Btf3 (basic transcription factor 3) - Rat Genome Database

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Gene: Btf3 (basic transcription factor 3) Rattus norvegicus
Analyze
Symbol: Btf3 (Ensembl: Btf3-ps1)
Name: basic transcription factor 3 (Ensembl:basic transcription factor 3, pseudogene 1)
RGD ID: 1308095
Description: Predicted to be involved in negative regulation of protein localization to endoplasmic reticulum. Predicted to act upstream of or within in utero embryonic development. Predicted to be located in cytoplasm. Predicted to be part of nascent polypeptide-associated complex. Predicted to be active in cytosol. Orthologous to human BTF3 (basic transcription factor 3); INTERACTS WITH 2,4-dibromophenyl 2,4,5-tribromophenyl ether; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC294680; MGC106007; transcription factor BTF3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Btf3-ps1   Btf3-ps15  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8231,394,010 - 31,401,138 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl231,394,011 - 31,401,125 (-)EnsemblGRCr8
GRCr8 Ensembl1392,576,937 - 92,577,425 (+)EnsemblGRCr8
mRatBN7.2229,659,764 - 29,666,898 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1390,044,753 - 90,045,664 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl229,659,231 - 29,666,879 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx236,717,067 - 36,724,070 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0234,811,412 - 34,818,417 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0229,629,280 - 29,636,282 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0228,417,316 - 28,424,436 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl228,417,579 - 28,423,762 (-)Ensemblrn6Rnor6.0
Rnor_5.0247,518,638 - 47,525,734 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4228,900,451 - 28,907,561 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera225,697,785 - 25,704,544 (-)NCBICelera
RGSC_v3.1228,820,820 - 28,827,930 (-)NCBI
Cytogenetic Map2q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-naphthylamine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
aconitine  (EXP)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
amitrole  (EXP)
antimonite  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
casticin  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (EXP)
clotrimazole  (EXP)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
genistein  (ISO)
geraniol  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
methimazole  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nicotine  (ISO)
omeprazole  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (EXP)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (EXP,ISO)
quinoline  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
uranium atom  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7655515   PMID:12477932   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Btf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8231,394,010 - 31,401,138 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl231,394,011 - 31,401,125 (-)EnsemblGRCr8
GRCr8 Ensembl1392,576,937 - 92,577,425 (+)EnsemblGRCr8
mRatBN7.2229,659,764 - 29,666,898 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1390,044,753 - 90,045,664 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl229,659,231 - 29,666,879 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx236,717,067 - 36,724,070 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0234,811,412 - 34,818,417 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0229,629,280 - 29,636,282 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0228,417,316 - 28,424,436 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl228,417,579 - 28,423,762 (-)Ensemblrn6Rnor6.0
Rnor_5.0247,518,638 - 47,525,734 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4228,900,451 - 28,907,561 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera225,697,785 - 25,704,544 (-)NCBICelera
RGSC_v3.1228,820,820 - 28,827,930 (-)NCBI
Cytogenetic Map2q12NCBI
BTF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38573,498,442 - 73,505,667 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl573,498,408 - 73,505,667 (+)Ensemblhg38GRCh38
GRCh37572,794,267 - 72,801,492 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36572,830,006 - 72,837,204 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34572,830,032 - 72,837,080NCBI
Celera568,689,543 - 68,696,740 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef567,999,767 - 68,006,955 (+)NCBIHuRef
CHM1_1572,226,978 - 72,234,174 (+)NCBICHM1_1
T2T-CHM13v2.0573,979,765 - 73,986,989 (+)NCBIT2T-CHM13v2.0
Btf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391398,446,405 - 98,453,514 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1398,446,404 - 98,453,514 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381398,309,897 - 98,317,006 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1398,309,896 - 98,317,006 (-)Ensemblmm10GRCm38
MGSCv371399,079,852 - 99,086,961 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361399,410,054 - 99,417,124 (-)NCBIMGSCv36mm8
Celera13101,969,421 - 101,976,512 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1351.92NCBI
Btf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542527,098,857 - 27,105,488 (-)Ensembl
ChiLan1.0NW_00495542527,099,207 - 27,105,644 (-)NCBIChiLan1.0ChiLan1.0
BTF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2441,812,872 - 41,824,302 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1539,966,506 - 39,973,598 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0541,811,436 - 41,818,527 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1542,409,722 - 42,416,803 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl542,409,722 - 42,416,786 (-)EnsemblpanPan2panpan1.1
BTF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1256,341,885 - 56,345,653 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl256,338,626 - 56,354,716 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha253,313,913 - 53,321,900 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0256,860,193 - 56,868,358 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl256,860,188 - 56,868,496 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1253,920,585 - 53,928,622 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0254,688,509 - 54,696,548 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0255,579,801 - 55,587,831 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Btf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213187,785,219 - 187,792,332 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365493,066,641 - 3,073,744 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365493,066,182 - 3,073,898 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl282,660,495 - 82,668,374 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1282,660,470 - 82,668,385 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2284,262,050 - 84,269,832 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BTF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1467,863,062 - 67,870,152 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl467,863,034 - 67,869,895 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604916,633,340 - 16,640,461 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Btf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249241,525,888 - 1,532,085 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Btf3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13198,281,434 - 198,288,406 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Btf3
40 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:106
Interacting mature miRNAs:113
Transcripts:ENSRNOT00000022864, ENSRNOT00000071383
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000022864   ⟹   ENSRNOP00000022864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl231,394,011 - 31,400,955 (-)Ensembl
mRatBN7.2 Ensembl229,659,767 - 29,666,877 (-)Ensembl
Rnor_6.0 Ensembl228,417,579 - 28,423,762 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000042547   ⟹   ENSRNOP00000064698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1392,576,937 - 92,577,425 (+)Ensembl
mRatBN7.2 Ensembl1390,044,753 - 90,045,664 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100718   ⟹   ENSRNOP00000077666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl231,394,011 - 31,401,125 (-)Ensembl
mRatBN7.2 Ensembl229,659,231 - 29,666,879 (-)Ensembl
RefSeq Acc Id: NM_001008309   ⟹   NP_001008310
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,394,010 - 31,401,119 (-)NCBI
mRatBN7.2229,659,764 - 29,666,873 (-)NCBI
Rnor_6.0228,417,316 - 28,424,425 (-)NCBI
Rnor_5.0247,518,638 - 47,525,734 (-)NCBI
RGSC_v3.4228,900,451 - 28,907,561 (-)RGD
Celera225,697,785 - 25,704,544 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231835   ⟹   XP_006231897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,394,010 - 31,401,138 (-)NCBI
mRatBN7.2229,659,764 - 29,666,898 (-)NCBI
Rnor_6.0228,417,316 - 28,424,436 (-)NCBI
Rnor_5.0247,518,638 - 47,525,734 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001008310   ⟸   NM_001008309
- UniProtKB: Q5U3Y8 (UniProtKB/TrEMBL),   A6JGE1 (UniProtKB/TrEMBL),   M0R5M7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231897   ⟸   XM_006231835
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000022864   ⟸   ENSRNOT00000022864
Ensembl Acc Id: ENSRNOP00000077666   ⟸   ENSRNOT00000100718
Ensembl Acc Id: ENSRNOP00000064698   ⟸   ENSRNOT00000042547
Protein Domains
NAC-A/B

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U3Y8-F1-model_v2 AlphaFold Q5U3Y8 1-162 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308095 AgrOrtholog
BioCyc Gene G2FUF-54730 BioCyc
Ensembl Genes ENSRNOG00000016912 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000031864 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022864 ENTREZGENE
  ENSRNOT00000022864.7 UniProtKB/TrEMBL
  ENSRNOT00000042547.6 UniProtKB/TrEMBL
  ENSRNOT00000100718 ENTREZGENE
  ENSRNOT00000100718.2 UniProtKB/TrEMBL
Gene3D-CATH 2.20.70.30 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7303981 IMAGE-MGC_LOAD
InterPro BTF3 UniProtKB/TrEMBL
  NAC_A/B_dom_sf UniProtKB/TrEMBL
  Nas_poly-pep-assoc_cplx UniProtKB/TrEMBL
KEGG Report rno:294680 UniProtKB/TrEMBL
MGC_CLONE MGC:106007 IMAGE-MGC_LOAD
NCBI Gene 294680 ENTREZGENE
PANTHER PTHR10351 UniProtKB/TrEMBL
Pfam NAC UniProtKB/TrEMBL
PhenoGen Btf3 PhenoGen
PROSITE NAC_AB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016912 RatGTEx
  ENSRNOG00000031864 RatGTEx
SMART NAC UniProtKB/TrEMBL
UniProt A0A8I5Y6L8_RAT UniProtKB/TrEMBL
  A6I541 ENTREZGENE, UniProtKB/TrEMBL
  A6JGE1 ENTREZGENE, UniProtKB/TrEMBL
  F7EZE5 ENTREZGENE, UniProtKB/TrEMBL
  M0R5M7 ENTREZGENE, UniProtKB/TrEMBL
  Q5U3Y8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Btf3  basic transcription factor 3  Btf3_predicted  basic transcription factor 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Btf3_predicted  basic transcription factor 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED