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Gene: Clhc1 (clathrin heavy chain linker domain containing 1) Rattus norvegicus

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Symbol:

Clhc1

Name:

clathrin heavy chain linker domain containing 1

RGD ID:

1307937

Description:

Orthologous to human CLHC1 (clathrin heavy chain linker domain containing 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

clathrin heavy chain linker domain-containing protein 1; hypothetical protein LOC289865; LOC289865; RGD1307937; similar to hypothetical protein FLJ31438; uncharacterized protein C2orf63 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	107,488,983 - 107,529,667 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	107,488,643 - 107,529,669 (+)	Ensembl				GRCr8
mRatBN7.2	14	103,288,116 - 103,328,725 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	103,288,134 - 103,328,715 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	107,627,645 - 107,668,648 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	108,861,138 - 108,901,939 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	105,333,567 - 105,374,368 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	113,968,563 - 114,008,015 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	113,968,563 - 114,008,000 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	113,634,925 - 113,673,634 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	110,561,609 - 110,602,190 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	102,164,678 - 102,205,291 (+)	NCBI		Celera
RGSC_v3.1	14	110,587,955 - 110,628,536 (+)	NCBI
Cytogenetic Map	14	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

atrazine (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

D-glucose (ISO)

endosulfan (EXP)

fructose (ISO)

furan (EXP)

glucose (ISO)

methyl methanesulfonate (ISO)

paracetamol (EXP)

PCB138 (ISO)

quinolin-8-ol (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

trichloroethene (EXP,ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:21873635

Genomics

Comparative Map Data

Clhc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	107,488,983 - 107,529,667 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	107,488,643 - 107,529,669 (+)	Ensembl				GRCr8
mRatBN7.2	14	103,288,116 - 103,328,725 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	103,288,134 - 103,328,715 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	107,627,645 - 107,668,648 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	108,861,138 - 108,901,939 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	105,333,567 - 105,374,368 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	113,968,563 - 114,008,015 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	113,968,563 - 114,008,000 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	113,634,925 - 113,673,634 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	110,561,609 - 110,602,190 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	102,164,678 - 102,205,291 (+)	NCBI		Celera
RGSC_v3.1	14	110,587,955 - 110,628,536 (+)	NCBI
Cytogenetic Map	14	q22	NCBI

CLHC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	55,172,547 - 55,232,563 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	55,172,547 - 55,232,563 (-)	Ensembl			hg38	GRCh38
GRCh37	2	55,399,683 - 55,459,699 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	55,256,289 - 55,312,953 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	55,240,204 - 55,300,225 (-)	NCBI		Celera
Cytogenetic Map	2	p16.1	NCBI
HuRef	2	55,134,728 - 55,194,454 (-)	NCBI		HuRef
CHM1_1	2	55,329,751 - 55,389,756 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	55,169,784 - 55,229,793 (-)	NCBI		T2T-CHM13v2.0

Clhc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	29,497,950 - 29,528,360 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	29,497,950 - 29,528,367 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	29,547,950 - 29,578,360 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	29,547,950 - 29,578,367 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	29,447,950 - 29,478,352 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	29,447,950 - 29,478,350 (+)	NCBI		MGSCv36	mm8
Celera	11	31,909,229 - 31,939,356 (+)	NCBI		Celera
Cytogenetic Map	11	A3.3	NCBI
cM Map	11	16.79	NCBI

Clhc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	27,843,235 - 27,921,962 (+)	Ensembl
ChiLan1.0	NW_004955424	27,825,865 - 27,923,223 (+)	NCBI	ChiLan1.0	ChiLan1.0

CLHC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	71,093,739 - 71,155,256 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	71,097,691 - 71,159,208 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	55,329,248 - 55,389,678 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	56,470,045 - 56,530,311 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	56,470,051 - 56,530,297 (-)	Ensembl			panPan2	panpan1.1

CLHC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	56,100,740 - 56,132,848 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	56,100,753 - 56,133,103 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	56,057,467 - 56,089,577 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	57,104,780 - 57,136,902 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	57,104,793 - 57,136,850 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	56,806,279 - 56,838,079 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	57,084,577 - 57,117,306 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	57,375,692 - 57,407,787 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Clhc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	26,941,165 - 26,981,157 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	1,596,051 - 1,623,183 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	1,595,917 - 1,630,077 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLHC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	85,992,634 - 86,046,908 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	85,992,307 - 86,046,910 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	90,776,515 - 90,831,108 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLHC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	51,667,176 - 51,731,969 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	51,677,094 - 51,732,116 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	59,984,461 - 60,052,664 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Clhc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624833	6,311,877 - 6,375,045 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Clhc1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	97,171,147 - 97,194,185 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	66
Count of miRNA genes:	61
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000006085
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	74255551	109089856	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	74255551	109089856	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	10	53	150	81	80	49	65	49	6	289	145	8	132	72	87	31	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006085 ⟹ ENSRNOP00000006085

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	107,489,014 - 107,529,665 (+)	Ensembl
mRatBN7.2 Ensembl	14	103,288,134 - 103,328,715 (+)	Ensembl
Rnor_6.0 Ensembl	14	113,968,563 - 114,008,000 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144592 ⟹ ENSRNOP00000108221

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	107,489,040 - 107,529,669 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168050 ⟹ ENSRNOP00000101244

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	107,488,643 - 107,529,666 (+)	Ensembl

RefSeq Acc Id:

NM_001013877 ⟹ NP_001013899

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,489,064 - 107,529,644 (+)	NCBI
mRatBN7.2	14	103,288,134 - 103,328,716 (+)	NCBI
Rnor_6.0	14	113,968,563 - 114,008,001 (+)	NCBI
Rnor_5.0	14	113,634,925 - 113,673,634 (+)	NCBI
RGSC_v3.4	14	110,561,609 - 110,602,190 (+)	RGD
Celera	14	102,164,678 - 102,205,291 (+)	RGD

Sequence:

show sequence

GAATGGCCTCGAAATGGTGTGCTCAACTAAAAATGCCTCAAAAGGCTTTCTTATGCAGCCGATG
CGATCAAGAGGGACTTTACTTTTAAGGGGGCTCGTGGAGCTTGAGAAAAGAGAGGCCCACTAAA
GTTTTTTGGCTTTGTTGCAAAAGAAGGTCAAGGTTTAATTTTTCTCCGTGAACATGCTTGCAGA
TTAAGAGTTATGCCAACCCAAGAAGTAAAGAAACATGCAGTTCTCCCTCCTATCATTAGTAGAA
ATGACAAGGAGTTTTTGGAAAGCATGCAAAGATACATTATTACAGAAACCAAAAGAGTGGGTTG
CAACGAGGAAGGACCTCCTGATGAGTATTACACCATTTACCGAAATGTTTTCGACAAGGTAATA
GACTATGTCAATGCATACAAGTCCGTTCTTACTTCAATCAAAAAAGAATATGATGCCTTTATTG
AGACAGTAAAGAAAGGCCGGAGAAATGCATTTTATCTTCATGGAAAACTTAAAGTTTTGGCAGC
AGAGCCTACAGCGTTGGTGTATCACCAGAGAAGAACAATCCAGCTTGAAGCGAAAATGAGGATT
ATTGATAATAATTCCAAAGCAATTCAATTACAAATAGATCAGATGAAGCAGCTGAGAATGGAGT
ATGAGAATACAGAAGTAAAGCTCTGTGCTTCCTCCAAGCAGCTTTGGAAACCTATCCCAGGGAT
GACCCTCCAAGACTCTGTCAATCTGGACGCTCTCAATAATCATAAGCAGAATCTTGAAGATAAA
TGTAGAAAACTAAAACAAGACATGTCAACAATGTATGTATCAGCCCAAAAGAAAGCTGACCTAG
ATGAGGAAATGATTGTGTTACTAAAACGGCGAGATATAGCTGAAAATCTGAACAAAGACCTGCG
GTTTCGCCATCAAAGATTGCAGGTTATTTCACACACACTTAATTCATGGATGAAGCAGAACATG
AGGATTCCATTTAAAGATGTCTTGGAGAGAATTCAGCAAACCAAAGCTATCTATGGTCATGCAA
AGGTTGTTGATGAGCTATTTGAAGATGACCCAAACAAGACAAAAGAAGCTATAGTTATGCTTTA
CTACATCGAAAGGTTCCATGAATTAATCTCCCTTGGTGAATATGAAAAGGCAGCTTGTTTTGCA
GCAAACAGTCCAAAAAGAATTCTTCAAAATGCTGGTACAATGAATAAATTTAAGGCCATTGGAA
AAGTTAGAGGAAAGCCTCTCCCATTACTCTTGTTTTTTGAGGCTATATTTAATACCAGTCAAGC
TTTCAAACGTGCTATTAATGTTGACCTAACCTTGGAGGGAATCAAATGTGGATTATCTGAGGAA
CGACTTGATTTAGTTACCCACTGGGTTACCCAGGCAAAGCTGACATTTTCTGAGAAGGTTGGCG
ACGCTATTTGTGCTTATGGAGAGCAGCACCCATACCACAAGTCCAAATGCTTGGCGTTAGCTCA
GATTGTCTACAATGAATGTGGGCTACACAAGAAAGCTATTCTTTGCCTGTGTAGACAGGGTCAG
TTTCATGAGGCTATGGAACATATACAACAGTCCAAGGACATTAACACTGATGACCTGATACAGC
TAATAACAGCATGCCCCCAGATTGACTTAATCAGAGGTCTTACTGAAGAAAGGAATGGGAAACC
ACCATTTTTATCTTTTGGGCTTACTGTACTCCATCTGTTTTCTGTGGATATGAAAAAAATTGGC
ATGAAGCTACTTCAGGAAGTCAGTAAAGCTGAGAAAGATGTGATCGAACATCTTGTGATGAGTG
ATTTATTTTGCTCCATAGAAAAGTGGCAAGAACTAGCAAATATATGTTTGCAAAATGGTTTTAA
AAATTTGTCCAATGACATCATGTCCATTCTTCGATCCCAGGCTGGTGTTTCAGAAATTTCCGAA
GATGATACCACCAACGTAATGGAACATGTTTTTTGGTAATTCTTTATTTTAACCACCCGAGGGC
GCTTGTACAACATTTTACAGGCATTGACTTGGGAAGCTGGTTTTAGCATAATTAATTTATAAAT
AAATGTTAAATATAAAGCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008770455 ⟹ XP_008768677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,488,991 - 107,529,667 (+)	NCBI
mRatBN7.2	14	103,288,139 - 103,328,725 (+)	NCBI
Rnor_6.0	14	113,968,570 - 114,008,015 (+)	NCBI

Sequence:

show sequence

CTCGAAATGGTGTGCTCAACTAAAAATGCCTCAAAAGGCTTTCTTATGCAGCCGATGCGATCAA
GAGGGACTTTACTTTTAAGGGGGCTCGTGGAGCTTGAGAAAAGAGAGGTAAAACAAGTCTACCT
GGGAATTGTAGTTTTACACTGCTTTCTTCTTGATAGAACTACTTGTCCCAAGATGCATTTCCAC
AGTTCCGGGATATGTGATTACAGTGTCTAAACTGTGGAATCTGGGTTAGGAGAGATTCAGGCCC
ACTAAAGTTTTTTGGCTTTGTTGCAAAAGAAGGTCAAGGTTTAATTTTTCTCCGTGAACATGCT
TGCAGATTAAGAGTTATGCCAACCCAAGAAGTAAAGAAACATGCAGTTCTCCCTCCTATCATTA
GTAGAAATGACAAGGAGTTTTTGGAAAGCATGCAAAGATACATTATTACAGAAACCAAAAGAGT
GGGTTGCAACGAGGAAGGACCTCCTGATGAGTATTACACCATTTACCGAAATGTTTTCGACAAG
GTAATAGACTATGTCAATGCATACAAGTCCGTTCTTACTTCAATCAAAAAAGAATATGATGCCT
TTATTGAGACAGTAAAGAAAGGCCGGAGAAATGCATTTTATCTTCATGGAAAACTTAAAGTTTT
GGCAGCAGAGCCTACAGCGTTGGTGTATCACCAGAGAAGAACAATCCAGCTTGAAGCGAAAATG
AGGATTATTGATAATAATTCCAAAGCAATTCAATTACAAATAGATCAGATGAAGCAGCTGAGAA
TGGAGTATGAGAATACAGAAGTAAAGCTCTGTGCTTCCTCCAAGCAGCTTTGGAAACCTATCCC
AGGGATGACCCTCCAAGACTCTGTCAATCTGGACGCTCTCAATAATCATAAGCAGAATCTTGAA
GATAAATGTAGAAAACTAAAACAAGACATGTCAACAATGTATGTATCAGCCCAAAAGAAAGCTG
ACCTAGATGAGGAAATGATTGTGTTACTAAAACGGCGAGATATAGCTGAAAATCTGAACAAAGA
CCTGCGGTTTCGCCATCAAAGATTGCAGGTTATTTCACACACACTTAATTCATGGATGAAGCAG
AACATGAGGATTCCATTTAAAGATGTCTTGGAGAGAATTCAGCAAACCAAAGCTATCTATGGTC
ATGCAAAGGTTGTTGATGAGCTATTTGAAGATGACCCAAACAAGACAAAAGAAGCTATAGTTAT
GCTTTACTACATCGAAAGGTTCCATGAATTAATCTCCCTTGGTGAATATGAAAAGGCAGCTTGT
TTTGCAGCAAACAGTCCAAAAAGAATTCTTCAAAATGCTGGTACAATGAATAAATTTAAGGCCA
TTGGAAAAGTTAGAGGAAAGCCTCTCCCATTACTCTTGTTTTTTGAGGCTATATTTAATACCAG
TCAAGCTTTCAAACGTGCTATTAATGTTGACCTAACCTTGGAGGGAATCAAATGTGGATTATCT
GAGGAACGACTTGATTTAGTTACCCACTGGGTTACCCAGGCAAAGCTGACATTTTCTGAGAAGG
TTGGCGACGCTATTTGTGCTTATGGAGAGCAGCACCCATACCACAAGTCCAAATGCTTGGCGTT
AGCTCAGATTGTCTACAATGAATGTGGGCTACACAAGAAAGCTATTCTTTGCCTGTGTAGACAG
GGTCAGTTTCATGAGGCTATGGAACATATACAACAGTCCAAGGACATTAACACTGATGACCTGA
TACAGCTAATAACAGCATGCCCCCAGATTGACTTAATCAGAGGTCTTACTGAAGAAAGGAATGG
GAAACCACCATTTTTATCTTTTGGGCTTACTGTACTCCATCTGTTTTCTGTGGATATGAAAAAA
ATTGGCATGAAGCTACTTCAGGAAGTCAGTAAAGCTGAGAAAGATGTGATCGAACATCTTGTGA
TGAGTGATTTATTTTGCTCCATAGAAAAGTGGCAAGAACTAGCAAATATATGTTTGCAAAATGG
TTTTAAAAATTTGTCCAATGACATCATGTCCATTCTTCGATCCCAGGCTGGTGTTTCAGAAATT
TCCGAAGATGATACCACCAACGTAATGGAACATGTTTTTTGGTAATTCTTTATTTTAACCACCC
GAGGGCGCTTGTACAACATTTTACAGGCATTGACTTGGGAAGCTGGTTTTAGCATAATTAATTT
ATAAATAAATGTTAAATATAAAGCTCTACGCAATAAATCACA

hide sequence

RefSeq Acc Id:

XM_017599141 ⟹ XP_017454630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,488,987 - 107,529,667 (+)	NCBI
mRatBN7.2	14	103,288,146 - 103,328,725 (+)	NCBI
Rnor_6.0	14	113,968,570 - 114,008,015 (+)	NCBI

Sequence:

show sequence

CTCGAAATGGTGTGCTCAACTAAAAATGCCTCAAAAGGCTTTCTTATGCAGCCGATGCGATCAA
GAGGGACTTTACTTTTAAGGGGGCTCGTGGAGCTTGAGAAAAGAGAGGTAAAACAAGTCTACCT
GGGAATTGTAGTTTTACACTGCTTTCTTCTTGATAGAACTACTTGTCCCAAGATGCATTTCCAC
AGTTCCGGGATATGTGATTACAGTGTCTAAACTGTGGAATCTGGGTTAGGAGAGATTCAGGCCC
ACTAAAGTTTTTTGGCTTTGTTGCAAAAGAAGGTCAAGGTTTAATTTTTCTCCGTGAACATGCT
TGCAGATTAAGAGTTATGCCAACCCAAGAAGTAAAGAAACATGCAGTTCTCCCTCCTATCATTA
GTAGAAATGACAAGGAGTTTTTGGAAAGCATGCAAAGATACATTATTACAGAAACCAAAAGAGT
GGGTTGCAACGAGGAAGGACCTCCTGATGAGTATTACACCATTTACCGAAATGTTTTCGACAAG
TGCAGTACTACAGACAGAAAAATATTTCAGGTAATAGACTATGTCAATGCATACAAGTCCGTTC
TTACTTCAATCAAAAAAGAATATGATGCCTTTATTGAGACAGTAAAGAAAGGCCGGAGAAATGC
ATTTTATCTTCATGGAAAACTTAAAGTTTTGGCAGCAGAGCCTACAGCGTTGGTGTATCACCAG
AGAAGAACAATCCAGCTTGAAGCGAAAATGAGGATTATTGATAATAATTCCAAAGCAATTCAAT
TACAAATAGATCAGATGAAGCAGCTGAGAATGGAGTATGAGAATACAGAAGTAAAGCTCTGTGC
TTCCTCCAAGCAGCTTTGGAAACCTATCCCAGGGATGACCCTCCAAGACTCTGTCAATCTGGAC
GCTCTCAATAATCATAAGCAGAATCTTGAAGATAAATGTAGAAAACTAAAACAAGACATGTCAA
CAATGTATGTATCAGCCCAAAAGAAAGCTGACCTAGATGAGGAAATGATTGTGTTACTAAAACG
GCGAGATATAGCTGAAAATCTGAACAAAGACCTGCGGTTTCGCCATCAAAGATTGCAGGTTATT
TCACACACACTTAATTCATGGATGAAGCAGAACATGAGGATTCCATTTAAAGATGTCTTGGAGA
GAATTCAGCAAACCAAAGCTATCTATGGTCATGCAAAGGTTGTTGATGAGCTATTTGAAGATGA
CCCAAACAAGACAAAAGAAGCTATAGTTATGCTTTACTACATCGAAAGGTTCCATGAATTAATC
TCCCTTGGTGAATATGAAAAGGCAGCTTGTTTTGCAGCAAACAGTCCAAAAAGAATTCTTCAAA
ATGCTGGTACAATGAATAAATTTAAGGCCATTGGAAAAGTTAGAGGAAAGCCTCTCCCATTACT
CTTGTTTTTTGAGGCTATATTTAATACCAGTCAAGCTTTCAAACGTGCTATTAATGTTGACCTA
ACCTTGGAGGGAATCAAATGTGGATTATCTGAGGAACGACTTGATTTAGTTACCCACTGGGTTA
CCCAGGCAAAGCTGACATTTTCTGAGAAGGTTGGCGACGCTATTTGTGCTTATGGAGAGCAGCA
CCCATACCACAAGTCCAAATGCTTGGCGTTAGCTCAGATTGTCTACAATGAATGTGGGCTACAC
AAGAAAGCTATTCTTTGCCTGTGTAGACAGGGTCAGTTTCATGAGGCTATGGAACATATACAAC
AGTCCAAGGACATTAACACTGATGACCTGATACAGCTAATAACAGCATGCCCCCAGATTGACTT
AATCAGAGGTCTTACTGAAGAAAGGAATGGGAAACCACCATTTTTATCTTTTGGGCTTACTGTA
CTCCATCTGTTTTCTGTGGATATGAAAAAAATTGGCATGAAGCTACTTCAGGAAGTCAGTAAAG
CTGAGAAAGATGTGATCGAACATCTTGTGATGAGTGATTTATTTTGCTCCATAGAAAAGTGGCA
AGAACTAGCAAATATATGTTTGCAAAATGGTTTTAAAAATTTGTCCAATGACATCATGTCCATT
CTTCGATCCCAGGCTGGTGTTTCAGAAATTTCCGAAGATGATACCACCAACGTAATGGAACATG
TTTTTTGGTAATTCTTTATTTTAACCACCCGAGGGCGCTTGTACAACATTTTACAGGCATTGAC
TTGGGAAGCTGGTTTTAGCATAATTAATTTATAAATAAATGTTAAATATAAAGCTCTACGCAAT
AAATCACA

hide sequence

RefSeq Acc Id:

XM_017599142 ⟹ XP_017454631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,488,988 - 107,529,667 (+)	NCBI
mRatBN7.2	14	103,288,116 - 103,328,725 (+)	NCBI
Rnor_6.0	14	113,968,570 - 114,008,015 (+)	NCBI

Sequence:

show sequence

CTCGAAATGGTGTGCTCAACTAAAAATGCCTCAAAAGGCTTTCTTATGCAGCCGATGCGATCAA
GAGGGACTTTACTTTTAAGGGGGCTCGTGGAGCTTGAGAAAAGAGAGGCCCACTAAAGTTTTTT
GGCTTTGTTGCAAAAGAAGGTCAAGGTTTAATTTTTCTCCGTGAACATGCTTGCAGATTAAGAG
TTATGCCAACCCAAGAAGTAAAGAAACATGCAGTTCTCCCTCCTATCATTAGTAGAAATGACAA
GGAGTTTTTGGAAAGCATGCAAAGATACATTATTACAGAAACCAAAAGAGTGGGTTGCAACGAG
GAAGGACCTCCTGATGAGTATTACACCATTTACCGAAATGTTTTCGACAAGTGCAGTACTACAG
ACAGAAAAATATTTCAGGTAATAGACTATGTCAATGCATACAAGTCCGTTCTTACTTCAATCAA
AAAAGAATATGATGCCTTTATTGAGACAGTAAAGAAAGGCCGGAGAAATGCATTTTATCTTCAT
GGAAAACTTAAAGTTTTGGCAGCAGAGCCTACAGCGTTGGTGTATCACCAGAGAAGAACAATCC
AGCTTGAAGCGAAAATGAGGATTATTGATAATAATTCCAAAGCAATTCAATTACAAATAGATCA
GATGAAGCAGCTGAGAATGGAGTATGAGAATACAGAAGTAAAGCTCTGTGCTTCCTCCAAGCAG
CTTTGGAAACCTATCCCAGGGATGACCCTCCAAGACTCTGTCAATCTGGACGCTCTCAATAATC
ATAAGCAGAATCTTGAAGATAAATGTAGAAAACTAAAACAAGACATGTCAACAATGTATGTATC
AGCCCAAAAGAAAGCTGACCTAGATGAGGAAATGATTGTGTTACTAAAACGGCGAGATATAGCT
GAAAATCTGAACAAAGACCTGCGGTTTCGCCATCAAAGATTGCAGGTTATTTCACACACACTTA
ATTCATGGATGAAGCAGAACATGAGGATTCCATTTAAAGATGTCTTGGAGAGAATTCAGCAAAC
CAAAGCTATCTATGGTCATGCAAAGGTTGTTGATGAGCTATTTGAAGATGACCCAAACAAGACA
AAAGAAGCTATAGTTATGCTTTACTACATCGAAAGGTTCCATGAATTAATCTCCCTTGGTGAAT
ATGAAAAGGCAGCTTGTTTTGCAGCAAACAGTCCAAAAAGAATTCTTCAAAATGCTGGTACAAT
GAATAAATTTAAGGCCATTGGAAAAGTTAGAGGAAAGCCTCTCCCATTACTCTTGTTTTTTGAG
GCTATATTTAATACCAGTCAAGCTTTCAAACGTGCTATTAATGTTGACCTAACCTTGGAGGGAA
TCAAATGTGGATTATCTGAGGAACGACTTGATTTAGTTACCCACTGGGTTACCCAGGCAAAGCT
GACATTTTCTGAGAAGGTTGGCGACGCTATTTGTGCTTATGGAGAGCAGCACCCATACCACAAG
TCCAAATGCTTGGCGTTAGCTCAGATTGTCTACAATGAATGTGGGCTACACAAGAAAGCTATTC
TTTGCCTGTGTAGACAGGGTCAGTTTCATGAGGCTATGGAACATATACAACAGTCCAAGGACAT
TAACACTGATGACCTGATACAGCTAATAACAGCATGCCCCCAGATTGACTTAATCAGAGGTCTT
ACTGAAGAAAGGAATGGGAAACCACCATTTTTATCTTTTGGGCTTACTGTACTCCATCTGTTTT
CTGTGGATATGAAAAAAATTGGCATGAAGCTACTTCAGGAAGTCAGTAAAGCTGAGAAAGATGT
GATCGAACATCTTGTGATGAGTGATTTATTTTGCTCCATAGAAAAGTGGCAAGAACTAGCAAAT
ATATGTTTGCAAAATGGTTTTAAAAATTTGTCCAATGACATCATGTCCATTCTTCGATCCCAGG
CTGGTGTTTCAGAAATTTCCGAAGATGATACCACCAACGTAATGGAACATGTTTTTTGGTAATT
CTTTATTTTAACCACCCGAGGGCGCTTGTACAACATTTTACAGGCATTGACTTGGGAAGCTGGT
TTTAGCATAATTAATTTATAAATAAATGTTAAATATAAAGCTCTACGCAATAAATCACA

