Ccdc159 (coiled-coil domain containing 159) - Rat Genome Database

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Gene: Ccdc159 (coiled-coil domain containing 159) Rattus norvegicus
Analyze
Symbol: Ccdc159
Name: coiled-coil domain containing 159
RGD ID: 1308031
Description: Predicted to be involved in spermatid development. Predicted to act upstream of or within gene expression; single fertilization; and sperm flagellum assembly. Predicted to be active in sperm head-tail coupling apparatus. Orthologous to human CCDC159 (coiled-coil domain containing 159); INTERACTS WITH (+)-schisandrin B; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 159; coiled-coil domain-containing-like; LOC300442; MGC109537; RGD1308031; similar to RIKEN cDNA 2510048L02
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,733,988 - 28,742,646 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl828,725,003 - 28,744,890 (+)EnsemblGRCr8
mRatBN7.2820,457,905 - 20,467,232 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,457,909 - 20,466,562 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx824,488,729 - 24,496,952 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,784,286 - 22,792,508 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,687,523 - 20,695,751 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,937,962 - 22,946,648 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,937,916 - 22,946,358 (+)Ensemblrn6Rnor6.0
Rnor_5.0822,992,832 - 23,001,431 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4821,030,088 - 21,038,281 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera821,849,114 - 21,857,800 (+)NCBICelera
RGSC_v3.1821,030,087 - 21,038,281 (+)NCBI
Cytogenetic Map8q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Ccdc159
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,733,988 - 28,742,646 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl828,725,003 - 28,744,890 (+)EnsemblGRCr8
mRatBN7.2820,457,905 - 20,467,232 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,457,909 - 20,466,562 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx824,488,729 - 24,496,952 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,784,286 - 22,792,508 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,687,523 - 20,695,751 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,937,962 - 22,946,648 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,937,916 - 22,946,358 (+)Ensemblrn6Rnor6.0
Rnor_5.0822,992,832 - 23,001,431 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4821,030,088 - 21,038,281 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera821,849,114 - 21,857,800 (+)NCBICelera
RGSC_v3.1821,030,087 - 21,038,281 (+)NCBI
Cytogenetic Map8q13NCBI
CCDC159
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,346,519 - 11,354,944 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,344,684 - 11,354,944 (+)Ensemblhg38GRCh38
GRCh371911,457,195 - 11,465,620 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,318,334 - 11,327,053 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1911,352,055 - 11,360,494 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,033,232 - 11,041,671 (+)NCBIHuRef
CHM1_11911,458,203 - 11,466,642 (+)NCBICHM1_1
T2T-CHM13v2.01911,473,497 - 11,481,922 (+)NCBIT2T-CHM13v2.0
Ccdc159
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,838,767 - 21,847,168 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,838,767 - 21,847,168 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38921,927,471 - 21,935,872 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,927,471 - 21,935,872 (+)Ensemblmm10GRCm38
MGSCv37921,731,915 - 21,740,316 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36921,677,873 - 21,686,274 (+)NCBIMGSCv36mm8
Celera919,196,704 - 19,205,105 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.92NCBI
Ccdc159
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,263,465 - 2,269,876 (+)Ensembl
ChiLan1.0NW_0049554952,263,350 - 2,270,043 (+)NCBIChiLan1.0ChiLan1.0
CCDC159
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,260,509 - 16,268,956 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,259,190 - 15,267,682 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,893,751 - 10,902,271 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,604,405 - 11,612,516 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,604,405 - 11,612,516 (+)EnsemblpanPan2panpan1.1
CCDC159
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,964,345 - 49,970,461 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,964,350 - 49,970,400 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2049,837,854 - 49,843,976 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02050,485,064 - 50,491,189 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.12049,695,349 - 49,701,477 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,121,724 - 50,127,846 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,364,681 - 50,370,804 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc159
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,904,953 - 208,910,737 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,445,530 - 1,449,522 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,443,999 - 1,450,285 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC159
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,039,977 - 70,047,792 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1270,039,954 - 70,060,456 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,403,110 - 70,410,212 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC159
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,280,282 - 10,289,141 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl610,282,605 - 10,289,625 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660749,604,777 - 9,613,576 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc159
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248283,152,829 - 3,158,874 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccdc159
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1818,177,990 - 18,186,681 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccdc159
84 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:40
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000049993
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8132882639Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat

Markers in Region
RH138339  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2820,464,827 - 20,465,880 (+)MAPPERmRatBN7.2
Rnor_6.0822,944,909 - 22,945,961NCBIRnor6.0
Rnor_5.0822,999,693 - 23,000,745UniSTSRnor5.0
RGSC_v3.4821,036,968 - 21,038,020UniSTSRGSC3.4
Celera821,856,061 - 21,857,113UniSTS
RH 3.4 Map8181.4UniSTS
Cytogenetic Map8q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 91 59 6 355 191 11 139 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001371565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003750449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003754378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC128932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC088314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000049993   ⟹   ENSRNOP00000040215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl828,725,003 - 28,742,226 (+)Ensembl
mRatBN7.2 Ensembl820,457,909 - 20,466,143 (+)Ensembl
Rnor_6.0 Ensembl822,938,029 - 22,946,222 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088255   ⟹   ENSRNOP00000068788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl828,734,031 - 28,744,890 (+)Ensembl
mRatBN7.2 Ensembl820,457,909 - 20,466,141 (+)Ensembl
Rnor_6.0 Ensembl822,937,916 - 22,946,358 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120153   ⟹   ENSRNOP00000087027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl828,734,088 - 28,742,637 (+)Ensembl
mRatBN7.2 Ensembl820,457,940 - 20,466,562 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000153865   ⟹   ENSRNOP00000101495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl828,733,915 - 28,742,638 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000159553   ⟹   ENSRNOP00000104118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl828,733,915 - 28,742,638 (+)Ensembl
RefSeq Acc Id: NM_001371565   ⟹   NP_001358494
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,733,989 - 28,742,221 (+)NCBI
mRatBN7.2820,457,909 - 20,466,141 (+)NCBI
RefSeq Acc Id: XM_006242678   ⟹   XP_006242740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,733,988 - 28,742,646 (+)NCBI
mRatBN7.2820,457,908 - 20,466,569 (+)NCBI
Rnor_6.0822,937,962 - 22,946,648 (+)NCBI
Rnor_5.0822,992,832 - 23,001,431 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242679   ⟹   XP_006242741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,733,992 - 28,742,646 (+)NCBI
mRatBN7.2820,457,910 - 20,466,569 (+)NCBI
Rnor_6.0822,937,962 - 22,946,648 (+)NCBI
Rnor_5.0822,992,832 - 23,001,431 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242680   ⟹   XP_006242742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,733,988 - 28,742,646 (+)NCBI
mRatBN7.2820,457,908 - 20,466,569 (+)NCBI
Rnor_6.0822,937,962 - 22,946,648 (+)NCBI
Rnor_5.0822,992,832 - 23,001,431 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242681   ⟹   XP_006242743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,733,992 - 28,742,646 (+)NCBI
mRatBN7.2820,457,910 - 20,466,569 (+)NCBI
Rnor_6.0822,937,962 - 22,946,648 (+)NCBI
Rnor_5.0822,992,832 - 23,001,431 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242686   ⟹   XP_006242748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,734,030 - 28,742,646 (+)NCBI
mRatBN7.2820,457,942 - 20,466,569 (+)NCBI
Rnor_6.0822,937,962 - 22,946,648 (+)NCBI
Rnor_5.0822,992,832 - 23,001,431 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081005   ⟹   XP_038936933
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,734,235 - 28,742,646 (+)NCBI
mRatBN7.2820,458,051 - 20,466,569 (+)NCBI
