Tom1 (target of myb1 membrane trafficking protein)

Gene: Tom1 (target of myb1 membrane trafficking protein) Rattus norvegicus

Analyze

Symbol:

Tom1

Name:

target of myb1 membrane trafficking protein

RGD ID:

1308024

Description:

Predicted to enable several functions, including clathrin heavy chain binding activity; phosphatidylinositol-5-phosphate binding activity; and ubiquitin binding activity. Predicted to be involved in several processes, including endosomal transport; macroautophagy; and regulation of organelle organization. Predicted to be located in cytosol; early endosome; and endosome membrane. Predicted to be active in endosome and membrane. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human TOM1 (target of myb1 membrane trafficking protein); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC361370; MGC95142; target of Myb protein 1; target of myb1 (chicken); target of myb1 homolog; target of myb1 homolog (chicken)

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TOM1 (target of myb1 membrane trafficking protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Tom1 (target of myb1 trafficking protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tom1 (target of myb1 membrane trafficking protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TOM1 (target of myb1 membrane trafficking protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TOM1 (target of myb1 membrane trafficking protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tom1 (target of myb1 membrane trafficking protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TOM1 (target of myb1 membrane trafficking protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TOM1 (target of myb1 membrane trafficking protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tom1 (target of myb1 membrane trafficking protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GJA3 (gap junction protein alpha 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TOM1 (target of myb1 membrane trafficking protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tom1 (target of myb1 trafficking protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tom1 (target of myb1 membrane trafficking protein)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	GGA1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C07A12.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3529	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GGA2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tom1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	13,411,227 - 13,446,129 (+)	NCBI		GRCr8
mRatBN7.2	19	13,405,482 - 13,440,384 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	13,405,501 - 13,440,384 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	13,379,786 - 13,413,732 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	14,145,055 - 14,179,001 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	13,425,894 - 13,459,953 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	14,392,405 - 14,426,482 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	14,392,423 - 14,426,491 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	25,504,964 - 25,539,013 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	13,890,549 - 13,925,393 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	13,895,374 - 13,930,219 (+)	NCBI
Celera	19	13,274,916 - 13,309,316 (+)	NCBI		Celera
Cytogenetic Map	19	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Immunodeficiency 85 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

caffeine (ISO)

capsaicin (EXP)

CGP 52608 (ISO)

clofibrate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP,ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydrogen cyanide (ISO)

hydrogen peroxide (ISO)

inulin (ISO)

ivermectin (ISO)

menadione (ISO)

methotrexate (ISO)

monosodium L-glutamate (ISO)

nickel sulfate (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium cyanide (ISO)

potassium dichromate (ISO)

raloxifene (ISO)

SB 431542 (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

valdecoxib (EXP)

vinclozolin (EXP)

zinc atom (EXP)

zinc(0) (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagosome-lysosome fusion (ISO)

endosomal transport (ISO)

positive regulation of autophagosome maturation (ISO)

protein transport (IEA)

regulation of endosome organization (ISO)

signal transduction (IBA)

substrate localization to autophagosome (ISO)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

early endosome (ISO)

endosome (IBA,ISO)

endosome membrane (ISO)

membrane (IBA,ISO)

Molecular Function

clathrin binding (IBA,ISO)

clathrin heavy chain binding (ISO)

myosin VI binding (ISO)

phosphatidylinositol-5-phosphate binding (ISO)

polyubiquitin modification-dependent protein binding (ISO)

protein binding (ISO)

ubiquitin binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14613930	PMID:16412388	PMID:16903783	PMID:19056867	PMID:19198660	PMID:23533145

Genomics

Comparative Map Data

Tom1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	13,411,227 - 13,446,129 (+)	NCBI		GRCr8
mRatBN7.2	19	13,405,482 - 13,440,384 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	13,405,501 - 13,440,384 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	13,379,786 - 13,413,732 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	14,145,055 - 14,179,001 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	13,425,894 - 13,459,953 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	14,392,405 - 14,426,482 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	14,392,423 - 14,426,491 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	25,504,964 - 25,539,013 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	13,890,549 - 13,925,393 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	13,895,374 - 13,930,219 (+)	NCBI
Celera	19	13,274,916 - 13,309,316 (+)	NCBI		Celera
Cytogenetic Map	19	p11	NCBI

TOM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	35,299,275 - 35,347,973 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	35,299,275 - 35,347,992 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	35,695,268 - 35,743,966 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	34,025,861 - 34,073,973 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	34,020,414 - 34,068,527	NCBI
Celera	22	19,497,943 - 19,546,669 (+)	NCBI		Celera
Cytogenetic Map	22	q12.3	NCBI
HuRef	22	18,656,369 - 18,704,501 (+)	NCBI		HuRef
CHM1_1	22	35,653,446 - 35,702,167 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	35,757,154 - 35,805,980 (+)	NCBI		T2T-CHM13v2.0

Tom1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	75,760,326 - 75,796,749 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	75,760,333 - 75,796,749 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	75,033,642 - 75,070,121 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	75,033,705 - 75,070,121 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	77,557,585 - 77,594,020 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	77,929,781 - 77,966,183 (+)	NCBI		MGSCv36	mm8
Celera	8	79,333,738 - 79,377,348 (+)	NCBI		Celera
Cytogenetic Map	8	C1	NCBI
cM Map	8	35.57	NCBI

Tom1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	43,091,633 - 43,115,016 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	43,091,632 - 43,115,016 (+)	NCBI	ChiLan1.0	ChiLan1.0

TOM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	45,240,374 - 45,289,422 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	47,937,030 - 47,986,070 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	16,306,575 - 16,355,442 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	34,150,256 - 34,198,939 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	34,150,256 - 34,198,939 (+)	Ensembl	panpan1.1		panPan2

TOM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	28,782,910 - 28,822,634 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	28,775,300 - 28,822,570 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	28,719,265 - 28,758,930 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	29,569,574 - 29,609,250 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	29,562,184 - 29,609,208 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	29,293,163 - 29,332,825 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	29,601,983 - 29,641,623 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	29,781,678 - 29,821,336 (-)	NCBI		UU_Cfam_GSD_1.0

Tom1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	12,062,860 - 12,093,325 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	5,073,191 - 5,103,739 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	5,073,274 - 5,103,733 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TOM1
(Sus scrofa - pig)

No map positions available.

TOM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	18,062,890 - 18,110,306 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	18,062,948 - 18,111,585 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	107,839,944 - 107,886,455 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tom1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	357,222 - 379,356 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	359,130 - 379,454 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tom1
215 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	122
Count of miRNA genes:	75
Interacting mature miRNAs:	94
Transcripts:	ENSRNOT00000018880
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24688055	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27355345	Rat
631678	Cm9	Cardiac mass QTL 9	4.27	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	19	1	28982497	Rat
631681	Cm12	Cardiac mass QTL 12	3.33	0.00053	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	19	1	28982497	Rat
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31963836	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	36824771	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	36824771	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	36824771	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	36824771	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
724565	Tcas5	Tongue tumor susceptibility QTL 5	10.04		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	19	9977753	39654489	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10323180	23069265	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10827970	43544039	Rat

Markers in Region

RH133352

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	13,440,110 - 13,440,328 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	14,426,209 - 14,426,426	NCBI	Rnor6.0
Rnor_5.0	19	25,538,740 - 25,538,957	UniSTS	Rnor5.0
RGSC_v3.4	19	13,925,121 - 13,925,338	UniSTS	RGSC3.4
Celera	19	13,309,044 - 13,309,261	UniSTS
RH 3.4 Map	19	134.78	UniSTS
Cytogenetic Map	19	p11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	56	41	18	41	8	11	74	35	41	11	8
Low			1		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000018880 ⟹ ENSRNOP00000018880

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	13,405,501 - 13,440,384 (+)	Ensembl
Rnor_6.0 Ensembl	19	14,392,423 - 14,426,491 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108363 ⟹ ENSRNOP00000089787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	13,405,520 - 13,440,381 (+)	Ensembl

RefSeq Acc Id:

NM_001008365 ⟹ NP_001008366

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	13,411,244 - 13,446,129 (+)	NCBI
mRatBN7.2	19	13,405,501 - 13,440,384 (+)	NCBI
Rnor_6.0	19	14,392,477 - 14,426,481 (+)	NCBI
Rnor_5.0	19	25,504,964 - 25,539,013 (+)	NCBI
RGSC_v3.4	19	13,890,549 - 13,925,393 (+)	RGD
Celera	19	13,274,916 - 13,309,316 (+)	RGD

Sequence:

show sequence

CTGGGAGCTGGTGGCAGTGGTAGCCGCGGCAATGGACTTTCTCCTGGGAAACCCGTTCAGTTCT
CCCGTGGGACAGCGGATCGAGAAAGCTACAGATGGCTCCCTGCAGAGCGAGGACTGGGCCCTCA
ACATGGAGATCTGTGACATCATCAATGAGACCGAGGAAGGCCCCAAAGATGCCTTCCGAGCAGT
GAAGAAGCGAATTGTGGGGAATAAGAATTTCCATGAGGTCATGCTGGCCCTTACGGTCTTGGAA
ACTTGTGTTAAGAACTGCGGGCACCGCTTCCATGTCCTGGTGGCCAGCCAGGACTTTGTAGAGA
ATGTGCTGGTGAGGACCATCCTGCCGAAGAACAATCCACCCACCATCGTGCATGACAAGGTGTT
GAACCTCATCCAGTCCTGGGCAGACGCATTCCGCAGCTCACCTGATTTGACAGGTGTTGTTGCT
GTCTACGAGGACCTGCGAAGGAAGGGCCTAGAATTTCCCATGACTGACCTGGACATGCTGTCGC
CCATCCATACACCCCAGAGAACTGTATTCAACTCAGAGACACCATCCAGACAGAACCCCGTGGT
CTCCAACAGCAGTCATCGCGGAGACCTGAGCCAGCATGCCACCCCACTGCCCACTCCAGCTGTT
CTCCCTGGTGATTCACCCATCACACCAACTCCTGAGCAGATTGGGAAGCTGCGCAGTGAGCTGG
AGATGGTGAACGGAAATGTTCGAGTGATGTCAGAGATGCTGACAGAGCTGGTGCCCACCCAGGT
AGAGCCCGCAGACCTGGAGCTACTACAGGAACTCAACCGCACCTGCCGCGCCATGCAGCAACGG
ATCCTGGAGCTTATCCCACGCATCTCCAACGAGCAGCTGACAGAGGAGCTTCTCATGATCAATG
ACAACCTCAACAATGTGTTTCTGCGCCATGAACGGTTTGAACGCTTCCGAACAGGCCAGACTGC
CAAGGCCTCCGGTGAAGCTGAGCTAGCAGCTGACCTGATTGACATGGGCCCTGACCCCGCAGCC
ACCAGCAACCTCTCATCCCAACTGGCAGGAGTGGACCTTGGCTCCAGCAGGGTGAGGGCTGGCC
TGCAGTCTCTGGAAGCGTCTGGTCACCTGGAAGATGACTTTGACATGTTTGCTCTGACTCGGGG
CAGCTCCCTGGCTGATCAACGGAAAGGGGTCAAATACGAGGCTCCCCAAACCACAGATGGCCTG
GCTGGGGCCCTGGATGCCCGGCAGCAGAGCACCGGGGCGATCCCGGCCACACAGGCCCGCATCA
TGGAGGACATTGAGCAGTGGCTGTCCACCGATGTGGGGAGCAGTGCTGAGGAGCCCTCTGGTGT
CACCAGTGAAGAATTTGACAAATTCCTGGAAGAAAGAGCCAAAGCTGCCGATCGACTTCCCAAC
CTGGCCAGCCCTTCAGCCGAGGGACCCCCCAGACCGTGTCCTGGAGCAGCCCCTCGGAGGAAGA
CGCAGGAGAAGGATGATGATGTGCTGTTTGCCTTATGAACGCAGCCCAGCCCAGGGCCTGACTC
TCTACCCGCTGGGCCTCCCTCCCTTGGCATTAAGGCTGCTTAGGGGTGTTTCGTTACCCCGCTT
CTCTTCTCCCAGAGCCTGGGCAGCAGTGGGATGAACTGAGGAACAAGTCAACCCTCCACTGGGA
TCCTGACTGGTTCTGCCTTCTTCCCATCCTGCTACCGACTATGACTTTACTGAGACCTGGGGCC
CCAGACGAGCTGACCTGATGCGACCTAATTGACCTGGTGTAAGGCTGCTTCCATGGAATTCCCC
TGCTCCCTTCCCCAGAGAAGCCCACAGGAGCCCTTCAGAATCTACACTACCAGTCTAGGCATTA
GAGAAGACATCACCACAGCCTGGCCTATCCCATCCCCCTGCAGAGTGGAGCCTGAAGAGGGCTT
TAGTGGCTTATTAGGAAGGGCAATGGTGGCCCCTGCTGAGCTGCCCACTGTCCAGGTACGAAGC
TGCACCCAGTGAGGAAAGACCTCACTGCCCAGGTGTCAAGATGAGACCTCGGGGATTCTGGGTG
CCCAGAGCCCCCAGTTCCTCCACTGCCTTTCCCCTATCCTTGCTTTGTTCCTCCAGCAAGGGCT
CCACCCACCTGGGGCTCATCTGTTGATTGATGAGTCCTCAGGTACAGGGAGAGGTGCCTTTTGT
ATCCCCAAATAAAAGTAGAAAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

hide sequence

RefSeq Acc Id:

XM_006255145 ⟹ XP_006255207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	13,411,227 - 13,446,129 (+)	NCBI
mRatBN7.2	19	13,405,482 - 13,440,384 (+)	NCBI
Rnor_6.0	19	14,392,405 - 14,426,482 (+)	NCBI
Rnor_5.0	19	25,504,964 - 25,539,013 (+)	NCBI

Sequence:

show sequence

GGCACCTCCCCGCGGGCCGGCCAGCGGGTCACGTGACGGGTCGGCGGCGCCGGCGGTTGCTGTC
ACCTGATTCTGGGAGCTGGTGGCAGTGGTAGCCGCGGCAATGGACTTTCTCCTGGGAAACCCGT
TCAGTTCTCCCGTGGGACAGCGGATCGAGAAAGCTACAGATGGCTCCCTGCAGAGCGAGGACTG
GGCCCTCAACATGGAGATCTGTGACATCATCAATGAGACCGAGGAAGGCCCCAAAGATGCCTTC
CGAGCAGTGAAGAAGCGAATTGTGGGGAATAAGAATTTCCATGAGGTCATGCTGGCCCTTACGG
TCTTGGAAACTTGTGTTAAGAACTGCGGGCACCGCTTCCATGTCCTGGTGGCCAGCCAGGACTT
TGTAGAGAATGTGCTGGTGAGGACCATCCTGCCGAAGAACAATCCACCCACCATCGTGCATGAC
AAGTCCTGGGCAGACGCATTCCGCAGCTCACCTGATTTGACAGGTGTTGTTGCTGTCTACGAGG
ACCTGCGAAGGAAGGGCCTAGAATTTCCCATGACTGACCTGGACATGCTGTCGCCCATCCATAC
ACCCCAGAGAACTGTATTCAACTCAGAGACACCATCCAGACAGAACCCCGTGGTCTCCAACAGC
AGTCATCGCGGAGACCTGAGCCAGCATGCCACCCCACTGCCCACTCCAGCTGTTCTCCCTGGTG
ATTCACCCATCACACCAACTCCTGAGCAGATTGGGAAGCTGCGCAGTGAGCTGGAGATGGTGAA
CGGAAATGTTCGAGTGATGTCAGAGATGCTGACAGAGCTGGTGCCCACCCAGGTAGAGCCCGCA
GACCTGGAGCTACTACAGGAACTCAACCGCACCTGCCGCGCCATGCAGCAACGGATCCTGGAGC
TTATCCCACGCATCTCCAACGAGCAGCTGACAGAGGAGCTTCTCATGATCAATGACAACCTCAA
CAATGTGTTTCTGCGCCATGAACGGTTTGAACGCTTCCGAACAGGCCAGACTGCCAAGGCCTCC
GGTGAAGCTGAGCTAGCAGCTGACCTGATTGACATGGGCCCTGACCCCGCAGCCACCAGCAACC
TCTCATCCCAACTGGCAGGAGTGGACCTTGGCTCCAGCAGGGTGAGGGCTGGCCTGCAGTCTCT
GGAAGCGTCTGGTCACCTGGAAGATGACTTTGACATGTTTGCTCTGACTCGGGGCAGCTCCCTG
GCTGATCAACGGAAAGGGGTCAAATACGAGGCTCCCCAAACCACAGATGGCCTGGCTGGGGCCC
TGGATGCCCGGCAGCAGAGCACCGGGGCGATCCCGGCCACACAGGCCCGCATCATGGAGGACAT
TGAGCAGTGGCTGTCCACCGATGTGGGGAGCAGTGCTGAGGAGCCCTCTGGTGTCACCAGTGAA
GAATTTGACAAATTCCTGGAAGAAAGAGCCAAAGCTGCCGATCGACTTCCCAACCTGGCCAGCC
CTTCAGCCGAGGGACCCCCCAGACCGTGTCCTGGAGCAGCCCCTCGGAGGAAGACGCAGGAGAA
GGATGATGATGTGCTGTTTGCCTTATGAACGCAGCCCAGCCCAGGGCCTGACTCTCTACCCGCT
GGGCCTCCCTCCCTTGGCATTAAGGCTGCTTAGGGGTGTTTCGTTACCCCGCTTCTCTTCTCCC
AGAGCCTGGGCAGCAGTGGGATGAACTGAGGAACAAGTCAACCCTCCACTGGGATCCTGACTGG
TTCTGCCTTCTTCCCATCCTGCTACCGACTATGACTTTACTGAGACCTGGGGCCCCAGACGAGC
TGACCTGATGCGACCTAATTGACCTGGTGTAAGGCTGCTTCCATGGAATTCCCCTGCTCCCTTC
CCCAGAGAAGCCCACAGGAGCCCTTCAGAATCTACACTACCAGTCTAGGCATTAGAGAAGACAT
CACCACAGCCTGGCCTATCCCATCCCCCTGCAGAGTGGAGCCTGAAGAGGGCTTTAGTGGCTTA
TTAGGAAGGGCAATGGTGGCCCCTGCTGAGCTGCCCACTGTCCAGGTACGAAGCTGCACCCAGT
GAGGAAAGACCTCACTGCCCAGGTGTCAAGATGAGACCTCGGGGATTCTGGGTGCCCAGAGCCC
CCAGTTCCTCCACTGCCTTTCCCCTATCCTTGCTTTGTTCCTCCAGCAAGGGCTCCACCCACCT
GGGGCTCATCTGTTGATTGATGAGTCCTCAGGTACAGGGAGAGGTGCCTTTTGTATCCCCAAAT
AAAAGTAGAAAACCA

hide sequence

RefSeq Acc Id:

XM_017601310 ⟹ XP_017456799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	13,411,229 - 13,446,129 (+)	NCBI
mRatBN7.2	19	13,405,486 - 13,440,384 (+)	NCBI
Rnor_6.0	19	14,392,466 - 14,426,482 (+)	NCBI

Sequence:

show sequence

GTCACCTGATTCTGGGAGCTGGTGGCAGTGGTAGCCGCGGCAATGGACTTTCTCCTGGGAAACC
CGTTCAGTTCTCCCGTGGGACAGCGGATCGTTTCTTCACAGAGAAAGCTACAGATGGCTCCCTG
CAGAGCGAGGACTGGGCCCTCAACATGGAGATCTGTGACATCATCAATGAGACCGAGGAAGGCC
CCAAAGATGCCTTCCGAGCAGTGAAGAAGCGAATTGTGGGGAATAAGAATTTCCATGAGGTCAT
GCTGGCCCTTACGGTCTTGGAAACTTGTGTTAAGAACTGCGGGCACCGCTTCCATGTCCTGGTG
GCCAGCCAGGACTTTGTAGAGAATGTGCTGGTGAGGACCATCCTGCCGAAGAACAATCCACCCA
CCATCGTGCATGACAAGGTGTTGAACCTCATCCAGTCCTGGGCAGACGCATTCCGCAGCTCACC
TGATTTGACAGGTGTTGTTGCTGTCTACGAGGACCTGCGAAGGAAGGGCCTAGAATTTCCCATG
ACTGACCTGGACATGCTGTCGCCCATCCATACACCCCAGAGAACTGTATTCAACTCAGAGACAC
CATCCAGACAGAACCCCGTGGTCTCCAACAGCAGTCATCGCGGAGACCTGAGCCAGCATGCCAC
CCCACTGCCCACTCCAGCTGTTCTCCCTGGTGATTCACCCATCACACCAACTCCTGAGCAGATT
GGGAAGCTGCGCAGTGAGCTGGAGATGGTGAACGGAAATGTTCGAGTGATGTCAGAGATGCTGA
CAGAGCTGGTGCCCACCCAGGTAGAGCCCGCAGACCTGGAGCTACTACAGGAACTCAACCGCAC
CTGCCGCGCCATGCAGCAACGGATCCTGGAGCTTATCCCACGCATCTCCAACGAGCAGCTGACA
GAGGAGCTTCTCATGATCAATGACAACCTCAACAATGTGTTTCTGCGCCATGAACGGTTTGAAC
GCTTCCGAACAGGCCAGACTGCCAAGGCCTCCGGTGAAGCTGAGCTAGCAGCTGACCTGATTGA
CATGGGCCCTGACCCCGCAGCCACCAGCAACCTCTCATCCCAACTGGCAGGAGTGGACCTTGGC
TCCAGCAGGGTGAGGGCTGGCCTGCAGTCTCTGGAAGCGTCTGGTCACCTGGAAGATGACTTTG
ACATGTTTGCTCTGACTCGGGGCAGCTCCCTGGCTGATCAACGGAAAGGGGTCAAATACGAGGC
TCCCCAAACCACAGATGGCCTGGCTGGGGCCCTGGATGCCCGGCAGCAGAGCACCGGGGCGATC
CCGGCCACACAGGCCCGCATCATGGAGGACATTGAGCAGTGGCTGTCCACCGATGTGGGGAGCA
GTGCTGAGGAGCCCTCTGGTGTCACCAGTGAAGAATTTGACAAATTCCTGGAAGAAAGAGCCAA
AGCTGCCGATCGACTTCCCAACCTGGCCAGCCCTTCAGCCGAGGGACCCCCCAGACCGTGTCCT
GGAGCAGCCCCTCGGAGGAAGACGCAGGAGAAGGATGATGATGTGCTGTTTGCCTTATGAACGC
AGCCCAGCCCAGGGCCTGACTCTCTACCCGCTGGGCCTCCCTCCCTTGGCATTAAGGCTGCTTA
GGGGTGTTTCGTTACCCCGCTTCTCTTCTCCCAGAGCCTGGGCAGCAGTGGGATGAACTGAGGA
ACAAGTCAACCCTCCACTGGGATCCTGACTGGTTCTGCCTTCTTCCCATCCTGCTACCGACTAT
GACTTTACTGAGACCTGGGGCCCCAGACGAGCTGACCTGATGCGACCTAATTGACCTGGTGTAA
GGCTGCTTCCATGGAATTCCCCTGCTCCCTTCCCCAGAGAAGCCCACAGGAGCCCTTCAGAATC
TACACTACCAGTCTAGGCATTAGAGAAGACATCACCACAGCCTGGCCTATCCCATCCCCCTGCA
GAGTGGAGCCTGAAGAGGGCTTTAGTGGCTTATTAGGAAGGGCAATGGTGGCCCCTGCTGAGCT
GCCCACTGTCCAGGTACGAAGCTGCACCCAGTGAGGAAAGACCTCACTGCCCAGGTGTCAAGAT
GAGACCTCGGGGATTCTGGGTGCCCAGAGCCCCCAGTTCCTCCACTGCCTTTCCCCTATCCTTG
CTTTGTTCCTCCAGCAAGGGCTCCACCCACCTGGGGCTCATCTGTTGATTGATGAGTCCTCAGG
TACAGGGAGAGGTGCCTTTTGTATCCCCAAATAAAAGTAGAAAACCA

hide sequence

RefSeq Acc Id:

XM_039097811 ⟹ XP_038953739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	13,411,328 - 13,446,129 (+)	NCBI
mRatBN7.2	19	13,405,566 - 13,440,384 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001008366	(Get FASTA)	NCBI Sequence Viewer
	XP_006255207	(Get FASTA)	NCBI Sequence Viewer
	XP_017456799	(Get FASTA)	NCBI Sequence Viewer
	XP_038953739	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83873	(Get FASTA)	NCBI Sequence Viewer
	EDL87372	(Get FASTA)	NCBI Sequence Viewer
	EDL87373	(Get FASTA)	NCBI Sequence Viewer
	EDL87374	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018880
	ENSRNOP00000018880.4
	ENSRNOP00000089787.1

RefSeq Acc Id:

NP_001008366 ⟸ NM_001008365

- UniProtKB:

Q5XI21 (UniProtKB/TrEMBL), F7EYC4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDFLLGNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIVGNKNF
HEVMLALTVLETCVKNCGHRFHVLVASQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWADAF
RSSPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETPSRQNPVVSNSSHRGDLS
QHATPLPTPAVLPGDSPITPTPEQIGKLRSELEMVNGNVRVMSEMLTELVPTQVEPADLELLQE
LNRTCRAMQQRILELIPRISNEQLTEELLMINDNLNNVFLRHERFERFRTGQTAKASGEAELAA
DLIDMGPDPAATSNLSSQLAGVDLGSSRVRAGLQSLEASGHLEDDFDMFALTRGSSLADQRKGV
KYEAPQTTDGLAGALDARQQSTGAIPATQARIMEDIEQWLSTDVGSSAEEPSGVTSEEFDKFLE
ERAKAADRLPNLASPSAEGPPRPCPGAAPRRKTQEKDDDVLFAL

hide sequence

RefSeq Acc Id:	XP_006255207 ⟸ XM_006255145
- Peptide Label:	isoform X1
- UniProtKB:	F7EYC4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDFLLGNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIVGNKNF HEVMLALTVLETCVKNCGHRFHVLVASQDFVENVLVRTILPKNNPPTIVHDKSWADAFRSSPDL TGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETPSRQNPVVSNSSHRGDLSQHATPL PTPAVLPGDSPITPTPEQIGKLRSELEMVNGNVRVMSEMLTELVPTQVEPADLELLQELNRTCR AMQQRILELIPRISNEQLTEELLMINDNLNNVFLRHERFERFRTGQTAKASGEAELAADLIDMG PDPAATSNLSSQLAGVDLGSSRVRAGLQSLEASGHLEDDFDMFALTRGSSLADQRKGVKYEAPQ TTDGLAGALDARQQSTGAIPATQARIMEDIEQWLSTDVGSSAEEPSGVTSEEFDKFLEERAKAA DRLPNLASPSAEGPPRPCPGAAPRRKTQEKDDDVLFAL hide sequence

RefSeq Acc Id:	XP_017456799 ⟸ XM_017601310
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ACG3 (UniProtKB/TrEMBL), F7EYC4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEICDIINETEEGPKDAFRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVEN VLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVAVYEDLRRKGLEFPMTDLDMLSP IHTPQRTVFNSETPSRQNPVVSNSSHRGDLSQHATPLPTPAVLPGDSPITPTPEQIGKLRSELE MVNGNVRVMSEMLTELVPTQVEPADLELLQELNRTCRAMQQRILELIPRISNEQLTEELLMIND NLNNVFLRHERFERFRTGQTAKASGEAELAADLIDMGPDPAATSNLSSQLAGVDLGSSRVRAGL QSLEASGHLEDDFDMFALTRGSSLADQRKGVKYEAPQTTDGLAGALDARQQSTGAIPATQARIM EDIEQWLSTDVGSSAEEPSGVTSEEFDKFLEERAKAADRLPNLASPSAEGPPRPCPGAAPRRKT QEKDDDVLFAL hide sequence

RefSeq Acc Id:

ENSRNOP00000018880 ⟸ ENSRNOT00000018880

RefSeq Acc Id:	XP_038953739 ⟸ XM_039097811
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSRNOP00000089787 ⟸ ENSRNOT00000108363

Protein Domains

GAT VHS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XI21-F1-model_v2	AlphaFold	Q5XI21	1-492	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700959

Promoter ID:

EPDNEW_R11483

Type:

initiation region

Name:

Tom1_1

Description:

target of myb1 membrane trafficking protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	14,392,459 - 14,392,519	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308024	AgrOrtholog
BioCyc Gene	G2FUF-6424	BioCyc
Ensembl Genes	ENSRNOG00000014093	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018880	ENTREZGENE
	ENSRNOT00000018880.5	UniProtKB/TrEMBL
	ENSRNOT00000108363.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.160	UniProtKB/TrEMBL
	1.25.40.90	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7128979	IMAGE-MGC_LOAD
InterPro	ENTH_VHS	UniProtKB/TrEMBL
	GAT	UniProtKB/TrEMBL
	GAT_sf	UniProtKB/TrEMBL
	TOM1	UniProtKB/TrEMBL
	VHS	UniProtKB/TrEMBL
KEGG Report	rno:361370	UniProtKB/TrEMBL
MGC_CLONE	MGC:95142	IMAGE-MGC_LOAD
NCBI Gene	361370	ENTREZGENE
PANTHER	TARGET OF MYB PROTEIN 1	UniProtKB/TrEMBL
	VHS DOMAIN CONTAINING PROTEIN FAMILY	UniProtKB/TrEMBL
Pfam	GAT	UniProtKB/TrEMBL
	VHS	UniProtKB/TrEMBL
PhenoGen	Tom1	PhenoGen
PIRSF	TOM1	UniProtKB/TrEMBL
PROSITE	GAT	UniProtKB/TrEMBL
	VHS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014093	RatGTEx
SMART	VHS	UniProtKB/TrEMBL
Superfamily-SCOP	ENTH_VHS	UniProtKB/TrEMBL
	GAT-like domain	UniProtKB/TrEMBL
UniProt	A0A8I6ACG3	ENTREZGENE, UniProtKB/TrEMBL
	A6JY94_RAT	UniProtKB/TrEMBL
	A6JY95_RAT	UniProtKB/TrEMBL
	A6JY96_RAT	UniProtKB/TrEMBL
	F7EYC4	ENTREZGENE, UniProtKB/TrEMBL
	Q5XI21	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-06-26	Tom1	target of myb1 membrane trafficking protein	Tom1	target of myb1 (chicken)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-02-04	Tom1	target of myb1 (chicken)	Tom1	target of myb1 homolog (chicken)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Tom1	target of myb1 homolog (chicken)	Tom1_predicted	target of myb1 homolog (chicken) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Tom1_predicted	target of myb1 homolog (chicken) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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