Cldn10 (claudin 10) - Rat Genome Database

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Gene: Cldn10 (claudin 10) Rattus norvegicus
Analyze
Symbol: Cldn10
Name: claudin 10
RGD ID: 1308027
Description: Predicted to enable identical protein binding activity and paracellular tight junction channel activity. Predicted to be involved in several processes, including bicellular tight junction assembly; paracellular transport; and regulation of monoatomic ion transport. Predicted to be located in endoplasmic reticulum and tight junction. Predicted to be active in bicellular tight junction and plasma membrane. Orthologous to human CLDN10 (claudin 10); PARTICIPATES IN hepatitis C pathway; INTERACTS WITH 17beta-estradiol 3-benzoate; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: claudin-10; LOC290485
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815102,269,858 - 102,361,589 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl15102,269,858 - 102,361,589 (+)EnsemblGRCr8
mRatBN7.21595,862,785 - 95,954,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1595,862,760 - 95,954,526 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1599,772,662 - 99,864,437 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.015100,904,544 - 100,996,422 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01597,833,337 - 97,925,219 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.015104,026,590 - 104,115,748 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,026,601 - 104,115,748 (+)Ensemblrn6Rnor6.0
Rnor_5.015107,450,003 - 107,539,150 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.415103,699,243 - 103,793,405 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1594,712,975 - 94,804,609 (+)NCBICelera
RGSC_v3.115103,769,474 - 103,809,184 (+)NCBI
Cytogenetic Map15q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
8'-apo-beta,psi-caroten-8'-al  (ISO)
aflatoxin B1  (ISO)
ammonium acetate  (EXP)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
beta-carotene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
naphthalene  (ISO)
nickel atom  (ISO)
oxaliplatin  (EXP)
perfluorohexanesulfonic acid  (ISO)
permethrin  (EXP)
quercetin  (ISO)
quercitrin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
tetracycline  (ISO)
titanium dioxide  (EXP,ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16520537   PMID:18036336   PMID:18757308   PMID:28686597   PMID:28771254  


Genomics

Comparative Map Data
Cldn10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815102,269,858 - 102,361,589 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl15102,269,858 - 102,361,589 (+)EnsemblGRCr8
mRatBN7.21595,862,785 - 95,954,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1595,862,760 - 95,954,526 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1599,772,662 - 99,864,437 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.015100,904,544 - 100,996,422 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01597,833,337 - 97,925,219 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.015104,026,590 - 104,115,748 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,026,601 - 104,115,748 (+)Ensemblrn6Rnor6.0
Rnor_5.015107,450,003 - 107,539,150 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.415103,699,243 - 103,793,405 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1594,712,975 - 94,804,609 (+)NCBICelera
RGSC_v3.115103,769,474 - 103,809,184 (+)NCBI
Cytogenetic Map15q24NCBI
CLDN10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381395,433,755 - 95,579,759 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1395,433,604 - 95,579,759 (+)Ensemblhg38GRCh38
GRCh371396,086,009 - 96,232,013 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361394,883,859 - 95,029,907 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341394,883,858 - 95,029,907NCBI
Celera1376,933,662 - 77,079,797 (+)NCBICelera
Cytogenetic Map13q32.1NCBI
HuRef1376,683,603 - 76,829,764 (+)NCBIHuRef
CHM1_11396,056,017 - 96,202,145 (+)NCBICHM1_1
T2T-CHM13v2.01394,638,308 - 94,784,309 (+)NCBIT2T-CHM13v2.0
Cldn10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,025,283 - 119,111,937 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14119,025,320 - 119,112,901 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3814118,787,871 - 118,874,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,787,908 - 118,875,489 (+)Ensemblmm10GRCm38
MGSCv3714119,187,093 - 119,273,747 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3614117,701,416 - 117,788,616 (-)NCBIMGSCv36mm8
Celera14117,349,989 - 117,436,610 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1462.55NCBI
Cldn10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,483,217 - 14,597,938 (-)Ensembl
ChiLan1.0NW_00495540414,483,217 - 14,597,912 (-)NCBIChiLan1.0ChiLan1.0
CLDN10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21496,965,336 - 97,110,530 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11395,634,199 - 95,779,399 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01376,728,572 - 76,755,685 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11395,763,745 - 95,909,161 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1395,763,980 - 95,909,161 (+)EnsemblpanPan2panpan1.1
CLDN10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12246,098,671 - 46,225,239 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2246,098,933 - 46,225,153 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2245,882,250 - 46,009,455 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02246,526,400 - 46,653,623 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2246,627,780 - 46,653,447 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12246,190,438 - 46,316,829 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02246,223,654 - 46,350,727 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02246,230,094 - 46,356,645 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cldn10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945181,723,167 - 181,745,660 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647214,207,681 - 14,308,932 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647214,205,311 - 14,308,932 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,121,607 - 65,145,072 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11165,027,706 - 65,145,002 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21171,983,331 - 72,006,790 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,239,087 - 74,379,699 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl374,352,400 - 74,377,978 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604630,664,874 - 30,806,787 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cldn10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,179,142 - 2,298,924 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248792,178,896 - 2,298,905 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cldn10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1127,040,685 - 7,130,615 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:53
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000013520
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1560213984105213984Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1582194914108192169Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1574735564106469153Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1588677086104695021Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1582503470108192169Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1582714037106778197Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)1588677086104695021Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1564571127108192169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
7411646Foco21Food consumption QTL 2123.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1584278281108192169Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)1561710951106710951Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)1583700787108192169Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1559257087104257087Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1567399137108192169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1582194914108192169Rat

Markers in Region
D15Got91  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21595,933,137 - 95,933,345 (+)MAPPERmRatBN7.2
Rnor_6.015104,094,198 - 104,094,405NCBIRnor6.0
Rnor_5.015107,517,600 - 107,517,807UniSTSRnor5.0
RGSC_v3.415103,772,017 - 103,772,225RGDRGSC3.4
RGSC_v3.415103,772,018 - 103,772,225UniSTSRGSC3.4
Celera1594,783,231 - 94,783,430UniSTS
RGSC_v3.115103,787,798 - 103,788,005RGD
RH 3.4 Map15664.1UniSTS
RH 3.4 Map15664.1RGD
RH 2.0 Map15577.2RGD
Cytogenetic Map15q24UniSTS
D15Got95  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21595,933,187 - 95,933,350 (+)MAPPERmRatBN7.2
Rnor_6.015104,094,248 - 104,094,410NCBIRnor6.0
Rnor_5.015107,517,650 - 107,517,812UniSTSRnor5.0
RGSC_v3.415103,772,067 - 103,772,230RGDRGSC3.4
RGSC_v3.415103,772,068 - 103,772,230UniSTSRGSC3.4
Celera1594,783,281 - 94,783,435UniSTS
RGSC_v3.115103,787,848 - 103,788,010RGD
RH 3.4 Map15676.3UniSTS
RH 3.4 Map15676.3RGD
RH 2.0 Map15589.6RGD
Cytogenetic Map15q24UniSTS
RH129792  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21595,954,193 - 95,954,373 (+)MAPPERmRatBN7.2
Rnor_6.015104,115,416 - 104,115,595NCBIRnor6.0
Rnor_5.015107,538,818 - 107,538,997UniSTSRnor5.0
RGSC_v3.415103,793,073 - 103,793,252UniSTSRGSC3.4
Celera1594,804,277 - 94,804,456UniSTS
RH 3.4 Map15667.5UniSTS
Cytogenetic Map15q24UniSTS
RH142393  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21595,954,177 - 95,954,373 (+)MAPPERmRatBN7.2
Rnor_6.015104,115,400 - 104,115,595NCBIRnor6.0
Rnor_5.015107,538,802 - 107,538,997UniSTSRnor5.0
RGSC_v3.415103,793,057 - 103,793,252UniSTSRGSC3.4
Celera1594,804,261 - 94,804,456UniSTS
RH 3.4 Map15654.5UniSTS
Cytogenetic Map15q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 9 53 145 77 76 45 87 45 6 314 168 8 121 81 88 31 11 11