RefSeq Acc Id: XM_039081006   ⟹   XP_038936934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,734,235 - 28,742,646 (+)NCBI
mRatBN7.2820,458,051 - 20,466,569 (+)NCBI
RefSeq Acc Id: XM_039081007   ⟹   XP_038936935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,734,022 - 28,742,646 (+)NCBI
mRatBN7.2820,457,910 - 20,466,569 (+)NCBI
RefSeq Acc Id: XM_063265047   ⟹   XP_063121117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,733,992 - 28,742,646 (+)NCBI
RefSeq Acc Id: XM_063265048   ⟹   XP_063121118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,733,988 - 28,742,646 (+)NCBI
RefSeq Acc Id: XM_063265049   ⟹   XP_063121119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,733,992 - 28,742,646 (+)NCBI
RefSeq Acc Id: XM_063265050   ⟹   XP_063121120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,734,029 - 28,742,646 (+)NCBI
RefSeq Acc Id: XM_063265051   ⟹   XP_063121121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,734,017 - 28,742,646 (+)NCBI
RefSeq Acc Id: XM_063265052   ⟹   XP_063121122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,736,076 - 28,742,646 (+)NCBI
RefSeq Acc Id: XP_006242742   ⟸   XM_006242680
- Peptide Label: isoform X3
- UniProtKB: F7FD89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242743   ⟸   XM_006242681
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006242748   ⟸   XM_006242686
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006242740   ⟸   XM_006242678
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006242741   ⟸   XM_006242679
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000040215   ⟸   ENSRNOT00000049993
Ensembl Acc Id: ENSRNOP00000068788   ⟸   ENSRNOT00000088255
RefSeq Acc Id: NP_001358494   ⟸   NM_001371565
- UniProtKB: A0A0G2JTP2 (UniProtKB/TrEMBL),   A6JNW0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936935   ⟸   XM_039081007
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038936934   ⟸   XM_039081006
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038936933   ⟸   XM_039081005
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000087027   ⟸   ENSRNOT00000120153
RefSeq Acc Id: XP_063121118   ⟸   XM_063265048
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063121117   ⟸   XM_063265047
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063121119   ⟸   XM_063265049
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063121121   ⟸   XM_063265051
- Peptide Label: isoform X12
- UniProtKB: A0A8I6A3K5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121120   ⟸   XM_063265050
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063121122   ⟸   XM_063265052
- Peptide Label: isoform X13
- UniProtKB: Q5M816 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104118   ⟸   ENSRNOT00000159553
Ensembl Acc Id: ENSRNOP00000101495   ⟸   ENSRNOT00000153865

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTP2-F1-model_v2 AlphaFold A0A0G2JTP2 1-396 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695798
Promoter ID:EPDNEW_R6318
Type:multiple initiation site
Name:Ccdc159_1
Description:coiled-coil domain containing 159
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0822,938,009 - 22,938,069EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308031 AgrOrtholog
BioCyc Gene G2FUF-31402 BioCyc
Ensembl Genes ENSRNOG00000011799 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049993 ENTREZGENE
  ENSRNOT00000049993.5 UniProtKB/TrEMBL
  ENSRNOT00000088255 ENTREZGENE
  ENSRNOT00000088255.3 UniProtKB/TrEMBL
  ENSRNOT00000120153 ENTREZGENE
  ENSRNOT00000120153.2 UniProtKB/TrEMBL
  ENSRNOT00000153865 ENTREZGENE
  ENSRNOT00000153865.1 UniProtKB/TrEMBL
  ENSRNOT00000159553 ENTREZGENE
  ENSRNOT00000159553.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7324729 IMAGE-MGC_LOAD
InterPro CCDC159 UniProtKB/TrEMBL
MGC_CLONE MGC:109537 IMAGE-MGC_LOAD
NCBI Gene 300442 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 159 UniProtKB/TrEMBL
  PTHR34533 UniProtKB/TrEMBL
PhenoGen Ccdc159 PhenoGen
RatGTEx ENSRNOG00000011799 RatGTEx
UniProt A0A0G2JTP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A3K5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LAN5_RAT UniProtKB/TrEMBL
  A0ABK0LKQ2_RAT UniProtKB/TrEMBL
  A6JNW0 ENTREZGENE, UniProtKB/TrEMBL
  F7FD89 ENTREZGENE, UniProtKB/TrEMBL
  Q5M816 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Ccdc159  coiled-coil domain containing 159  RGD1308031  coiled-coil domain-containing-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-01-22 RGD1308031  coiled-coil domain-containing-like  RGD1308031  similar to RIKEN cDNA 2510048L02  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1308031  similar to RIKEN cDNA 2510048L02  RGD1308031_predicted  similar to RIKEN cDNA 2510048L02 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308031_predicted  similar to RIKEN cDNA 2510048L02 (predicted)  LOC300442_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC300442_predicted  similar to RIKEN cDNA 2510048L02 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL