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Gene: Arl11 (ARF like GTPase 11) Rattus norvegicus

Analyze

Symbol:

Arl11

Name:

ARF like GTPase 11 (Ensembl:ADP-ribosylation factor like GTPase 11)

RGD ID:

1308083

Description:

Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to act upstream of or within hematopoietic progenitor cell differentiation. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARL11 (ARF like GTPase 11); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ADP-ribosylation factor like GTPase 11; ADP-ribosylation factor-like 11; ADP-ribosylation factor-like protein 11; LOC364396; MGC108833

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARL11 (ARF like GTPase 11)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Arl11 (ADP-ribosylation factor-like 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arl11 (ARF like GTPase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARL11 (ARF like GTPase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arl11 (ARF like GTPase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARL11 (ARF like GTPase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARL11 (ARF like GTPase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arl11 (ARF like GTPase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Arl11 (ARF like GTPase 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ARL11 (ARF like GTPase 11)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arl11 (ADP-ribosylation factor-like 11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arl11 (ADP-ribosylation factor-like 11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arl11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17819	Alliance	DIOPT (OMA\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	39,659,404 - 39,661,651 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	39,656,050 - 39,664,105 (+)	Ensembl				GRCr8
mRatBN7.2	15	35,483,330 - 35,485,579 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	35,480,018 - 35,496,596 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	37,348,246 - 37,350,384 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	38,498,890 - 38,501,028 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	36,944,125 - 36,946,271 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	41,639,985 - 41,645,685 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	41,643,541 - 41,645,685 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	45,448,923 - 45,451,069 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	40,458,780 - 40,460,926 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	35,180,893 - 35,182,952 (+)	NCBI		Celera
RGSC_v3.1	15	40,474,479 - 40,476,626 (+)	NCBI
Cytogenetic Map	15	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Ovarian Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (EXP)

clothianidin (ISO)

cobalt dichloride (EXP)

Cuprizon (EXP)

diclofenac (ISO)

diuron (EXP)

ethyl methanesulfonate (ISO)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

L-methionine (ISO)

lidocaine (EXP)

lipopolysaccharide (ISO)

mechlorethamine (ISO)

Moniliformin (ISO)

N-nitrosodimethylamine (EXP)

oxaliplatin (EXP)

ozone (ISO)

phorone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (EXP,ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

Soman (EXP)

thioacetamide (EXP)

topotecan (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

tungsten (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hematopoietic progenitor cell differentiation (ISO)

intracellular protein transport (IBA)

vesicle-mediated transport (IBA)

Cellular Component

cytoplasm (IBA)

plasma membrane (IBA)

Molecular Function

GTP binding (IBA,IEA)

GTPase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:24029230

Genomics

Comparative Map Data

Arl11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	39,659,404 - 39,661,651 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	39,656,050 - 39,664,105 (+)	Ensembl				GRCr8
mRatBN7.2	15	35,483,330 - 35,485,579 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	35,480,018 - 35,496,596 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	37,348,246 - 37,350,384 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	38,498,890 - 38,501,028 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	36,944,125 - 36,946,271 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	41,639,985 - 41,645,685 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	41,643,541 - 41,645,685 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	45,448,923 - 45,451,069 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	40,458,780 - 40,460,926 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	35,180,893 - 35,182,952 (+)	NCBI		Celera
RGSC_v3.1	15	40,474,479 - 40,476,626 (+)	NCBI
Cytogenetic Map	15	p12	NCBI

ARL11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	49,628,507 - 49,633,872 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	49,628,464 - 49,634,842 (+)	Ensembl			hg38	GRCh38
GRCh37	13	50,202,643 - 50,208,008 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	49,100,625 - 49,105,732 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	13	49,100,435 - 49,106,009	NCBI
Celera	13	31,257,372 - 31,262,945 (+)	NCBI		Celera
Cytogenetic Map	13	q14.2	NCBI
HuRef	13	30,995,906 - 31,001,479 (+)	NCBI		HuRef
CHM1_1	13	50,169,956 - 50,175,529 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	48,847,427 - 48,852,792 (+)	NCBI		T2T-CHM13v2.0

Arl11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	61,543,740 - 61,549,386 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	61,547,202 - 61,549,385 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm39 Ensembl	14	61,542,858 - 61,551,618 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	61,306,290 - 61,311,937 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	61,309,753 - 61,311,936 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	61,928,590 - 61,930,773 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	60,263,863 - 60,266,046 (+)	NCBI		MGSCv36	mm8
Celera	14	59,078,077 - 59,080,081 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	32.66	NCBI

Arl11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	3,086,983 - 3,090,423 (+)	Ensembl
ChiLan1.0	NW_004955431	3,086,983 - 3,090,423 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARL11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	51,067,071 - 51,071,028 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	49,718,749 - 49,722,670 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	30,767,431 - 30,770,962 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	49,516,084 - 49,519,462 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	49,518,030 - 49,518,620 (+)	Ensembl			panPan2	panpan1.1

Arl11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	159,201,892 - 159,204,115 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936565	2,686,783 - 2,687,377 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARL11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	18,095,974 - 18,099,819 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	11	18,097,723 - 18,100,425 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	18,412,359 - 18,414,343 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARL11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	27,544,990 - 27,550,306 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	27,547,359 - 27,547,949 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666057	16,333,716 - 16,338,843 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arl11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	5,023,391 - 5,025,131 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624748	5,023,391 - 5,025,389 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Arl11
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	63,101,725 - 63,102,715 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Arl11
3 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	357
Count of miRNA genes:	200
Interacting mature miRNAs:	226
Transcripts:	ENSRNOT00000019646
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	31855803	92671517	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	22728353	42072050	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28527732	73527732	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	22336351	52597086	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat

Markers in Region

RH133399

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	35,485,394 - 35,485,544 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	41,645,501 - 41,645,650	NCBI	Rnor6.0
Rnor_5.0	15	45,450,885 - 45,451,034	UniSTS	Rnor5.0
RGSC_v3.4	15	40,460,742 - 40,460,891	UniSTS	RGSC3.4
Celera	15	35,182,768 - 35,182,917	UniSTS
RH 3.4 Map	15	227.6	UniSTS
Cytogenetic Map	15	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	89	59	6	351	189	11	139	79	92	31	13	13

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019646 ⟹ ENSRNOP00000019646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	39,656,050 - 39,661,647 (+)	Ensembl
mRatBN7.2 Ensembl	15	35,480,966 - 35,485,646 (+)	Ensembl
Rnor_6.0 Ensembl	15	41,643,541 - 41,645,685 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118171 ⟹ ENSRNOP00000096153

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	39,656,070 - 39,661,647 (+)	Ensembl
mRatBN7.2 Ensembl	15	35,480,018 - 35,496,596 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000146172 ⟹ ENSRNOP00000101260

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	39,658,992 - 39,664,105 (+)	Ensembl

RefSeq Acc Id:

NM_001013433 ⟹ NP_001013451

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	39,659,505 - 39,661,651 (+)	NCBI
mRatBN7.2	15	35,483,433 - 35,485,579 (+)	NCBI
Rnor_6.0	15	41,643,541 - 41,645,685 (+)	NCBI
Rnor_5.0	15	45,448,923 - 45,451,069 (+)	NCBI
RGSC_v3.4	15	40,458,780 - 40,460,926 (+)	RGD
Celera	15	35,180,893 - 35,182,952 (+)	RGD

Sequence:

show sequence

TGCAACAGCCTCTACACTTCCTTCATGGCCTGCTCTTGGGCCGTGGCGACAAGCAGAAAGAAGC
TTGATTGTGGAGAGGTGCCCTAGCGGAGGGATGTCTGCCACAGTCCAGGCACCCCACAGAGGAG
CTCCATGTACGAGTGGCTTTGCATTTCTTCAGAAAAGAATAGCTGATGTGCAATCTCAGCCTTT
CTGCAGAAGGATTTATCAGGGGCCAGCATGGGCTCTGTGAATTCTAGAGGCCATAAGGCCCAGG
TGGTAATGCTGGGCCTCGACTGTGCTGGCAAGACCACAATCCTGTACAAACTGAAAGGAAACCG
GCTGGTGGATACCCTACCCACTGTTGGTTTTAATGTAGAGCCTCTTGAGGCTCCTGGACATGTG
TCGCTGACTCTCTGGGACATTGGGGGACAGACCCAGCTCAGGGCTACGTGGAAGGACTACCTGG
AAGGCATTGACCTCCTTGTGTACGTGCTGGACAGCACAGATGAAGCCCGCTTGCCCGAGGCAGT
GGCTGAGCTCGAGGAAGTCCTAGAAGACCCCAACATGGCTGGTGTTCCTTTCTTGGTACTGGCC
AACAAGCAGGAGGCTCCTGATGCTCTACCATTGCTTGAAATCAGAAACAGGCTGGACCTGGAAA
GGTTCCAAGACCATTGCTGGGAGCTGCGGGCTTGCAGCGCTCTCACAGGTCAGGGGCTACAGGA
AGCCCGGCAGAGCCTGCTGCATTTGCTGAGATCCTGATGAAATGCAGTAACCTCTAACTCCAGG
CTGGAGCAGGACAGGGAGCAGGGTCAGCCAGACCCCCTGAGCAGGCAAATAGATTATCCTTGCT
TCTAAGAACAGGAGGGGCCAGCTGATCCTTGAGAAAGTGAAGCTCCGTTTGCCACATGAGAAAC
CACGTTTCTCTTGGACGGTGTGTTTTCTTCTCAGGACTTCTTCTCAGTGGCGGTTATGCGGAAA
ATCAACTGTTCTTCAAGTAACAATCGTCAGAGGGAATATAAAAACCCTCAGAATACCCCCATGT
AACAGCTCAGTACCAAGTGTCAAAGTCACAAACTTGGTGACATAATTATTGATGACCAAGTTCA
CAAATGAAAAGAGGTTTCAAAACTACATCTGAGTGTCACTGGGCCTATCGCTGTTATCCGAGTG
TCACTGGGCCTATCATTGTCATCCGAGTGTCACCAGGCCTATCACGGTCATCTGCCTGTCACTG
GGCCTATCACAGTCATCAGGAGCGACTCTTCCTACTGGCCTTGGGGCAGAAGCCACTGTCACTG
GTGGGCTCACAGCAGGAGGGGCAGGTCTGCTCTCATAATGCTGCAGAAGGCAGAAGTCCATGGG
GCCCTAGATCCTCCCAGAATTCCCCCTGATCTCCAACTCTGACTAACTCTTTTCTGCCCTATAT
CCTCTGTTGTAAAAAAGTAAAATAAAACTCCTCTTATACTCTCCTTTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017599762 ⟹ XP_017455251

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	39,659,404 - 39,661,647 (+)	NCBI
mRatBN7.2	15	35,483,330 - 35,485,575 (+)	NCBI
Rnor_6.0	15	41,643,037 - 41,645,681 (+)	NCBI

Sequence:

show sequence

TGTGTGTGTGCGTGTGTGTATGCACGAGTGCATGTGTACGGTCGTGGTTCTAGCAGAGCCTTTT
TATGAGCACTTACGAGTCACACATGCACAAGATCTGCTCCTTTATGTACCTATTAATTGTTAAT
TCATTGTTTCCTCCTCCTTTTCTAGTTTGGGCTTGACAAGTCACTCCATTTTGATCCTGACAAG
CTTCACGGCTTTGCAAATCAGAGAACCTCCACGCACCAGAAAAACCACTGCTGCCTGTGCTGGG
TGGCCTGTGTTTCAGAATTCCCAGGGAGATCAAAGGAGTTGAGGAAAGCAAAAGAAAGCAGCTA
AGGGTGGCAGGACTCTGCACTTGTGAGTTCCCTCAGACCACGGGGCTCAGCTGCTATAAATGAG
CCTTGGTGCTGGGTGGGGCTCCACTACCAACAGGAGAGCAGAGATGTCTTGAGGCACACCCCCA
ATATAAGAGGATGTCTGCCCTAACCACTCAAGAGAGGAAGCAAAAACAGGACAGATTGCAACAG
CCTCTACACTTCCTTCATGGCCTGCTCTTGGGCCGTGGCGACAAGCAGAAAGAAGCTTGATTGT
GGAGAGGTGCCCTAGCGGAGGGATGTCTGCCACAGTCCAGGCACCCCACAGAGGGTAGGAGCTC
CATGTACGAGTGGCTTTGCATTTCTTCAGAAAAGAATAGCTGATGTGCAATCTCAGCCTTTCTG
CAGAAGGATTTATCAGGGGCCAGCATGGGCTCTGTGAATTCTAGAGGCCATAAGGCCCAGGTGG
TAATGCTGGGCCTCGACTGTGCTGGCAAGACCACAATCCTGTACAAACTGAAAGGAAACCGGCT
GGTGGATACCCTACCCACTGTTGGTTTTAATGTAGAGCCTCTTGAGGCTCCTGGACATGTGTCG
CTGACTCTCTGGGACATTGGGGGACAGACCCAGCTCAGGGCTACGTGGAAGGACTACCTGGAAG
GCATTGACCTCCTTGTGTACGTGCTGGACAGCACAGATGAAGCCCGCTTGCCCGAGGCAGTGGC
TGAGCTCGAGGAAGTCCTAGAAGACCCCAACATGGCTGGTGTTCCTTTCTTGGTACTGGCCAAC
AAGCAGGAGGCTCCTGATGCTCTACCATTGCTTGAAATCAGAAACAGGCTGGACCTGGAAAGGT
TCCAAGACCATTGCTGGGAGCTGCGGGCTTGCAGCGCTCTCACAGGTCAGGGGCTACAGGAAGC
CCGGCAGAGCCTGCTGCATTTGCTGAGATCCTGATGAAATGCAGTAACCTCTAACTCCAGGCTG
GAGCAGGACAGGGAGCAGGGTCAGCCAGACCCCCTGAGCAGGCAAATAGATTATCCTTGCTTCT
AAGAACAGGAGGGGCCAGCTGATCCTTGAGAAAGTGAAGCTCCGTTTGCCACATGAGAAACCAC
GTTTCTCTTGGACGGTGTGTTTTCTTCTCAGGACTTCTTCTCAGTGGCGGTTATGCGGAAAATC
AACTGTTCTTCAAGTAACAATCGTCAGAGGGAATATAAAAACCCTCAGAATACCCCCATGTAAC
AGCTCAGTACCAAGTGTCAAAGTCACAAACTTGGTGACATAATTATTGATGACCAAGTTCACAA
ATGAAAAGAGGTTTCAAAACTACATCTGAGTGTCACTGGGCCTATCGCTGTTATCCGAGTGTCA
CTGGGCCTATCATTGTCATCCGAGTGTCACCAGGCCTATCACGGTCATCTGCCTGTCACTGGGC
CTATCACAGTCATCAGGAGCGACTCTTCCTACTGGCCTTGGGGCAGAAGCCACTGTCACTGGTG
GGCTCACAGCAGGAGGGGCAGGTCTGCTCTCATAATGCTGCAGAAGGCAGAAGTCCATGGGGCC
CTAGATCCTCCCAGAATTCCCCCTGATCTCCAACTCTGACTAACTCTTTTCTGCCCTATATCCT
CTGTTGTAAAAAAGTAAAATAAAACTCCTCTTATACTCTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001013451	(Get FASTA)	NCBI Sequence Viewer
	NP_001418519	(Get FASTA)	NCBI Sequence Viewer
	XP_017455251	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91183	(Get FASTA)	NCBI Sequence Viewer
	EDL85275	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019646.2
	ENSRNOP00000096153
	ENSRNOP00000096153.1
GenBank Protein	Q5BK71	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001013451 ⟸ NM_001013433
- UniProtKB:	Q5BK71 (UniProtKB/Swiss-Prot), A6K6B5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSVNSRGHKAQVVMLGLDCAGKTTILYKLKGNRLVDTLPTVGFNVEPLEAPGHVSLTLWDIGG QTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNMAGVPFLVLANKQEAPDAL PLLEIRNRLDLERFQDHCWELRACSALTGQGLQEARQSLLHLLRS hide sequence

RefSeq Acc Id:	XP_017455251 ⟸ XM_017599762
- Peptide Label:	isoform X1
- Sequence:	show sequence MGSVNSRGHKAQVVMLGLDCAGKTTILYKLKGNRLVDTLPTVGFNVEPLEAPGHVSLTLWDIGG QTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNMAGVPFLVLANKQEAPDAL PLLEIRNRLDLERFQDHCWELRACSALTGQGLQEARQSLLHLLRS hide sequence

Ensembl Acc Id:

ENSRNOP00000019646 ⟸ ENSRNOT00000019646

Ensembl Acc Id:

ENSRNOP00000096153 ⟸ ENSRNOT00000118171

Ensembl Acc Id:

ENSRNOP00000101260 ⟸ ENSRNOT00000146172

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5BK71-F1-model_v2	AlphaFold	Q5BK71	1-173	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699742

Promoter ID:

EPDNEW_R10265

Type:

initiation region

Name:

Arl11_1

Description:

ADP-ribosylation factor like GTPase 11

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	41,643,514 - 41,643,574	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308083	AgrOrtholog
BioCyc Gene	G2FUF-13506	BioCyc
Ensembl Genes	ENSRNOG00000014653	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000019646.4	UniProtKB/Swiss-Prot
	ENSRNOT00000118171	ENTREZGENE
	ENSRNOT00000118171.1	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7365828	IMAGE-MGC_LOAD
InterPro	P-loop_NTPase	UniProtKB/Swiss-Prot
	Small_GTP-bd_dom	UniProtKB/Swiss-Prot
	Small_GTPase_ARF	UniProtKB/Swiss-Prot
	Small_GTPase_ARF/SAR	UniProtKB/Swiss-Prot
KEGG Report	rno:364396	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:108833	IMAGE-MGC_LOAD
NCBI Gene	364396	ENTREZGENE
PANTHER	PTHR11711	UniProtKB/Swiss-Prot
Pfam	Arf	UniProtKB/Swiss-Prot
PhenoGen	Arl11	PhenoGen
PRINTS	SAR1GTPBP	UniProtKB/Swiss-Prot
PROSITE	ARF	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000014653	RatGTEx
SMART	ARF	UniProtKB/Swiss-Prot
	SAR	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	A6K6B5	ENTREZGENE, UniProtKB/TrEMBL
	ARL11_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-11-07	Arl11	ARF like GTPase 11	Arl11	ADP-ribosylation factor like GTPase 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-12-09	Arl11	ADP-ribosylation factor like GTPase 11	Arl11	ADP-ribosylation factor-like 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Arl11	ADP-ribosylation factor-like 11	Arl11_predicted	ADP-ribosylation factor-like 11 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Arl11_predicted	ADP-ribosylation factor-like 11 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD