Cpne8 (copine 8) - Rat Genome Database

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Pathways
Gene: Cpne8 (copine 8) Rattus norvegicus
Analyze
Symbol: Cpne8
Name: copine 8
RGD ID: 1307939
Description: Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE8 (copine 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: copine 8 protein; copine VIII; copine-8; LOC362988
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87123,494,864 - 123,669,060 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7123,494,865 - 123,669,060 (-)EnsemblGRCr8
mRatBN7.27121,615,293 - 121,789,507 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7121,615,294 - 121,790,377 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7123,401,217 - 123,575,243 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07125,627,291 - 125,801,316 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07125,564,471 - 125,738,790 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07131,623,180 - 131,798,236 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7131,623,181 - 131,798,236 (-)Ensemblrn6Rnor6.0
Rnor_5.07131,298,537 - 131,472,968 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47128,884,441 - 129,062,272 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7118,069,182 - 118,243,309 (-)NCBICelera
RGSC_v3.17128,920,187 - 129,096,419 (-)NCBI
Cytogenetic Map7q35NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chloroprene  (EXP)
choline  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dorsomorphin  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
glafenine  (EXP)
isoprenaline  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
melphalan  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (EXP)
naphthalene  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenformin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (EXP)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:20458337   PMID:23533145  


Genomics

Comparative Map Data
Cpne8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87123,494,864 - 123,669,060 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7123,494,865 - 123,669,060 (-)EnsemblGRCr8
mRatBN7.27121,615,293 - 121,789,507 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7121,615,294 - 121,790,377 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7123,401,217 - 123,575,243 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07125,627,291 - 125,801,316 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07125,564,471 - 125,738,790 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07131,623,180 - 131,798,236 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7131,623,181 - 131,798,236 (-)Ensemblrn6Rnor6.0
Rnor_5.07131,298,537 - 131,472,968 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47128,884,441 - 129,062,272 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7118,069,182 - 118,243,309 (-)NCBICelera
RGSC_v3.17128,920,187 - 129,096,419 (-)NCBI
Cytogenetic Map7q35NCBI
CPNE8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381238,652,203 - 38,906,835 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1238,646,822 - 38,907,430 (-)Ensemblhg38GRCh38
GRCh371239,046,005 - 39,299,393 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361237,332,269 - 37,585,687 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341237,332,268 - 37,585,687NCBI
Celera1237,850,417 - 38,103,873 (-)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1236,072,413 - 36,325,024 (-)NCBIHuRef
CHM1_11239,011,641 - 39,265,433 (-)NCBICHM1_1
T2T-CHM13v2.01238,601,932 - 38,855,989 (-)NCBIT2T-CHM13v2.0
Cpne8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391590,371,684 - 90,563,591 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1590,371,685 - 90,563,635 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381590,487,481 - 90,679,388 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1590,487,482 - 90,679,432 (-)Ensemblmm10GRCm38
MGSCv371590,317,912 - 90,509,819 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361590,315,248 - 90,507,155 (-)NCBIMGSCv36mm8
Celera1592,614,356 - 92,803,418 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1545.21NCBI
Cpne8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555051,360,091 - 1,551,093 (+)Ensembl
ChiLan1.0NW_0049555051,360,091 - 1,551,093 (+)NCBIChiLan1.0ChiLan1.0
CPNE8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21055,237,459 - 55,517,822 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11255,233,988 - 55,487,224 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01249,794,190 - 50,047,370 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11250,649,907 - 50,903,150 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1250,648,797 - 50,903,150 (+)EnsemblpanPan2panpan1.1
CPNE8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12714,620,300 - 14,938,470 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2714,618,698 - 14,938,046 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2731,490,067 - 31,814,398 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02714,788,920 - 15,110,527 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2714,788,353 - 15,148,410 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12714,597,658 - 14,918,222 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02714,635,863 - 14,954,364 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02731,641,144 - 31,962,204 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cpne8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494575,078,583 - 75,273,677 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366071,912,205 - 2,105,532 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366071,912,138 - 2,107,040 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPNE8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl570,394,578 - 70,660,195 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1570,391,854 - 70,660,213 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2572,799,316 - 73,100,997 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPNE8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11133,774,408 - 34,000,446 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1133,773,493 - 34,000,362 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666069765,971 - 998,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpne8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247781,550,758 - 1,787,521 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247781,550,849 - 1,787,441 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cpne8
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11263,486,143 - 263,662,538 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cpne8
2007 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:538
Count of miRNA genes:241
Interacting mature miRNAs:294
Transcripts:ENSRNOT00000039857
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7116269196132020414Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7118556868125929417Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat

Markers in Region
D7Mit24  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr87123,548,057 - 123,548,310 (+)Marker Load Pipeline
mRatBN7.27121,668,493 - 121,668,746 (+)MAPPERmRatBN7.2
Rnor_6.07131,677,241 - 131,677,493NCBIRnor6.0
Rnor_5.07131,351,823 - 131,352,075UniSTSRnor5.0
RGSC_v3.47128,939,626 - 128,939,879RGDRGSC3.4
RGSC_v3.47128,939,627 - 128,939,879UniSTSRGSC3.4
Celera7118,122,623 - 118,122,875UniSTS
RGSC_v3.17128,973,711 - 128,974,127RGD
RH 3.4 Map7964.9UniSTS
RH 3.4 Map7964.9RGD
RH 2.0 Map7712.4RGD
Cytogenetic Map7q35UniSTS
D7Got130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27121,665,245 - 121,665,459 (+)MAPPERmRatBN7.2
Rnor_6.07131,673,326 - 131,673,638NCBIRnor6.0
Rnor_5.07131,348,682 - 131,348,994UniSTSRnor5.0
RGSC_v3.47128,935,281 - 128,935,494RGDRGSC3.4
RGSC_v3.47128,935,281 - 128,935,494UniSTSRGSC3.4
Celera7118,119,238 - 118,119,442UniSTS
RGSC_v3.17128,969,511 - 128,969,724RGD
RH 3.4 Map7963.7RGD
RH 3.4 Map7963.7UniSTS
RH 2.0 Map7714.9RGD
Cytogenetic Map7q35UniSTS
BF413659  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27121,790,292 - 121,790,498 (+)MAPPERmRatBN7.2
Rnor_6.07131,799,022 - 131,799,227NCBIRnor6.0
Rnor_5.07131,473,754 - 131,473,959UniSTSRnor5.0
RGSC_v3.47129,063,058 - 129,063,263UniSTSRGSC3.4
Celera7118,244,095 - 118,244,300UniSTS
Cytogenetic Map7q35UniSTS
RH129441  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2375,126,099 - 75,126,303 (+)MAPPERmRatBN7.2
mRatBN7.27121,615,345 - 121,615,548 (+)MAPPERmRatBN7.2
Rnor_6.07131,623,233 - 131,623,435NCBIRnor6.0
Rnor_6.0377,959,043 - 77,959,246NCBIRnor6.0
Rnor_5.07131,298,589 - 131,298,791UniSTSRnor5.0
Rnor_5.0384,691,609 - 84,691,812UniSTSRnor5.0
RGSC_v3.47128,884,493 - 128,884,695UniSTSRGSC3.4
RGSC_v3.4373,483,365 - 73,483,568UniSTSRGSC3.4
Celera374,383,715 - 74,383,918UniSTS
Celera7118,069,234 - 118,069,436UniSTS
Cytogenetic Map7q35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000039857   ⟹   ENSRNOP00000037093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7123,494,865 - 123,669,060 (-)Ensembl
mRatBN7.2 Ensembl7121,615,294 - 121,789,507 (-)Ensembl
Rnor_6.0 Ensembl7131,623,181 - 131,798,236 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103353   ⟹   ENSRNOP00000092037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7123,494,865 - 123,669,060 (-)Ensembl
mRatBN7.2 Ensembl7121,615,294 - 121,789,507 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112767   ⟹   ENSRNOP00000086735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7123,632,977 - 123,669,060 (-)Ensembl
mRatBN7.2 Ensembl7121,753,416 - 121,789,507 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117514   ⟹   ENSRNOP00000078470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7123,500,641 - 123,669,060 (-)Ensembl
mRatBN7.2 Ensembl7121,615,294 - 121,790,377 (-)Ensembl
RefSeq Acc Id: NM_001108750   ⟹   NP_001102220
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87123,494,865 - 123,669,060 (-)NCBI
mRatBN7.27121,615,294 - 121,789,507 (-)NCBI
Rnor_6.07131,623,181 - 131,798,236 (-)NCBI
Rnor_5.07131,298,537 - 131,472,968 (-)NCBI
RGSC_v3.47128,884,441 - 129,062,272 (-)RGD
Celera7118,069,182 - 118,243,309 (-)RGD
Sequence:
RefSeq Acc Id: XM_039079639   ⟹   XP_038935567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87123,497,435 - 123,668,931 (-)NCBI
mRatBN7.27121,617,981 - 121,789,498 (-)NCBI
RefSeq Acc Id: XM_063263950   ⟹   XP_063120020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87123,499,186 - 123,668,931 (-)NCBI
RefSeq Acc Id: XM_063263951   ⟹   XP_063120021
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87123,494,864 - 123,637,899 (-)NCBI
RefSeq Acc Id: NP_001102220   ⟸   NM_001108750
- UniProtKB: B5DEX3 (UniProtKB/TrEMBL),   F7EN58 (UniProtKB/TrEMBL),   A0A8I6GJF1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000037093   ⟸   ENSRNOT00000039857
RefSeq Acc Id: XP_038935567   ⟸   XM_039079639
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GJF1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092037   ⟸   ENSRNOT00000103353
Ensembl Acc Id: ENSRNOP00000086735   ⟸   ENSRNOT00000112767
Ensembl Acc Id: ENSRNOP00000078470   ⟸   ENSRNOT00000117514
RefSeq Acc Id: XP_063120021   ⟸   XM_063263951
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZKW9 (UniProtKB/TrEMBL),   A6K7P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120020   ⟸   XM_063263950
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GJF1 (UniProtKB/TrEMBL)
Protein Domains
C2   VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DEX3-F1-model_v2 AlphaFold B5DEX3 1-577 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695596
Promoter ID:EPDNEW_R6120
Type:initiation region
Name:Cpne8_1
Description:copine 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07131,798,178 - 131,798,238EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307939 AgrOrtholog
BioCyc Gene G2FUF-32413 BioCyc
Ensembl Genes ENSRNOG00000026128 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039857 ENTREZGENE
  ENSRNOT00000039857.6 UniProtKB/TrEMBL
  ENSRNOT00000103353.2 UniProtKB/TrEMBL
  ENSRNOT00000112767.2 UniProtKB/TrEMBL
  ENSRNOT00000117514 ENTREZGENE
  ENSRNOT00000117514.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_Ca-dep UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2B_Copine UniProtKB/TrEMBL
  Copine UniProtKB/TrEMBL
  Copine UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
KEGG Report rno:362988 UniProtKB/TrEMBL
NCBI Gene 362988 ENTREZGENE
PANTHER COPINE-8 UniProtKB/TrEMBL
  PTHR10857 UniProtKB/TrEMBL
Pfam Copine UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PhenoGen Cpne8 PhenoGen
PROSITE PS50004 UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026128 RatGTEx
SMART SM00239 UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
UniProt A0A8I5ZKW9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5W0_RAT UniProtKB/TrEMBL
  A0A8I6GJF1 ENTREZGENE, UniProtKB/TrEMBL
  A6K7P9 ENTREZGENE, UniProtKB/TrEMBL
  B5DEX3 ENTREZGENE, UniProtKB/TrEMBL
  F7EN58 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-03 Cpne8  copine 8  Cpne8  copine VIII  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cpne8  copine VIII   Cpne8_predicted  copine VIII (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cpne8_predicted  copine VIII (predicted)      Symbol and Name status set to approved 70820 APPROVED