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Gene: Ube2l6 (ubiquitin-conjugating enzyme E2L 6) Rattus norvegicus

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Symbol:

Ube2l6

Name:

ubiquitin-conjugating enzyme E2L 6

RGD ID:

1307960

Description:

Predicted to enable ISG15 transferase activity; ubiquitin binding activity; and ubiquitin conjugating enzyme activity. Predicted to be involved in ISG15-protein conjugation; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within innate immune response and modification-dependent protein catabolic process. Predicted to be active in nucleus. Orthologous to human UBE2L6 (ubiquitin conjugating enzyme E2 L6); PARTICIPATES IN Parkinson's disease pathway; ubiquitin/proteasome degradation pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

E2 ubiquitin-conjugating enzyme L6; LOC295704; ubcM8; ubiquitin carrier protein L6; ubiquitin-protein ligase L6; ubiquitin/ISG15-conjugating enzyme E2 L6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UBE2L6 (ubiquitin conjugating enzyme E2 L6)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ube2l6 (ubiquitin-conjugating enzyme E2L 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ube2l6 (ubiquitin conjugating enzyme E2 L6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UBE2L6 (ubiquitin conjugating enzyme E2 L6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UBE2L6 (ubiquitin conjugating enzyme E2 L6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ube2l6 (ubiquitin conjugating enzyme E2 L6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UBE2L6 (ubiquitin conjugating enzyme E2 L6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UBE2L6 (ubiquitin conjugating enzyme E2 L6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ube2l6 (ubiquitin conjugating enzyme E2 L6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ube2l6 (ubiquitin conjugating enzyme E2 L6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	UBE2L6 (ubiquitin conjugating enzyme E2 L6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ube2l6 (ubiquitin-conjugating enzyme E2L 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ube2l3b (ubiquitin-conjugating enzyme E2L 3b)	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	ube2l3a (ubiquitin-conjugating enzyme E2L 3a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17030	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|PANTHER)
Drosophila melanogaster (fruit fly):	CG17030	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Ubc10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ubc10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|PANTHER)
Caenorhabditis elegans (roundworm):	ubc-18	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ubc-18	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Ubc84D	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ubc84D	Alliance	DIOPT (Ensembl Compara\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	90,279,705 - 90,294,721 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	90,279,668 - 90,294,717 (+)	Ensembl				GRCr8
mRatBN7.2	3	69,873,025 - 69,888,042 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	69,873,424 - 69,888,048 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	73,254,687 - 73,269,744 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	81,853,352 - 81,868,411 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	79,612,355 - 79,627,399 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	72,191,533 - 72,206,190 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	72,191,533 - 72,206,188 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	78,712,108 - 78,727,222 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	68,000,239 - 68,016,331 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	69,228,175 - 69,243,315 (+)	NCBI		Celera
RGSC_v3.1	3	67,896,610 - 67,912,701 (+)	NCBI
Cytogenetic Map	3	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Human Influenza (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2-butoxyethanol (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

aluminium atom (ISO)

aluminium(0) (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

bathocuproine disulfonic acid (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

CGP 52608 (ISO)

chloroprene (EXP)

chromium(6+) (ISO)

cisplatin (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

D-glucose (ISO)

deguelin (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dieldrin (EXP)

dioxygen (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

flutamide (EXP)

folic acid (ISO)

fonofos (ISO)

fructose (ISO)

genistein (ISO)

gentamycin (EXP)

glucose (ISO)

glyphosate (ISO)

hydralazine (ISO)

irinotecan (EXP)

iron dichloride (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel atom (ISO)

nickel dichloride (EXP)

ozone (ISO)

paclitaxel (ISO)

paracetamol (ISO)

parathion (ISO)

PCB138 (EXP)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

pyrrolidine dithiocarbamate (ISO)

rotenone (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

succimer (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

terbufos (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (EXP)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

innate immune response (IEA,ISO)

ISG15-protein conjugation (IBA,IEA,ISO)

modification-dependent protein catabolic process (ISO)

protein polyubiquitination (IBA)

protein ubiquitination (IEA)

proteolysis involved in protein catabolic process (IEA)

ubiquitin-dependent protein catabolic process (IBA)

Cellular Component

nucleus (IBA)

Molecular Function

ATP binding (IEA)

ISG15 transferase activity (IBA,IEA,ISO)

nucleotide binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin binding (ISO)

ubiquitin conjugating enzyme activity (IBA,IEA)

ubiquitin-like protein transferase activity (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Parkinson's disease pathway (IEA)

ubiquitin/proteasome degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15485925	PMID:16139798

Genomics

Comparative Map Data

Ube2l6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	90,279,705 - 90,294,721 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	90,279,668 - 90,294,717 (+)	Ensembl				GRCr8
mRatBN7.2	3	69,873,025 - 69,888,042 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	69,873,424 - 69,888,048 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	73,254,687 - 73,269,744 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	81,853,352 - 81,868,411 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	79,612,355 - 79,627,399 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	72,191,533 - 72,206,190 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	72,191,533 - 72,206,188 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	78,712,108 - 78,727,222 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	68,000,239 - 68,016,331 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	69,228,175 - 69,243,315 (+)	NCBI		Celera
RGSC_v3.1	3	67,896,610 - 67,912,701 (+)	NCBI
Cytogenetic Map	3	q24	NCBI

UBE2L6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	57,551,662 - 57,567,935 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	57,551,656 - 57,568,284 (-)	Ensembl			hg38	GRCh38
GRCh37	11	57,319,135 - 57,335,408 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	57,075,705 - 57,092,029 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	57,075,704 - 57,092,029	NCBI
Celera	11	54,675,648 - 54,691,971 (-)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	53,667,920 - 53,684,590 (-)	NCBI		HuRef
CHM1_1	11	57,185,369 - 57,202,044 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	57,501,830 - 57,518,098 (-)	NCBI		T2T-CHM13v2.0

Ube2l6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	84,629,172 - 84,640,347 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	84,629,172 - 84,640,679 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	84,798,828 - 84,810,003 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	84,798,828 - 84,810,335 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	84,638,985 - 84,650,160 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	84,599,691 - 84,610,552 (+)	NCBI		MGSCv36	mm8
Celera	2	86,394,014 - 86,405,538 (+)	NCBI		Celera
Cytogenetic Map	2	D	NCBI
cM Map	2	49.45	NCBI

Ube2l6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955511	2,522,850 - 2,528,926 (-)	Ensembl
ChiLan1.0	NW_004955511	2,522,850 - 2,528,926 (-)	NCBI	ChiLan1.0	ChiLan1.0

UBE2L6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	58,708,117 - 58,724,748 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	59,725,156 - 59,741,769 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	52,792,573 - 52,809,253 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	56,264,204 - 56,281,045 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	56,264,907 - 56,274,733 (-)	Ensembl			panPan2	panpan1.1

UBE2L6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	38,604,172 - 38,619,118 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	38,604,198 - 38,618,993 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	38,150,298 - 38,165,273 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	39,286,145 - 39,301,125 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	39,286,176 - 39,301,116 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	38,868,994 - 38,883,721 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	38,442,340 - 38,457,314 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	39,072,768 - 39,087,759 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ube2l6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	14,829,526 - 14,840,583 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	4,943,887 - 4,954,241 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	4,943,742 - 4,954,281 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBE2L6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	13,354,014 - 13,370,792 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	13,354,088 - 13,368,446 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	12,987,538 - 13,002,246 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBE2L6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	15,667,026 - 15,680,603 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	15,667,009 - 15,681,602 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	113,018,018 - 113,034,896 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ube2l6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624864	3,108,380 - 3,113,349 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624864	3,103,656 - 3,113,349 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ube2l6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	62,179,721 - 62,190,757 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ube2l6
137 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	267
Count of miRNA genes:	176
Interacting mature miRNAs:	203
Transcripts:	ENSRNOT00000044319
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	73592611	110333156	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	53651826	98651826	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	48876619	93876619	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	48876619	93876619	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	47904172	92904172	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	48657744	93657744	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	48657744	93657744	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	50766145	95766145	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	50766145	95766145	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	48657744	93657744	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	48657744	93657744	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	48657744	93657744	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

RH128378

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	69,887,732 - 69,887,918 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	72,205,881 - 72,206,066	NCBI	Rnor6.0
Rnor_5.0	3	78,726,913 - 78,727,098	UniSTS	Rnor5.0
RGSC_v3.4	3	68,016,022 - 68,016,207	UniSTS	RGSC3.4
Celera	3	69,243,006 - 69,243,191	UniSTS
Cytogenetic Map	3	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000044319 ⟹ ENSRNOP00000039001

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	90,283,310 - 90,294,717 (+)	Ensembl
mRatBN7.2 Ensembl	3	69,873,424 - 69,887,990 (+)	Ensembl
Rnor_6.0 Ensembl	3	72,191,533 - 72,206,188 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106051 ⟹ ENSRNOP00000095336

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	90,279,668 - 90,294,717 (+)	Ensembl
mRatBN7.2 Ensembl	3	69,876,630 - 69,888,048 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109055 ⟹ ENSRNOP00000084777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	69,873,468 - 69,888,048 (+)	Ensembl

RefSeq Acc Id:

NM_001024755 ⟹ NP_001019926

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	90,279,705 - 90,294,721 (+)	NCBI
mRatBN7.2	3	69,873,025 - 69,888,042 (+)	NCBI
Rnor_6.0	3	72,191,533 - 72,206,190 (+)	NCBI
Rnor_5.0	3	78,712,108 - 78,727,222 (+)	NCBI
RGSC_v3.4	3	68,000,239 - 68,016,331 (+)	RGD
Celera	3	69,228,175 - 69,243,315 (+)	RGD

Sequence:

show sequence

CACAGTTAAGGGAGCGGTCCTTGGAGGGCATAAAGTCTACACTGATCCCCAATCTCTTTTAGGA
TGGGGTACTAGACCCACAAAGGCAAAGTGATTTGGCCCAGGACTCTGAGAATTTCTCTAGAGGT
GGGGGTTAGGTCCACAATCTCACTGAGAGAGCCTGCAGCAGAGTTACTTTGCAGCGGCGTCGGG
GGAGCTGACAGAGGCTAGGGATGAACCCCATCCCAGCTCCTGCCTGATGTACTCTACGAGATGC
AGGAACCACAGACGTAGTCTCTGATCTGCAAAGAGCTTGAGTTTCTTGGATTTAAGACCGCCAA
GCTGGGCACTCCGCAGCCTCCACGTATCCCTCGAAGAAGTGGGAAGCAGGTCTTTACAGCTGGA
GCCCGTGTAGGTGGAGCAGAGCGTGGGCGGGGCTCAGGATCGTCCGGCAAGAATCTGCTGCTGC
CCCACGCTCCAACCTGAGATGACGGCCAGCAAGCGAGTGGCTAAAGAGCTGGACGATCTTTCGA
AGGAGCTTCCGCCATACCTGCGCCACCTGTCTAGCGATGATGCCAATGTGCTGGTGTGGCACAT
GCTCCTGCTGCCAGACCAACTTCCCTATCGCCTCAAGGCCTTCGGTCTGCGGATTGATTTCCCC
AGGGAGTATCCACTTAAGCCTCCCACTTTGAGATTCACCACCAAGATCTACCACCCCAACATCA
GTGAGGATGGACTGGTGTGCCTTCCCCTCATCAGCACTGAGAACTGGAAACCTTACACCAAGGC
CTATCAAGTCTTGGAGGCCCTCAACATACTGGTGAGTAGACCGAATCTGGAAGAACCTGTGCGT
TTGGAACTAGCTGACCTCCTGACTCAGGACCCGGAGATGTTCAGGAAGAAGGCAGAAGAGTTCA
CCCTTCAATATGGAGTGGACCGACCCTCTTAATTCTGGTTCTGAAGCCTCTCTCCCTGGATCTT
CTGTGGATGGATATCACAGGAAGGCCATCCTGTGCCGAAGGTTTCCTTTGTATTGCTAATTATG
AATATTGTGCCCAGTGTGTATGTATGTGTTGGGGGGAACTGTGTGGTGGGTACTCCTTCCTGGA
GTCATCTGGCTGTAGATGTACCATTCCCACGTCCTCGGTGGCTCCAAAGCCAGTGGACGGACGT
TAGGTATGCACAGTTTCAGGCCTGCTTTCTAGATAATCCATCTTAGGTCACCTTCAGGTCAATT
GGCAGAAAATTGAATGCCCCAGGGCCTGGGCACCAAGGGGTGAGAAGGCAGGACTCTGCTTGGA
AGACAGGGCCTCCAGAAGGTGCCGGATTTACTGCTGAGTGATTGAAATCAACCCCATTGTAATT
GAAAACGTTAAACATTTTATTTTCTGTTGATGACTCACAAAATAAAGTAACTAACCTCCACCCA
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017591548 ⟹ XP_017447037

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	90,281,456 - 90,294,721 (+)	NCBI
mRatBN7.2	3	69,874,784 - 69,888,042 (+)	NCBI
Rnor_6.0	3	72,193,257 - 72,206,190 (+)	NCBI

Sequence:

show sequence

CTAACAGGCTTTGGGAGGAGCTGTGTGTCCTAGCTTGGGTTTCAGCAGTCATAGGAAATTCAGC
CAGAAGTCATCAAAACGCATTAAAAATCTAAGTACTCCCAGTGGAGCTGGACGATCTTTCGAAG
GAGCTTCCGCCATACCTGCGCCACCTGTCTAGCGATGATGCCAATGTGCTGGTGTGGCACATGC
TCCTGCTGCCAGACCAACTTCCCTATCGCCTCAAGGCCTTCGGTCTGCGGATTGATTTCCCCAG
GGAGTATCCACTTAAGCCTCCCACTTTGAGATTCACCACCAAGATCTACCACCCCAACATCAGT
GAGGATGGACTGGTGTGCCTTCCCCTCATCAGCACTGAGAACTGGAAACCTTACACCAAGGCCT
ATCAAGTCTTGGAGGCCCTCAACATACTGGTGAGTAGACCGAATCTGGAAGAACCTGTGCGTTT
GGAACTAGCTGACCTCCTGACTCAGGACCCGGAGATGTTCAGGAAGAAGGCAGAAGAGTTCACC
CTTCAATATGGAGTGGACCGACCCTCTTAATTCTGGTTCTGAAGCCTCTCTCCCTGGATCTTCT
GTGGATGGATATCACAGGAAGGCCATCCTGTGCCGAAGGTTTCCTTTGTATTGCTAATTATGAA
TATTGTGCCCAGTGTGTATGTATGTGTTGGGGGGAACTGTGTGGTGGGTACTCCTTCCTGGAGT
CATCTGGCTGTAGATGTACCATTCCCACGTCCTCGGTGGCTCCAAAGCCAGTGGACGGACGTTA
GGTATGCACAGTTTCAGGCCTGCTTTCTAGATAATCCATCTTAGGTCACCTTCAGGTCAATTGG
CAGAAAATTGAATGCCCCAGGGCCTGGGCACCAAGGGGTGAGAAGGCAGGACTCTGCTTGGAAG
ACAGGGCCTCCAGAAGGTGCCGGATTTACTGCTGAGTGATTGAAATCAACCCCATTGTAATTGA
AAACGTTAAACATTTTATTTTCTGTTGATGACTCACAAAATAAAGTAACTAACCTCCACCCAGA
A

hide sequence

Protein Sequences


Protein RefSeqs	NP_001019926	(Get FASTA)	NCBI Sequence Viewer
	XP_017447037	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97364	(Get FASTA)	NCBI Sequence Viewer
	EDL79316	(Get FASTA)	NCBI Sequence Viewer
	EDL79317	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000084777.1
	ENSRNOP00000095336
GenBank Protein	Q4V8J2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001019926 ⟸ NM_001024755
- UniProtKB:	Q4V8J2 (UniProtKB/Swiss-Prot), A6HMR6 (UniProtKB/TrEMBL), A0A8L2QJE0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTASKRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLLPDQLPYRLKAFGLRIDFPREYPLK PPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADL LTQDPEMFRKKAEEFTLQYGVDRPS hide sequence

RefSeq Acc Id:	XP_017447037 ⟸ XM_017591548
- Peptide Label:	isoform X1
- Sequence:	show sequence MLLLPDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTK AYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQYGVDRPS hide sequence

Ensembl Acc Id:

ENSRNOP00000039001 ⟸ ENSRNOT00000044319

Ensembl Acc Id:

ENSRNOP00000095336 ⟸ ENSRNOT00000106051

Ensembl Acc Id:

ENSRNOP00000084777 ⟸ ENSRNOT00000109055

Protein Domains

UBC core

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V8J2-F1-model_v2	AlphaFold	Q4V8J2	1-153	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692183

Promoter ID:

EPDNEW_R2708

Type:

initiation region

Name:

Ube2l6_2

Description:

ubiquitin-conjugating enzyme E2L 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2709

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	72,191,499 - 72,191,559	EPDNEW

RGD ID:

13692184

Promoter ID:

EPDNEW_R2709

Type:

initiation region

Name:

Ube2l6_1

Description:

ubiquitin-conjugating enzyme E2L 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2708

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	72,191,991 - 72,192,051	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307960	AgrOrtholog
BioCyc Gene	G2FUF-49155	BioCyc
Ensembl Genes	ENSRNOG00000030467	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000106051	ENTREZGENE
	ENSRNOT00000109055.1	UniProtKB/Swiss-Prot
Gene3D-CATH	3.10.110.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7443068	IMAGE-MGC_LOAD
InterPro	Ub_conjugating_enzyme	UniProtKB/Swiss-Prot
	UBQ-conjugat_E2	UniProtKB/Swiss-Prot
	UBQ-conjugating_AS	UniProtKB/Swiss-Prot
	UBQ-conjugating_enzyme/RWD	UniProtKB/Swiss-Prot
KEGG Report	rno:295704	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:114397	IMAGE-MGC_LOAD
NCBI Gene	295704	ENTREZGENE
PANTHER	UBIQUITIN-CONJUGATING ENZYME E2	UniProtKB/Swiss-Prot
Pfam	UQ_con	UniProtKB/Swiss-Prot
PhenoGen	Ube2l6	PhenoGen
PROSITE	UBIQUITIN_CONJUGAT_1	UniProtKB/Swiss-Prot
	UBIQUITIN_CONJUGAT_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000030467	RatGTEx
SMART	UBCc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54495	UniProtKB/Swiss-Prot
UniProt	A0A8I6AN79_RAT	UniProtKB/TrEMBL
	A0A8L2QJE0	ENTREZGENE
	A6HMR5_RAT	UniProtKB/TrEMBL
	A6HMR6	ENTREZGENE, UniProtKB/TrEMBL
	Q4V8J2	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Ube2l6	ubiquitin-conjugating enzyme E2L 6	Ube2l6_predicted	ubiquitin-conjugating enzyme E2L 6 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Ube2l6_predicted	ubiquitin-conjugating enzyme E2L 6 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)