Farp2 (FERM, ARH/RhoGEF and pleckstrin domain protein 2) - Rat Genome Database

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Gene: Farp2 (FERM, ARH/RhoGEF and pleckstrin domain protein 2) Rattus norvegicus
Analyze
Symbol: Farp2
Name: FERM, ARH/RhoGEF and pleckstrin domain protein 2
RGD ID: 1308003
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in several processes, including osteoclast differentiation; podosome assembly; and regulation of integrin activation. Predicted to act upstream of or within Rac protein signal transduction; hair cycle process; and neuron remodeling. Predicted to be located in cytoplasm. Orthologous to human FARP2 (FERM, ARH/RhoGEF and pleckstrin domain protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FERM, ARHGEF and pleckstrin domain-containing protein 2; FERM, RhoGEF and pleckstrin domain protein 2; FERM, RhoGEF and pleckstrin domain-containing protein 2; LOC316639
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89101,501,061 - 101,609,092 (+)NCBIGRCr8
mRatBN7.2994,053,650 - 94,161,982 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl994,053,726 - 94,162,212 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9102,489,254 - 102,597,221 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,624,909 - 107,733,050 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,981,055 - 106,089,151 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,660,366 - 100,767,940 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,660,394 - 100,767,940 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09100,313,398 - 100,421,287 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4992,792,360 - 92,908,126 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1993,012,698 - 93,111,871 (+)NCBI
Celera991,588,307 - 91,696,198 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytoskeleton  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12351724   PMID:20702777   PMID:23375260   PMID:25340873  


Genomics

Comparative Map Data
Farp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89101,501,061 - 101,609,092 (+)NCBIGRCr8
mRatBN7.2994,053,650 - 94,161,982 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl994,053,726 - 94,162,212 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9102,489,254 - 102,597,221 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,624,909 - 107,733,050 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,981,055 - 106,089,151 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,660,366 - 100,767,940 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,660,394 - 100,767,940 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09100,313,398 - 100,421,287 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4992,792,360 - 92,908,126 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1993,012,698 - 93,111,871 (+)NCBI
Celera991,588,307 - 91,696,198 (+)NCBICelera
Cytogenetic Map9q36NCBI
FARP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,356,285 - 241,494,841 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,356,285 - 241,494,841 (+)EnsemblGRCh38hg38GRCh38
GRCh372242,295,700 - 242,434,256 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,944,384 - 242,082,928 (+)NCBINCBI36Build 36hg18NCBI36
Build 342242,015,700 - 242,154,245NCBI
Celera2235,964,969 - 236,103,837 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2234,051,393 - 234,189,761 (+)NCBIHuRef
CHM1_12242,301,434 - 242,440,227 (+)NCBICHM1_1
T2T-CHM13v2.02241,855,439 - 241,994,178 (+)NCBIT2T-CHM13v2.0
Farp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,439,826 - 93,549,698 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,439,801 - 93,549,698 (+)EnsemblGRCm39 Ensembl
GRCm38193,512,104 - 93,621,976 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,512,079 - 93,621,976 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,408,681 - 95,518,553 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,342,531 - 95,452,188 (+)NCBIMGSCv36mm8
Celera196,457,728 - 96,567,688 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.24NCBI
Farp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955542280,008 - 379,166 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955542279,489 - 395,524 (-)NCBIChiLan1.0ChiLan1.0
FARP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213144,058,699 - 144,197,939 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B144,073,596 - 144,212,836 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B128,627,208 - 128,766,233 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B247,421,405 - 247,560,451 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B247,438,265 - 247,559,735 (+)Ensemblpanpan1.1panPan2
FARP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12551,331,876 - 51,425,754 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2551,332,409 - 51,425,449 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2551,544,508 - 51,638,156 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02551,526,301 - 51,617,768 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2551,526,288 - 51,617,727 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12551,373,991 - 51,469,131 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02551,113,778 - 51,207,589 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02551,389,978 - 51,485,309 (+)NCBIUU_Cfam_GSD_1.0
Farp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303192,714,789 - 192,792,329 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936745426,846 - 504,672 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936745427,093 - 504,653 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FARP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15140,060,372 - 140,144,037 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115140,060,304 - 140,144,059 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215154,672,220 - 154,682,744 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FARP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110127,422,843 - 127,570,848 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10127,422,870 - 127,573,801 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604071,772,807 - 71,957,765 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Farp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248475,385,764 - 5,511,227 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248475,385,718 - 5,511,408 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Farp2
404 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:80
Interacting mature miRNAs:97
Transcripts:ENSRNOT00000024440
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)992491589100929786Rat

Markers in Region
D9Got121  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2994,136,595 - 94,136,891 (+)MAPPERmRatBN7.2
Rnor_6.09100,742,327 - 100,742,622NCBIRnor6.0
Rnor_5.09100,395,673 - 100,395,968UniSTSRnor5.0
RGSC_v3.4992,882,510 - 92,882,808RGDRGSC3.4
RGSC_v3.4992,882,511 - 92,882,808UniSTSRGSC3.4
RGSC_v3.1993,087,280 - 93,087,577RGD
Celera991,670,584 - 91,670,879UniSTS
RH 3.4 Map9804.7UniSTS
RH 3.4 Map9804.7RGD
RH 2.0 Map9967.8RGD
Cytogenetic Map9q36UniSTS
RH128624  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2994,162,008 - 94,162,217 (+)MAPPERmRatBN7.2
Rnor_6.09100,767,737 - 100,767,945NCBIRnor6.0
Rnor_5.09100,421,084 - 100,421,292UniSTSRnor5.0
RGSC_v3.4992,907,923 - 92,908,131UniSTSRGSC3.4
Celera991,695,995 - 91,696,203UniSTS
RH 3.4 Map9809.5UniSTS
Cytogenetic Map9q36UniSTS
RH142641  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2994,127,335 - 94,127,446 (+)MAPPERmRatBN7.2
Rnor_6.09100,733,067 - 100,733,177NCBIRnor6.0
Rnor_5.09100,386,413 - 100,386,523UniSTSRnor5.0
RGSC_v3.4992,873,251 - 92,873,361UniSTSRGSC3.4
Celera991,661,324 - 91,661,434UniSTS
RH 3.4 Map9807.8UniSTS
Cytogenetic Map9q36UniSTS
BF386912  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2994,160,499 - 94,160,697 (+)MAPPERmRatBN7.2
Rnor_6.09100,766,228 - 100,766,425NCBIRnor6.0
Rnor_5.09100,419,575 - 100,419,772UniSTSRnor5.0
RGSC_v3.4992,906,414 - 92,906,611UniSTSRGSC3.4
Celera991,694,486 - 91,694,683UniSTS
RH 3.4 Map9810.1UniSTS
Cytogenetic Map9q36UniSTS
BE112873  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2994,162,094 - 94,162,271 (+)MAPPERmRatBN7.2
Rnor_6.09100,767,823 - 100,767,999NCBIRnor6.0
Rnor_5.09100,421,170 - 100,421,346UniSTSRnor5.0
RGSC_v3.4992,908,009 - 92,908,185UniSTSRGSC3.4
Celera991,696,081 - 91,696,257UniSTS
RH 3.4 Map9813.5UniSTS
Cytogenetic Map9q36UniSTS
BF390490  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2994,156,623 - 94,156,779 (+)MAPPERmRatBN7.2
Rnor_6.09100,762,353 - 100,762,508NCBIRnor6.0
Rnor_5.09100,415,700 - 100,415,855UniSTSRnor5.0
RGSC_v3.4992,902,539 - 92,902,694UniSTSRGSC3.4
Celera991,690,611 - 91,690,766UniSTS
RH 3.4 Map9814.1UniSTS
Cytogenetic Map9q36UniSTS
AI176707  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2994,161,344 - 94,161,538 (+)MAPPERmRatBN7.2
Rnor_6.09100,767,073 - 100,767,266NCBIRnor6.0
Rnor_5.09100,420,420 - 100,420,613UniSTSRnor5.0
RGSC_v3.4992,907,259 - 92,907,452UniSTSRGSC3.4
Celera991,695,331 - 91,695,524UniSTS
RH 3.4 Map9810.1UniSTS
Cytogenetic Map9q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 31 23 23 9 23 17 8
Low 43 26 18 19 18 8 11 65 12 24 3 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000024440   ⟹   ENSRNOP00000024440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl994,053,726 - 94,162,212 (+)Ensembl
Rnor_6.0 Ensembl9100,660,394 - 100,767,940 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110498   ⟹   ENSRNOP00000092508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl994,053,726 - 94,126,875 (+)Ensembl
RefSeq Acc Id: NM_001108233   ⟹   NP_001101703
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,501,127 - 101,609,092 (+)NCBI
mRatBN7.2994,053,747 - 94,161,720 (+)NCBI
Rnor_6.09100,660,394 - 100,767,940 (+)NCBI
Rnor_5.09100,313,398 - 100,421,287 (+)NCBI
RGSC_v3.4992,792,360 - 92,908,126 (+)RGD
Celera991,588,307 - 91,696,198 (+)RGD
Sequence:
RefSeq Acc Id: XM_039083770   ⟹   XP_038939698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,501,061 - 101,609,088 (+)NCBI
mRatBN7.2994,053,681 - 94,161,982 (+)NCBI
RefSeq Acc Id: XM_039083771   ⟹   XP_038939699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,501,061 - 101,609,088 (+)NCBI
mRatBN7.2994,053,681 - 94,161,982 (+)NCBI
RefSeq Acc Id: XM_063267327   ⟹   XP_063123397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89101,501,249 - 101,609,088 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101703 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939698 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939699 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123397 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL91918 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024440
  ENSRNOP00000024440.5
  ENSRNOP00000092508.1
Reference Protein Sequences
RefSeq Acc Id: NP_001101703   ⟸   NM_001108233
- UniProtKB: D3ZFK8 (UniProtKB/TrEMBL),   A6JR19 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000024440   ⟸   ENSRNOT00000024440
RefSeq Acc Id: XP_038939699   ⟸   XM_039083771
- Peptide Label: isoform X1
- UniProtKB: D3ZFK8 (UniProtKB/TrEMBL),   A6JR19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939698   ⟸   XM_039083770
- Peptide Label: isoform X1
- UniProtKB: D3ZFK8 (UniProtKB/TrEMBL),   A6JR19 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000092508   ⟸   ENSRNOT00000110498
RefSeq Acc Id: XP_063123397   ⟸   XM_063267327
- Peptide Label: isoform X1
- UniProtKB: A6JR19 (UniProtKB/TrEMBL),   D3ZFK8 (UniProtKB/TrEMBL)
Protein Domains
DH   FERM   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFK8-F1-model_v2 AlphaFold D3ZFK8 1-1060 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696877
Promoter ID:EPDNEW_R7402
Type:initiation region
Name:Farp2_1
Description:FERM, ARH/RhoGEF and pleckstrin domain protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09100,660,390 - 100,660,450EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308003 AgrOrtholog
BioCyc Gene G2FUF-26638 BioCyc
Ensembl Genes ENSRNOG00000018051 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024440.6 UniProtKB/TrEMBL
  ENSRNOT00000110498.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro Band_41_domain UniProtKB/TrEMBL
  DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  Ez/rad/moesin UniProtKB/TrEMBL
  FARP1/FARP2/FRMD7_FERM_C UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_3-hlx UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
KEGG Report rno:316639 UniProtKB/TrEMBL
NCBI Gene 316639 ENTREZGENE
PANTHER FERM DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  FERM, ARHGEF AND PLECKSTRIN DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  PF08736 UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
PhenoGen Farp2 PhenoGen
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
PROSITE DH_2 UniProtKB/TrEMBL
  FERM_1 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018051 RatGTEx
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
  SM01195 UniProtKB/TrEMBL
Superfamily-SCOP DH-domain UniProtKB/TrEMBL
  FERM_3-hlx UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A8I6GJU1_RAT UniProtKB/TrEMBL
  A6JR19 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFK8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-19 Farp2  FERM, ARH/RhoGEF and pleckstrin domain protein 2  Farp2  FERM, RhoGEF and pleckstrin domain protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Farp2  FERM, RhoGEF and pleckstrin domain protein 2   Farp2_predicted  FERM, RhoGEF and pleckstrin domain protein 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Farp2_predicted  FERM, RhoGEF and pleckstrin domain protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED