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Gene: Chst1 (carbohydrate sulfotransferase 1) Rattus norvegicus

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Symbol:

Chst1

Name:

carbohydrate sulfotransferase 1

RGD ID:

1308142

Description:

Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and keratan sulfotransferase activity. Predicted to be involved in several processes, including N-acetylglucosamine metabolic process; galactose metabolic process; and keratan sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Orthologous to human CHST1 (carbohydrate sulfotransferase 1); PARTICIPATES IN keratan sulfate biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

carbohydrate (keratan sulfate Gal-6) sulfotransferase 1; galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 1; GST-1; keratan sulfate Gal-6 sulfotransferase; KS6ST; KSGal6ST; KSST; LOC295934

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CHST1 (carbohydrate sulfotransferase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Chst1 (carbohydrate sulfotransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Chst1 (carbohydrate sulfotransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CHST1 (carbohydrate sulfotransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CHST1 (carbohydrate sulfotransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Chst1 (carbohydrate sulfotransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CHST1 (carbohydrate sulfotransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CHST1 (carbohydrate sulfotransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Chst1 (carbohydrate sulfotransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Chst1 (carbohydrate sulfotransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MEGF10 (multiple EGF like domains 10)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CHST1 (carbohydrate sulfotransferase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Chst1 (carbohydrate sulfotransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	chst1 (carbohydrate (keratan sulfate Gal-6) sulfotransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG31637	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9550	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9550	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	chst1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	99,003,987 - 99,030,214 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	99,009,958 - 99,031,262 (+)	Ensembl				GRCr8
mRatBN7.2	3	78,552,059 - 78,574,740 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	78,548,525 - 78,574,883 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	82,035,917 - 82,050,727 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	90,634,960 - 90,649,770 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	88,485,799 - 88,500,669 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	81,441,785 - 81,512,829 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	81,498,022 - 81,512,807 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	88,201,573 - 88,216,380 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	76,994,089 - 77,008,874 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	77,761,117 - 77,775,904 (+)	NCBI		Celera
RGSC_v3.1	3	76,890,516 - 76,905,302 (+)	NCBI
Cytogenetic Map	3	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,3',5-triiodo-L-thyronine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

alpha-Zearalanol (EXP)

amitrole (EXP)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

buta-1,3-diene (ISO)

butanal (ISO)

Butylbenzyl phthalate (EXP,ISO)

Butylparaben (ISO)

C60 fullerene (EXP)

carbon nanotube (ISO)

chlorpyrifos (ISO)

chrysene (ISO)

cisplatin (ISO)

clotrimazole (EXP)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dioxygen (EXP)

epoxiconazole (EXP)

ethanol (ISO)

fipronil (EXP)

folic acid (ISO)

furan (EXP)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

methoxychlor (EXP)

methylparaben (ISO)

monosodium L-glutamate (ISO)

N-Acetyl-S-(1,2-dichlorovinyl)-cysteine (ISO)

N-methyl-4-phenylpyridinium (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

pentanal (ISO)

perfluorooctanoic acid (EXP,ISO)

permethrin (ISO)

propanal (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (EXP,ISO)

sodium arsenite (ISO)

sodium fluoride (EXP)

sunitinib (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (EXP,ISO)

trimellitic anhydride (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

galactose metabolic process (ISO)

inflammatory response (IEA)

keratan sulfate proteoglycan biosynthetic process (ISO,ISS)

keratan sulfate proteoglycan metabolic process (IBA)

N-acetylglucosamine metabolic process (IBA)

sulfur compound metabolic process (IBA,ISO)

Cellular Component

Golgi membrane (IEA)

Molecular Function

keratan sulfotransferase activity (IBA,IEA,ISO,ISS)

N-acetylglucosamine 6-O-sulfotransferase activity (IBA)

protein binding (ISO)

sulfotransferase activity (IEA,ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

keratan sulfate biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9405439	PMID:10330415	PMID:12477932	PMID:15489334	PMID:16751776	PMID:16778019

Genomics

Comparative Map Data

Chst1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	99,003,987 - 99,030,214 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	99,009,958 - 99,031,262 (+)	Ensembl				GRCr8
mRatBN7.2	3	78,552,059 - 78,574,740 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	78,548,525 - 78,574,883 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	82,035,917 - 82,050,727 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	90,634,960 - 90,649,770 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	88,485,799 - 88,500,669 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	81,441,785 - 81,512,829 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	81,498,022 - 81,512,807 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	88,201,573 - 88,216,380 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	76,994,089 - 77,008,874 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	77,761,117 - 77,775,904 (+)	NCBI		Celera
RGSC_v3.1	3	76,890,516 - 76,905,302 (+)	NCBI
Cytogenetic Map	3	q31	NCBI

CHST1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	45,647,689 - 45,665,622 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	45,647,689 - 45,666,096 (-)	Ensembl			hg38	GRCh38
GRCh37	11	45,669,239 - 45,687,172 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	45,627,003 - 45,643,748 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	45,627,002 - 45,643,748	NCBI
Celera	11	45,817,781 - 45,834,528 (-)	NCBI		Celera
Cytogenetic Map	11	p11.2	NCBI
HuRef	11	45,377,231 - 45,382,150 (-)	NCBI		HuRef
CHM1_1	11	45,666,565 - 45,684,532 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	45,803,398 - 45,821,330 (-)	NCBI		T2T-CHM13v2.0

Chst1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	92,429,978 - 92,445,597 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	92,430,052 - 92,445,595 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	92,599,632 - 92,615,252 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	92,599,707 - 92,615,250 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	92,439,864 - 92,455,409 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	92,412,616 - 92,416,089 (+)	NCBI		MGSCv36	mm8
Celera	2	93,994,573 - 94,009,859 (+)	NCBI		Celera
Cytogenetic Map	2	E1	NCBI
cM Map	2	51.17	NCBI

Chst1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	2,269,791 - 2,274,714 (+)	Ensembl
ChiLan1.0	NW_004955422	2,269,791 - 2,274,714 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHST1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	47,859,034 - 47,875,769 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	47,865,617 - 47,882,361 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	45,604,605 - 45,621,332 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	46,096,894 - 46,106,729 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

CHST1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	43,734,469 - 43,739,640 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	42,451,116 - 42,467,610 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	44,378,514 - 44,395,022 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	44,378,537 - 44,395,019 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	43,863,268 - 43,879,759 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	43,416,770 - 43,433,264 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	44,148,886 - 44,165,391 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Chst1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	21,206,205 - 21,212,818 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936562	3,320,957 - 3,324,454 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936562	3,318,821 - 3,324,460 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHST1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	16,772,262 - 16,789,027 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	16,772,210 - 16,789,031 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	18,178,340 - 18,195,423 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHST1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	19,678,972 - 19,696,466 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	19,694,243 - 19,695,478 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	116,949,320 - 116,966,120 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chst1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	2,798,715 - 2,803,082 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624767	2,788,208 - 2,803,093 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Chst1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	66,768,789 - 66,783,505 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Chst1
123 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	328
Count of miRNA genes:	186
Interacting mature miRNAs:	225
Transcripts:	ENSRNOT00000010510
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	73592611	110333156	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

RH133864

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	78,574,311 - 78,574,522 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	81,512,401 - 81,512,611	NCBI	Rnor6.0
Rnor_5.0	3	88,215,952 - 88,216,162	UniSTS	Rnor5.0
RGSC_v3.4	3	77,008,468 - 77,008,678	UniSTS	RGSC3.4
Celera	3	77,775,498 - 77,775,708	UniSTS
RH 3.4 Map	3	685.09	UniSTS
Cytogenetic Map	3	q24	UniSTS

UniSTS:498370

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	99,029,624 - 99,030,049 (+)	Marker Load Pipeline
Rnor_5.0	3	88,215,790 - 88,216,215	NCBI	Rnor5.0
RGSC_v3.4	3	77,008,306 - 77,008,731	UniSTS	RGSC3.4
Celera	3	77,775,336 - 77,775,761	UniSTS
Cytogenetic Map	3	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	162	91	90	59	92	59	6	355	191	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC086551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ625652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ626604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ727497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ746743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ760246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010510 ⟹ ENSRNOP00000010510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	99,014,825 - 99,030,348 (+)	Ensembl
mRatBN7.2 Ensembl	3	78,559,303 - 78,574,883 (+)	Ensembl
Rnor_6.0 Ensembl	3	81,498,022 - 81,512,807 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095049 ⟹ ENSRNOP00000090213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	99,011,622 - 99,030,629 (+)	Ensembl
mRatBN7.2 Ensembl	3	78,558,293 - 78,574,883 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095051 ⟹ ENSRNOP00000081989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	99,010,465 - 99,030,629 (+)	Ensembl
mRatBN7.2 Ensembl	3	78,560,017 - 78,574,883 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098205 ⟹ ENSRNOP00000087464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	99,011,622 - 99,030,629 (+)	Ensembl
mRatBN7.2 Ensembl	3	78,565,665 - 78,574,737 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113200 ⟹ ENSRNOP00000079857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	99,009,958 - 99,030,629 (+)	Ensembl
mRatBN7.2 Ensembl	3	78,548,525 - 78,574,883 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114058 ⟹ ENSRNOP00000086161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	99,011,622 - 99,030,629 (+)	Ensembl
mRatBN7.2 Ensembl	3	78,558,888 - 78,574,740 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121918 ⟹ ENSRNOP00000108905

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	99,014,640 - 99,031,262 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000123909 ⟹ ENSRNOP00000106031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	99,009,958 - 99,030,629 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135051 ⟹ ENSRNOP00000100625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	99,015,913 - 99,030,629 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000165121 ⟹ ENSRNOP00000104653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	99,010,399 - 99,030,629 (+)	Ensembl

RefSeq Acc Id:

NM_001011955 ⟹ NP_001011955

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	99,015,406 - 99,030,214 (+)	NCBI
mRatBN7.2	3	78,559,932 - 78,574,740 (+)	NCBI
Rnor_6.0	3	81,498,022 - 81,512,807 (+)	NCBI
Rnor_5.0	3	88,201,573 - 88,216,380 (+)	NCBI
RGSC_v3.4	3	76,994,089 - 77,008,874 (+)	RGD
Celera	3	77,761,117 - 77,775,904 (+)	RGD

Sequence:

show sequence

GGAGGAGGAGGAGGAGGATGCCTCCGCCACCGCCACCACCACCCGCGGGCCCCCGGCGAGCCTG
ACTCCAGACCGAGGATGGAGCCGACGCTGGGCGCTGCAGCGGCTCCGGGCGCGCAGGCCACCAG
GTAACTGCTGTGTGTGCTGCATGTGGTTGGAAGAAGACCCCTGTCCCCAGCTGTTCCTTTGGAG
CGACCTTCTCTACCTGAAGGCCTGGGGTGAGCCACCTCCATCCCAGGACCAGCTGAGTTCCAGA
AGACCCCGTGCCTTGGAGCAGCAGCCCCATGACGGTGCCCAGCCATGCAATGTTCCTGGAAGGC
TGTCCTCCTCCTCGCCCTGGCCTCCATTGCCATCCAGTACACAGCCATCCGCACATTCACTGCC
AAGTCTTTCCACACTTGCCCTGGGCTGACAGAAACTGGGCTGGCAGAGCGGCTGTGTGAGGAGG
GCCCCACCTTCTCCTATAACCTCTCCAGAAAGACCCACGTCCTCATCTTGGCCACCACACGCAG
TGGTTCATCCTTTGTGGGCCAGCTCTTCAACCAGCACATGGATGTCTTCTACCTGTTTGAGCCT
CTCTACCACGTCCAGAACACGCTCATCCCCCGCTTCACCCAGGGCAAGAGCCCCGCCGACCGCA
GGGTCATGCTAGGTGCCAGCCGGGACCTGCTGAGGAGCCTTTATGATTGTGATCTCTACTTTCT
GGAGAATTACATCAAGCCACCTCCGGTCAACCACACCACCGACCGGGTCTTCCGCCGAGGGGCC
AGCAGGGTCCTCTGTTCCCGTCCTGTGTGTGACCCTCCTGGGGCCTCTGACCTGATCCTGGAGG
AGGGGGACTGTGTGCGTAAGTGCGGCTTGCTGAACCTGACCTTGGCAGCTGAGGCTTGTCGTGA
GCGCAGCCATGTGGCCATCAAGACTGTGCGGGTGCCTGAGGTGAATGACTTGCGGGCCCTAGTG
GAAGACCCCAGGTTGAATCTCAAGGTCATCCAGCTGGTGCGAGACCCTCGTGGTATCTTAGCTT
CTCGGAGTGAGACTTTCCGGGACACATACCGACTCTGGCGGCTTTGGTACGGCACAGGGAGGAA
GCCCTACAACCTGGACGTGACCCAGCTGACCACAGTGTGTGAGGATTTCTCTAGCTCTGTGTCT
ACTGGCCTCATGCGGCCCTCCTGGCTCAAGGGCAAGTACATGTTGGTACGTTATGAGGACCTGG
CCAGGAATCCAATGAAGAAGACAGAGGAGATCTACGAATTCCTGGGTATCCCCCTGGACAGTCA
CGTGGCACGCTGGATCCAGAACAATACGAGGGGTGACCCCACTTTGGGCAAGCACAAATACGGC
ACAGTGCGCAACTCTGCAGCCACAGCTGAGAAGTGGCGCTTCCGCCTCTCCTATGACATCGTGG
CCTTTGCTCAGAACGCCTGCCAGCATGTGCTGGCACAGCTGGGCTACAAGATGGCCACCTCGGA
GGAGGAGCTGAAGAACCCAGCCATCAGCCTAGTGGAGGAGCGCGACTTCCGCCCTTTTTTGTGA
CCTGGGTGTGGTGGGGGTGGGAGGCAGGTGGCTCTGGTTTTGCTGATGTGGACCTACTACGGGC
CGTTTTTTAACTGTTGCCTTATCTCTCTCCTCCCTCTCCCACCCTGTTTGTGTGTCCTTTCCAC
ACAATCCCCCACCCCGGGTCTACTCCTCTCCCACGCCATCTGCGCATCCTTCTTGCCCTTGTCC
ACTCCCTTTCCTCCTGCCTCTTTCTGCCCCTGAAATTTGCACTATGTCTCTGGAGGGGAACACT
GGGCAGAGGGCGTGTGATGTGGGGTTACAGCCCCCCACCCCATTTAGACACAAGGCTGCTGGGT
CTCTATGCGGATGGGGACAATGTTTACAGGCACCCAGTCACACATTCACGTGTGCACACAGGCA
CACGACGAGAGGCACCCCAGCACATAGCTTGTAGTTTTTGCAATTGTCTTCTCCAGGTAATAGG
ATGGACACAAAGGGGCCACACCCCCCAGTTTAAGAAAAGAGTCCATCCCAACCCCCTCCCTGCT
CCTCCCCTGGAGCAGGGCACCCATCCCTCCTGCACACCCTTGCCTGGTGGTGAGCAGGGTTTTA
CTGTGAGGTGAATTGGGATTACTTTCTTTCTATTTGGTTTGTGGTGAGCTTGTCTGTCTGAGTC
TTGTGTCTACCCCTAGACCAGTAATGGCTAATGAATCTTAGAAATTTCTGATTGATCTTGGGGT
CCCTCTGTGATATTTCTTTGTGCCAAAAAGATATAAAAAAAGACAAAAATATGTGAATCAGTTT
GCTAAATGAAAATTGAAATGCTTTATTTGTGTTTTCTGTAAATAAAAATGTGCAGCACTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGG

hide sequence

RefSeq Acc Id:

XM_017591560 ⟹ XP_017447049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	99,003,987 - 99,030,193 (+)	NCBI
mRatBN7.2	3	78,552,059 - 78,574,736 (+)	NCBI
Rnor_6.0	3	81,451,620 - 81,512,829 (+)	NCBI

Sequence:

show sequence

TTTTTTTTTTTTTTTTTAGAAATCTGCCCTGTTATGGAGCAAGGCTGCCCATTTCATACCCAGG
GAGAGTGATCAAGGAGCAGGATGGGTGGGCGTTTCCTTAGTAAATCTCAGGCCTGCTTGATGCT
TCACAGTCTTTTCAGATGCGTTCTGAGTCATGATCCTGACCGGTGATATGAACTGTAGTTCTTT
ATTTTCTGCCATTATGTACAAGGAAGGGCGCTACCTTTATGCTTTGTTTTCCACCATTTAAACA
GGACATGGAGTGACATGGAGCCTGATGGAATATGGCCGGGGCGAATCACACAGCCACAGTCATC
TATTGTCCCACCACCCTGCACACACTCCCATTGGACATGAGTGTTATGAGAGGCGCATCACATC
AACAGAATTTCCCCATGGCTTCTGGTTCTTAGTCATCCAATCAAAACAGGAAGCCTCTCGGACG
GGCACTCCAGGCCACTTTGAGGAAGATTCCTGAGCAAGACTTCGGAAATGGCCCTTTATTTCTG
TCTCCTGGCCTTCCCCTGTGGATTCCTGCCTGTTAAAGGCAATGCCTATTCCTGCCTGCCTGTC
GCCCCTGCCTACAGAGAATGGTGCAGAAGTGCCTCCAACCTTCTCAAGCCCAGCTGAGGGCTTG
CTGCAAGGTGGAAGTGGGGACCGGAAGGTGTCAAACCCCTTGAGCAAGGGGGATGGTGAGAGAT
GCTGGAGGTGGACAGACAAGCAGCCATGGAGACATTCCCTCCAATTTATCCAGAAAGGGAACAC
ATCTGAAGTGGGTCAGAGGCAGAAGCAAAAAGCGTATGAGCCTGGTCTCTCAGGAAGCTACAGA
CTTGAAGCTAAATGCACCCCCGTGTAGCCTTAGGAGTGACAGATGGACAGACTGTGGAAATGAT
TCTAGGAGACTTAAGAGATGGCGGAGACAGAAGCCCACTCCTTTGGACCATCACTTGGACGAAA
TCTACCACTGCCTACGGACAATCTCCTGTTCCGAGCTCTGCAACACACCTACGCATCTTCAGGT
GGAAACAGGAAAAGACAACACTGTGGTGAGCGAGCCACCCGGGGCTAGCGCCCCCGGGCCATGG
AGAGGGGCCCGTGAGGGACGCGCGGAGGCGGAGGAAGAGGCTCGGGAGGAGGGAGGCCGAGAAA
CAGGGCGCGGGAGGAGGAGGAGGAGGATGCCTCCGCCACCGCCACCACCACCCGCGGGCCCCCG
GCGAGCCTGACTCCAGACCGAGGATGGAGCCGACGCTGGGCGCTGCAGCGGCTCCGGGCGCGCA
GGCCACCAGGTAACTGCTGTGTGTGCTGCATGTGGTTGGAAGAAGACCCCTGTCCCCAGCTGTT
CCTTTGGAGCGACCTTCTCTACCTGAAGGCCTGGGGTGAGCCACCTCCATCCCAGGACCAGCTG
AGTTCCAGAAGACCCCGTGCCTTGGAGCAGCAGCCCCATGACGGTGCCCAGCCATGCAATGTTC
CTGGAAGGCTGTCCTCCTCCTCGCCCTGGCCTCCATTGCCATCCAGTACACAGCCATCCGCACA
TTCACTGCCAAGTCTTTCCACACTTGCCCTGGGCTGACAGAAACTGGGCTGGCAGAGCGGCTGT
GTGAGGAGGGCCCCACCTTCTCCTATAACCTCTCCAGAAAGACCCACGTCCTCATCTTGGCCAC
CACACGCAGTGGTTCATCCTTTGTGGGCCAGCTCTTCAACCAGCACATGGATGTCTTCTACCTG
TTTGAGCCTCTCTACCACGTCCAGAACACGCTCATCCCCCGCTTCACCCAGGGCAAGAGCCCCG
CCGACCGCAGGGTCATGCTAGGTGCCAGCCGGGACCTGCTGAGGAGCCTTTATGATTGTGATCT
CTACTTTCTGGAGAATTACATCAAGCCACCTCCGGTCAACCACACCACCGACCGGGTCTTCCGC
CGAGGGGCCAGCAGGGTCCTCTGTTCCCGTCCTGTGTGTGACCCTCCTGGGGCCTCTGACCTGA
TCCTGGAGGAGGGGGACTGTGTGCGTAAGTGCGGCTTGCTGAACCTGACCTTGGCAGCTGAGGC
TTGTCGTGAGCGCAGCCATGTGGCCATCAAGACTGTGCGGGTGCCTGAGGTGAATGACTTGCGG
GCCCTAGTGGAAGACCCCAGGTTGAATCTCAAGGTCATCCAGCTGGTGCGAGACCCTCGTGGTA
TCTTAGCTTCTCGGAGTGAGACTTTCCGGGACACATACCGACTCTGGCGGCTTTGGTACGGCAC
AGGGAGGAAGCCCTACAACCTGGACGTGACCCAGCTGACCACAGTGTGTGAGGATTTCTCTAGC
TCTGTGTCTACTGGCCTCATGCGGCCCTCCTGGCTCAAGGGCAAGTACATGTTGGTACGTTATG
AGGACCTGGCCAGGAATCCAATGAAGAAGACAGAGGAGATCTACGAATTCCTGGGTATCCCCCT
GGACAGTCACGTGGCACGCTGGATCCAGAACAATACGAGGGGTGACCCCACTTTGGGCAAGCAC
AAATACGGCACAGTGCGCAACTCTGCAGCCACAGCTGAGAAGTGGCGCTTCCGCCTCTCCTATG
ACATCGTGGCCTTTGCTCAGAACGCCTGCCAGCATGTGCTGGCACAGCTGGGCTACAAGATGGC
CACCTCGGAGGAGGAGCTGAAGAACCCAGCCATCAGCCTAGTGGAGGAGCGCGACTTCCGCCCT
TTTTTGTGACCTGGGTGTGGTGGGGGTGGGAGGCAGGTGGCTCTGGTTTTGCTGATGTGGACCT
ACTACGGGCCGTTTTTTAACTGTTGCCTTATCTCTCTCCTCCCTCTCCCACCCTGTTTGTGTGT
CCTTTCCACACAATCCCCCACCCCGGGTCTACTCCTCTCCCACGCCATCTGCGCATCCTTCTTG
CCCTTGTCCACTCCCTTTCCTCCTGCCTCTTTCTGCCCCTGAAATTTGCACTATGTCTCTGGAG
GGGAACACTGGGCAGAGGGCGTGTGATGGGGGTTACAGCCCCCCACCCCATTTAGACACAAGGC
TGCTGGGTCTCTATGCGGATGGGGACAATGTTTACAGGCACCCAGTCACACATTCACGTGTGCA
CACAGGCACACGACGAGAGGCACCCCAGCACATAGCTTGTAGTTTTTGCAATTGTCTTCTCCAG
GTAATAGGATGGACACAAAGGGGCCACACCCCCCAGTTTAAGAAAAGAGTCCATCCCAACCCCC
TCCCTGCTCCTCCCCTGGAGCAGGGCACCCATCCCTCCTGCACACCCTTGCCTGGTGGTGAGCA
GGGTTTTACTGTGAGGTGAATTGGGATTACTTTCTTTCTATTTGGTTTGTGGTGAGCTTGTCTG
TCTGAGTCTTGTGTCTACCCCTAGACCAGTAATGGCTAATGAATCTTAGAAATTTCTGATTGAT
CTTGGGGTCCCTCTGTGATATTTCTTTGTGCCAAAAAGATATAAAAAAAGACAAAAATATGTGA
ATCAGTTTGCTAAATGAAAATTGAAATGCTTTATTTGTGTTTTCTGTAAATAAAAATGTGCAGC
ACTGCCTGCGTGTGATTTGGAGAAA

hide sequence

RefSeq Acc Id:

XM_017591562 ⟹ XP_017447051

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	99,003,987 - 99,030,193 (+)	NCBI
mRatBN7.2	3	78,558,085 - 78,574,736 (+)	NCBI
Rnor_6.0	3	81,451,620 - 81,512,829 (+)	NCBI

Sequence:

show sequence

TTTTTTTTTTTTTTTTTAGAAATCTGCCCTGTTATGGAGCAAGGCTGCCCATTTCATACCCAGG
GAGAGTGATCAAGGAGCAGGATGGGTGGGCGTTTCCTTAGTAAATCTCAGGCCTGCTTGATGCT
TCACAGTCTTTTCAGATGCGTTCTGAGTCATGATCCTGACCGGTGATATGAACTGTAGTTCTTT
ATTTTCTGCCATTATGTACAAGGAAGGGCGCTACCTTTATGCTTTGTTTTCCACCATTTAAACA
GGACATGGAGTGACATGGAGCCTGATGGAATATGGCCGGGGCGAATCACACAGCCACAGTCATC
TATTGTCCCACCACCCTGCACACACTCCCATTGGACATGAGTGTTATGAGAGGCGCATCACATC
AACAGAATTTCCCCATGGCTTCTGGTTCTTAGTCATCCAATCAAAACAGGAAGCCTCTCGGACG
GGCACTCCAGGCCACTTTGAGGAAGATTCCTGAGCAAGACTTCGGAAATGGCCCTTTATTTCTG
TCTCCTGGCCTTCCCCTGTGGATTCCTGCCTGTTAAAGGCAATGCCTATTCCTGCCTGCCTGTC
GCCCCTGCCTACAGAGAATGGTGCAGAAGTGCCTCCAACCTTCTCAAGCCCAGCTGAGGGCTTG
CTGCAAGGTGGAAGTGGGGACCGGAAGGTGTCAAACCCCTTGAGCAAGGGGGATGGTGAGAGAT
GCTGGAGGTGGACAGACAAGCAGCCATGGAGACATTCCCTCCAATTTATCCAGAAAGGGAACAC
ATCTGAAGTGGGTCAGAGGCAGAAGCAAAAAGCGTATGAGCCTGGTCTCTCAGGAAGCTACAGA
CTTGAAGCTAAATGCACCCCCGTGTAGCCTTAGGAGATCAGAAAAAGCATCTCCACTTTCCCTG
TGAGAAAACCGAGGCACAGAGGGGCTGCATCCTGGGGTCACACAGCAGACCCACAAGGGCTCCT
CTGCCCTGGGAAACTCCAGGAGACTTAAGAGATGGCGGAGACAGAAGCCCACTCCTTTGGACCA
TCACTTGGACGAAATCTACCACTGCCTACGGACAATCTCCTGTTCCGAGCTCTGCAACACACCT
ACGCATCTTCAGGTGGAAACAGGAAAAGACAACACTGTGGTGAGCGAGCCACCCGGGGCTAGCG
CCCCCGGGCCATGGAGAGGGGCCCGTGAGGGACGCGCGGAGGCGGAGGAAGAGGCTCGGGAGGA
GGGAGGCCGAGAAACAGGGCGCGGGAGGAGGAGGAGGAGGATGCCTCCGCCACCGCCACCACCA
CCCGCGGGCCCCCGGCGAGCCTGACTCCAGACCGAGGATGGAGCCGACGCTGGGCGCTGCAGCG
GCTCCGGGCGCGCAGGCCACCAGGTAACTGCTGTGTGTGCTGCATGTGGTTGGAAGAAGACCCC
TGTCCCCAGCTGTTCCTTTGGAGCGACCTTCTCTACCTGAAGGCCTGGGGTGAGCCACCTCCAT
CCCAGGACCAGCTGAGTTCCAGAAGACCCCGTGCCTTGGAGCAGCAGCCCCATGACGGTGCCCA
GCCATGCAATGTTCCTGGAAGGCTGTCCTCCTCCTCGCCCTGGCCTCCATTGCCATCCAGTACA
CAGCCATCCGCACATTCACTGCCAAGTCTTTCCACACTTGCCCTGGGCTGACAGAAACTGGGCT
GGCAGAGCGGCTGTGTGAGGAGGGCCCCACCTTCTCCTATAACCTCTCCAGAAAGACCCACGTC
CTCATCTTGGCCACCACACGCAGTGGTTCATCCTTTGTGGGCCAGCTCTTCAACCAGCACATGG
ATGTCTTCTACCTGTTTGAGCCTCTCTACCACGTCCAGAACACGCTCATCCCCCGCTTCACCCA
GGGCAAGAGCCCCGCCGACCGCAGGGTCATGCTAGGTGCCAGCCGGGACCTGCTGAGGAGCCTT
TATGATTGTGATCTCTACTTTCTGGAGAATTACATCAAGCCACCTCCGGTCAACCACACCACCG
ACCGGGTCTTCCGCCGAGGGGCCAGCAGGGTCCTCTGTTCCCGTCCTGTGTGTGACCCTCCTGG
GGCCTCTGACCTGATCCTGGAGGAGGGGGACTGTGTGCGTAAGTGCGGCTTGCTGAACCTGACC
TTGGCAGCTGAGGCTTGTCGTGAGCGCAGCCATGTGGCCATCAAGACTGTGCGGGTGCCTGAGG
TGAATGACTTGCGGGCCCTAGTGGAAGACCCCAGGTTGAATCTCAAGGTCATCCAGCTGGTGCG
AGACCCTCGTGGTATCTTAGCTTCTCGGAGTGAGACTTTCCGGGACACATACCGACTCTGGCGG
CTTTGGTACGGCACAGGGAGGAAGCCCTACAACCTGGACGTGACCCAGCTGACCACAGTGTGTG
AGGATTTCTCTAGCTCTGTGTCTACTGGCCTCATGCGGCCCTCCTGGCTCAAGGGCAAGTACAT
GTTGGTACGTTATGAGGACCTGGCCAGGAATCCAATGAAGAAGACAGAGGAGATCTACGAATTC
CTGGGTATCCCCCTGGACAGTCACGTGGCACGCTGGATCCAGAACAATACGAGGGGTGACCCCA
CTTTGGGCAAGCACAAATACGGCACAGTGCGCAACTCTGCAGCCACAGCTGAGAAGTGGCGCTT
CCGCCTCTCCTATGACATCGTGGCCTTTGCTCAGAACGCCTGCCAGCATGTGCTGGCACAGCTG
GGCTACAAGATGGCCACCTCGGAGGAGGAGCTGAAGAACCCAGCCATCAGCCTAGTGGAGGAGC
GCGACTTCCGCCCTTTTTTGTGACCTGGGTGTGGTGGGGGTGGGAGGCAGGTGGCTCTGGTTTT
GCTGATGTGGACCTACTACGGGCCGTTTTTTAACTGTTGCCTTATCTCTCTCCTCCCTCTCCCA
CCCTGTTTGTGTGTCCTTTCCACACAATCCCCCACCCCGGGTCTACTCCTCTCCCACGCCATCT
GCGCATCCTTCTTGCCCTTGTCCACTCCCTTTCCTCCTGCCTCTTTCTGCCCCTGAAATTTGCA
CTATGTCTCTGGAGGGGAACACTGGGCAGAGGGCGTGTGATGGGGGTTACAGCCCCCCACCCCA
TTTAGACACAAGGCTGCTGGGTCTCTATGCGGATGGGGACAATGTTTACAGGCACCCAGTCACA
CATTCACGTGTGCACACAGGCACACGACGAGAGGCACCCCAGCACATAGCTTGTAGTTTTTGCA
ATTGTCTTCTCCAGGTAATAGGATGGACACAAAGGGGCCACACCCCCCAGTTTAAGAAAAGAGT
CCATCCCAACCCCCTCCCTGCTCCTCCCCTGGAGCAGGGCACCCATCCCTCCTGCACACCCTTG
CCTGGTGGTGAGCAGGGTTTTACTGTGAGGTGAATTGGGATTACTTTCTTTCTATTTGGTTTGT
GGTGAGCTTGTCTGTCTGAGTCTTGTGTCTACCCCTAGACCAGTAATGGCTAATGAATCTTAGA
AATTTCTGATTGATCTTGGGGTCCCTCTGTGATATTTCTTTGTGCCAAAAAGATATAAAAAAAG
ACAAAAATATGTGAATCAGTTTGCTAAATGAAAATTGAAATGCTTTATTTGTGTTTTCTGTAAA
TAAAAATGTGCAGCACTGCCTGCGTGTGATTTGGAGAAA

hide sequence

RefSeq Acc Id:

XM_063283297 ⟹ XP_063139367

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	99,014,273 - 99,030,193 (+)	NCBI

RefSeq Acc Id:

XM_063283298 ⟹ XP_063139368

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	99,003,987 - 99,030,193 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011955	(Get FASTA)	NCBI Sequence Viewer
	XP_017447049	(Get FASTA)	NCBI Sequence Viewer
	XP_017447051	(Get FASTA)	NCBI Sequence Viewer
	XP_063139367	(Get FASTA)	NCBI Sequence Viewer
	XP_063139368	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86551	(Get FASTA)	NCBI Sequence Viewer
	EDL79580	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010510
	ENSRNOP00000010510.2
	ENSRNOP00000079857.1
	ENSRNOP00000081989.1
	ENSRNOP00000086161
	ENSRNOP00000086161.1
	ENSRNOP00000087464
	ENSRNOP00000087464.1
	ENSRNOP00000090213
	ENSRNOP00000090213.1
	ENSRNOP00000104653
GenBank Protein	Q5RJQ0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001011955 ⟸ NM_001011955

- UniProtKB:

Q5RJQ0 (UniProtKB/Swiss-Prot), A6HNH9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLTETGLAERLCEEGPTFSYNLSRKTHVL
ILATTRSGSSFVGQLFNQHMDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLY
DCDLYFLENYIKPPPVNHTTDRVFRRGASRVLCSRPVCDPPGASDLILEEGDCVRKCGLLNLTL
AAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRL
WYGTGRKPYNLDVTQLTTVCEDFSSSVSTGLMRPSWLKGKYMLVRYEDLARNPMKKTEEIYEFL
GIPLDSHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQHVLAQLG
YKMATSEEELKNPAISLVEERDFRPFL

hide sequence

RefSeq Acc Id:	XP_017447051 ⟸ XM_017591562
- Peptide Label:	isoform X1
- UniProtKB:	Q5RJQ0 (UniProtKB/Swiss-Prot), A6HNH9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLTETGLAERLCEEGPTFSYNLSRKTHVL ILATTRSGSSFVGQLFNQHMDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLY DCDLYFLENYIKPPPVNHTTDRVFRRGASRVLCSRPVCDPPGASDLILEEGDCVRKCGLLNLTL AAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRL WYGTGRKPYNLDVTQLTTVCEDFSSSVSTGLMRPSWLKGKYMLVRYEDLARNPMKKTEEIYEFL GIPLDSHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQHVLAQLG YKMATSEEELKNPAISLVEERDFRPFL hide sequence

RefSeq Acc Id:	XP_017447049 ⟸ XM_017591560
- Peptide Label:	isoform X1
- UniProtKB:	Q5RJQ0 (UniProtKB/Swiss-Prot), A6HNH9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLTETGLAERLCEEGPTFSYNLSRKTHVL ILATTRSGSSFVGQLFNQHMDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLY DCDLYFLENYIKPPPVNHTTDRVFRRGASRVLCSRPVCDPPGASDLILEEGDCVRKCGLLNLTL AAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRL WYGTGRKPYNLDVTQLTTVCEDFSSSVSTGLMRPSWLKGKYMLVRYEDLARNPMKKTEEIYEFL GIPLDSHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQHVLAQLG YKMATSEEELKNPAISLVEERDFRPFL hide sequence

Ensembl Acc Id:

ENSRNOP00000010510 ⟸ ENSRNOT00000010510

Ensembl Acc Id:

ENSRNOP00000090213 ⟸ ENSRNOT00000095049

Ensembl Acc Id:

ENSRNOP00000087464 ⟸ ENSRNOT00000098205

Ensembl Acc Id:

ENSRNOP00000079857 ⟸ ENSRNOT00000113200

Ensembl Acc Id:

ENSRNOP00000086161 ⟸ ENSRNOT00000114058

Ensembl Acc Id:

ENSRNOP00000081989 ⟸ ENSRNOT00000095051

RefSeq Acc Id:	XP_063139368 ⟸ XM_063283298
- Peptide Label:	isoform X1
- UniProtKB:	Q5RJQ0 (UniProtKB/Swiss-Prot), A6HNH9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139367 ⟸ XM_063283297
- Peptide Label:	isoform X1
- UniProtKB:	Q5RJQ0 (UniProtKB/Swiss-Prot), A6HNH9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100625 ⟸ ENSRNOT00000135051

Ensembl Acc Id:

ENSRNOP00000104653 ⟸ ENSRNOT00000165121

Ensembl Acc Id:

ENSRNOP00000108905 ⟸ ENSRNOT00000121918

Ensembl Acc Id:

ENSRNOP00000106031 ⟸ ENSRNOT00000123909

Protein Domains

Sulfotransferase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5RJQ0-F1-model_v2	AlphaFold	Q5RJQ0	1-411	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692227

Promoter ID:

EPDNEW_R2752

Type:

single initiation site

Name:

Chst1_1

Description:

carbohydrate sulfotransferase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	81,498,114 - 81,498,174	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308142	AgrOrtholog
BioCyc Gene	G2FUF-48687	BioCyc
Ensembl Genes	ENSRNOG00000007989	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000010510	ENTREZGENE
	ENSRNOT00000010510.6	UniProtKB/Swiss-Prot
	ENSRNOT00000095049	ENTREZGENE
	ENSRNOT00000095049.1	UniProtKB/Swiss-Prot
	ENSRNOT00000095051.1	UniProtKB/Swiss-Prot
	ENSRNOT00000098205	ENTREZGENE
	ENSRNOT00000098205.1	UniProtKB/Swiss-Prot
	ENSRNOT00000113200.1	UniProtKB/Swiss-Prot
	ENSRNOT00000114058	ENTREZGENE
	ENSRNOT00000114058.1	UniProtKB/Swiss-Prot
	ENSRNOT00000165121	ENTREZGENE
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7302418	IMAGE-MGC_LOAD
InterPro	Carbohydrate_sulfotransferase	UniProtKB/Swiss-Prot
	Gal/GlcNAc/GalNAc_ST	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	Sulfotransferase_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:295934	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105963	IMAGE-MGC_LOAD
NCBI Gene	295934	ENTREZGENE
PANTHER	CARBOHYDRATE SULFOTRANSFERASE	UniProtKB/Swiss-Prot
	CARBOHYDRATE SULFOTRANSFERASE 1	UniProtKB/Swiss-Prot
Pfam	Sulfotransfer_1	UniProtKB/Swiss-Prot
PhenoGen	Chst1	PhenoGen
PIRSF	Carbohydrate_sulfotransferase	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000007989	RatGTEx
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	A6HNH9	ENTREZGENE, UniProtKB/TrEMBL
	CHST1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-09	Chst1	carbohydrate sulfotransferase 1	Chst1	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Chst1	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	Chst1_predicted	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Chst1_predicted	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)