Sequence


Ensembl Acc Id: ENSRNOT00000013520   ⟹   ENSRNOP00000013520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15102,269,858 - 102,361,589 (+)Ensembl
mRatBN7.2 Ensembl1595,862,785 - 95,954,526 (+)Ensembl
Rnor_6.0 Ensembl15104,026,601 - 104,115,748 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083269   ⟹   ENSRNOP00000070015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15102,270,107 - 102,361,589 (+)Ensembl
mRatBN7.2 Ensembl1595,862,760 - 95,954,526 (+)Ensembl
Rnor_6.0 Ensembl15104,026,602 - 104,115,745 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093403   ⟹   ENSRNOP00000076157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15102,269,858 - 102,361,244 (+)Ensembl
mRatBN7.2 Ensembl1595,862,760 - 95,954,305 (+)Ensembl
Rnor_6.0 Ensembl15104,026,612 - 104,115,745 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093487   ⟹   ENSRNOP00000076076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl15104,095,179 - 104,115,748 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000127877   ⟹   ENSRNOP00000112835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15102,270,107 - 102,361,368 (+)Ensembl
RefSeq Acc Id: NM_001106058   ⟹   NP_001099528
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,269,858 - 102,361,589 (+)NCBI
mRatBN7.21595,862,785 - 95,954,526 (+)NCBI
Rnor_6.015104,026,601 - 104,115,748 (+)NCBI
Rnor_5.015107,450,003 - 107,539,150 (+)NCBI
RGSC_v3.415103,699,243 - 103,793,405 (+)RGD
Celera1594,712,975 - 94,804,609 (+)RGD
Sequence:
RefSeq Acc Id: XM_063274174   ⟹   XP_063130244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,340,149 - 102,361,586 (+)NCBI
RefSeq Acc Id: NP_001099528   ⟸   NM_001106058
- UniProtKB: G3V7A9 (UniProtKB/TrEMBL),   A6HUG9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000076076   ⟸   ENSRNOT00000093487
Ensembl Acc Id: ENSRNOP00000076157   ⟸   ENSRNOT00000093403
Ensembl Acc Id: ENSRNOP00000070015   ⟸   ENSRNOT00000083269
Ensembl Acc Id: ENSRNOP00000013520   ⟸   ENSRNOT00000013520
RefSeq Acc Id: XP_063130244   ⟸   XM_063274174
- Peptide Label: isoform X1
- UniProtKB: B0BNH7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112835   ⟸   ENSRNOT00000127877

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V7A9-F1-model_v2 AlphaFold G3V7A9 1-286 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699874
Promoter ID:EPDNEW_R10396
Type:multiple initiation site
Name:Cldn10_1
Description:claudin 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015104,095,165 - 104,095,225EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308027 AgrOrtholog
BioCyc Gene G2FUF-12433 BioCyc
Ensembl Genes ENSRNOG00000010085 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013520 ENTREZGENE
  ENSRNOT00000013520.6 UniProtKB/TrEMBL
  ENSRNOT00000083269.4 UniProtKB/TrEMBL
  ENSRNOT00000093403.3 UniProtKB/TrEMBL
  ENSRNOT00000127877.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7378907 IMAGE-MGC_LOAD
InterPro Claudin UniProtKB/TrEMBL
  Claudin10 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
KEGG Report rno:290485 UniProtKB/TrEMBL
MGC_CLONE MGC:188274 IMAGE-MGC_LOAD
NCBI Gene 290485 ENTREZGENE
PANTHER Claudin UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PhenoGen Cldn10 PhenoGen
PRINTS CLAUDIN UniProtKB/TrEMBL
  CLAUDIN10 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010085 RatGTEx
UniProt A0A0G2JWU2_RAT UniProtKB/TrEMBL
  A0A1W2Q674_RAT UniProtKB/TrEMBL
  A0ABK0M5X4_RAT UniProtKB/TrEMBL
  A6HUG8_RAT UniProtKB/TrEMBL
  A6HUG9 ENTREZGENE, UniProtKB/TrEMBL
  B0BNH7 ENTREZGENE, UniProtKB/TrEMBL
  G3V7A9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Cldn10  claudin 10   Cldn10_predicted  claudin 10 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cldn10_predicted  claudin 10 (predicted)      Symbol and Name status set to approved 70820 APPROVED