292,714 - 9,340,905 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	9,288,953 - 9,339,573 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Golga5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	113,746,590 - 113,773,874 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Golga5
215 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	94
Count of miRNA genes:	86
Interacting mature miRNAs:	89
Transcripts:	ENSRNOT00000010385
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	112483610	147156653	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	114241077	147156653	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	110921244	147156653	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	118366855	147156653	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	122236101	147156653	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	121444670	147156653	Rat

Markers in Region

RH132984

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	121,640,151 - 121,640,349 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	126,378,335 - 126,378,532	NCBI	Rnor6.0
Rnor_5.0	6	135,589,407 - 135,589,604	UniSTS	Rnor5.0
RGSC_v3.4	6	126,765,591 - 126,765,788	UniSTS	RGSC3.4
Celera	6	119,129,042 - 119,129,239	UniSTS
RH 3.4 Map	6	849.0	UniSTS
Cytogenetic Map	6	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY144587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010385 ⟹ ENSRNOP00000010385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	127,377,236 - 127,405,403 (+)	Ensembl
mRatBN7.2 Ensembl	6	121,612,529 - 121,640,413 (+)	Ensembl
Rnor_6.0 Ensembl	6	126,353,223 - 126,378,610 (+)	Ensembl

RefSeq Acc Id:

NM_001033065 ⟹ NP_001028237

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	127,377,244 - 127,405,404 (+)	NCBI
mRatBN7.2	6	121,612,389 - 121,640,552 (+)	NCBI
Rnor_6.0	6	126,353,252 - 126,378,257 (+)	NCBI
Rnor_5.0	6	135,561,133 - 135,589,807 (+)	NCBI
RGSC_v3.4	6	126,740,320 - 126,765,513 (+)	RGD
Celera	6	119,103,910 - 119,128,964 (+)	RGD

Sequence:

show sequence

ATGTCTTGGTTTGCTGATCTTGCTGGAAGGGCTGAAGATCTTTTAAACCGAGTGGATCAGGGGG
CTGCAACAGCTCTCAGAAAGGAGAGTACCAGCAACACCTTTTATAGCAAAAATACTGACTATCC
TGAACTTCACCAGCAAAACACAGATTCAACTTACCACACTGGACAGAAAGCTAACTATATTTCC
TCAGCTGCTGATAACATCCGGCATCAGAAAGCCACGATCATAGCTGGCACAGCAAATGTGAAAG
TCGGATCCAGGACAGGCGGAGATGCCTCCCATCCCACTGAACATGCATCTGTCCCTAGGCCTTC
ATCCCATTTTGTTCGGAGGAAAAAGTCAGAGCCTGATGATGAGCTGCTATTCGATTTTCTTAAC
AGTTCCCAGAAAGAGCCCACTGGGAGAGTGGAAATCAAGAAAGAGAAGGGCAAAGCACCTGTGC
TCCCAAGTTCTCAGTCATCAGCTGTCAGTTCTGTCACCACCAGTGTAACCACCATCAAGGCCAC
TGAAGAAAATTCTGGGAGCCAAAGTCCTGAAGTGAGTAGCTCTGATTCTATGCCGGAAGGTCAT
AAAAAATCCACAGAGGAAAGCACAGTATCGAATGCTATCAGTGTGGAGCACAGCTCTGTACCTA
GTGATGGAAGCATGTCCCATGAGCTGTCTAATCTCCGACTGGAGAATCAGCTGCTCAGGAATGA
AGTCCAGTCTTTAAATCAGGAAATGGCCTCATTGCTTCAGAGATCCAAGGAAACTCAAGAAGAA
TTAAACGAGGCAAGAGTAAGAGTTGAAAAATGGAATGTTGACAATTCAAAGAGTGATCGAATAA
CTCGGGAACTACGAGCCCAAGTCGATGATCTCACTGAAGCAGTGGCTGCAAAGGACTCCCAGCT
GGCTGTCCTCAAAGTGCGACTGCAGGAGGCTGACCAGGTGCTGAGCTCCCGCACGGAAGCACTG
GAAGCTTTACAGAGTGAAAAGTCACGAATAATGCAGGATCACAATGAAGGTAGTAGTCTACAAA
ATCAAGCTCTGCAAACTCTTCAGGAGAGGCATGAAGCGGATGCCACTCTGAAGAGAGAGCAAGA
GAGCTACAAACAAATGCAGAGTGAGTTTGCTACACGCCTTAATAAAATGGAAGTGGAACGTCAG
AATTTGGCAGAAGCAGTTACCCTGGCAGAAAGAAAGTACTCTGAGGAGAGGAAGAAGGTTGATG
ACCTCCAGCAGCAAGTCAAGTTACACAGGTCGAGCTTGGAGTCCGCTAAGCAGGAGTTAGTTGA
CTACAAGCAAAAAGCTACAAGGATACTCCAATCTAAAGAAAAACTGATCAATAGCTTAAAGGAA
GGCTCGAGTTTTGAAGGCCTAGATAGCAGTACTGCTAGCAGCATGGAACTAGAAGAACTTCGGC
ATGAGAGAGAGTTGCAGAAGGAGGAGATCCAGAAGTTGATGGGCCAGATACATCAGCTGAGATC
TGAGCTACAGGATATGGAGGCTCAGCAGGTTAGTGAAGCAGAATCAGCAAGAGAACAATTACAA
GATCTGCAAGACCAGATAGCTAAGCAGAGGGCATCTAAACAAGAGCTGGAAACGGAGCTGGACC
GAATGAAACAGGAATTCCATTACGTGGAGGAAGATCTGCATAGAACGAAGAACACACTGCAAAG
CAGGATTAAAGATCGAGAGGAGGAAATTCAAAAGCTGAGGAATCAGCTCACCAACAAAACTTTA
AGCAACAGCAGCCAGTCGGAGCTAGAGAGCCGCCTCCATCAGCTAACGGAAACACTCATCCAGA
AGCAGACCCTGCTGGAGAGCCTCAGCACAGAGAAGAACTCCCTGGTCTTCCAGCTGGAGCGCCT
CGAGCAGCAGCTGCACTCTGCCGCCACGGGGCCCAGCAGCGGATCCTCCATTAACATGTCTGGA
GTTGACAGTGGTGAAGGGACACGCCTGCGAAATGTTCCTGTTCTTTTTAATGACACAGAAACTA
ATCTAGCAGGAATGTATGGGAAGGTTCGCAAAGCTGCTAGCTCCATTGACCAATTTAGTATTCG
CCTGGGAATTTTCCTCCGGAGGTACCCCATAGCACGAGTGTTTGTGATTATCTATATGGCTTTA
CTTCACCTCTGGGTCATGATTGTCCTGCTGACCTACTCACCAGAAATGCACCATGACCAACCGT
ACGGCAAGTGA

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Protein Sequences


Protein RefSeqs	NP_001028237	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAN17671	(Get FASTA)	NCBI Sequence Viewer
	EDL81746	(Get FASTA)	NCBI Sequence Viewer
	EDL81747	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010385
GenBank Protein	Q3ZU82	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001028237 ⟸ NM_001033065

- UniProtKB:

Q3ZU82 (UniProtKB/Swiss-Prot), G3V6Z7 (UniProtKB/TrEMBL), A6JEK2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSWFADLAGRAEDLLNRVDQGAATALRKESTSNTFYSKNTDYPELHQQNTDSTYHTGQKANYIS
SAADNIRHQKATIIAGTANVKVGSRTGGDASHPTEHASVPRPSSHFVRRKKSEPDDELLFDFLN
SSQKEPTGRVEIKKEKGKAPVLPSSQSSAVSSVTTSVTTIKATEENSGSQSPEVSSSDSMPEGH
KKSTEESTVSNAISVEHSSVPSDGSMSHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEE
LNEARVRVEKWNVDNSKSDRITRELRAQVDDLTEAVAAKDSQLAVLKVRLQEADQVLSSRTEAL
EALQSEKSRIMQDHNEGSSLQNQALQTLQERHEADATLKREQESYKQMQSEFATRLNKMEVERQ
NLAEAVTLAERKYSEERKKVDDLQQQVKLHRSSLESAKQELVDYKQKATRILQSKEKLINSLKE
GSSFEGLDSSTASSMELEELRHERELQKEEIQKLMGQIHQLRSELQDMEAQQVSEAESAREQLQ
DLQDQIAKQRASKQELETELDRMKQEFHYVEEDLHRTKNTLQSRIKDREEEIQKLRNQLTNKTL
SNSSQSELESRLHQLTETLIQKQTLLESLSTEKNSLVFQLERLEQQLHSAATGPSSGSSINMSG
VDSGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARVFVIIYMAL
LHLWVMIVLLTYSPEMHHDQPYGK

hide sequence

Ensembl Acc Id:

ENSRNOP00000010385 ⟸ ENSRNOT00000010385

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3ZU82-F1-model_v2	AlphaFold	Q3ZU82	1-728	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308163	AgrOrtholog
BioCyc Gene	G2FUF-36449	BioCyc
Ensembl Genes	ENSRNOG00000007699	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000010385	ENTREZGENE
Gene3D-CATH	1.20.5.1700	UniProtKB/Swiss-Prot
InterPro	Golgin_subfamily_A_member_5	UniProtKB/Swiss-Prot
KEGG Report	rno:299258	UniProtKB/Swiss-Prot
NCBI Gene	299258	ENTREZGENE
PANTHER	GOLGIN SUBFAMILY A MEMBER 5	UniProtKB/Swiss-Prot
	PTHR13815	UniProtKB/Swiss-Prot
Pfam	Golgin_A5	UniProtKB/Swiss-Prot
PhenoGen	Golga5	PhenoGen
RatGTEx	ENSRNOG00000007699	RatGTEx
UniProt	A6JEK2	ENTREZGENE, UniProtKB/TrEMBL
	A6JEK3_RAT	UniProtKB/TrEMBL
	G3V6Z7	ENTREZGENE, UniProtKB/TrEMBL
	GOGA5_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Golga5	golgin A5	Golga5	golgi autoantigen, golgin subfamily a, 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Golga5	golgi autoantigen, golgin subfamily a, 5	Golga5_predicted	golgi autoantigen, golgin subfamily a, 5 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Golga5_predicted	golgi autoantigen, golgin subfamily a, 5 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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