hide sequence

RefSeq Acc Id:

XM_039091777 ⟹ XP_038947705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,488,992 - 107,529,667 (+)	NCBI
mRatBN7.2	14	103,298,940 - 103,328,725 (+)	NCBI

RefSeq Acc Id:

XM_039091778 ⟹ XP_038947706

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,488,983 - 107,529,667 (+)	NCBI
mRatBN7.2	14	103,288,116 - 103,328,725 (+)	NCBI

RefSeq Acc Id:

XM_063272988 ⟹ XP_063129058

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,488,987 - 107,529,667 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013899	(Get FASTA)	NCBI Sequence Viewer
	XP_008768677	(Get FASTA)	NCBI Sequence Viewer
	XP_017454630	(Get FASTA)	NCBI Sequence Viewer
	XP_017454631	(Get FASTA)	NCBI Sequence Viewer
	XP_038947705	(Get FASTA)	NCBI Sequence Viewer
	XP_038947706	(Get FASTA)	NCBI Sequence Viewer
	XP_063129058	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83604	(Get FASTA)	NCBI Sequence Viewer
	EDL98036	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006085
	ENSRNOP00000006085.3
	ENSRNOP00000108221
GenBank Protein	Q5XIR8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013899 ⟸ NM_001013877

- UniProtKB:

Q5XIR8 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MPTQEVKKHAVLPPIISRNDKEFLESMQRYIITETKRVGCNEEGPPDEYYTIYRNVFDKVIDYV
NAYKSVLTSIKKEYDAFIETVKKGRRNAFYLHGKLKVLAAEPTALVYHQRRTIQLEAKMRIIDN
NSKAIQLQIDQMKQLRMEYENTEVKLCASSKQLWKPIPGMTLQDSVNLDALNNHKQNLEDKCRK
LKQDMSTMYVSAQKKADLDEEMIVLLKRRDIAENLNKDLRFRHQRLQVISHTLNSWMKQNMRIP
FKDVLERIQQTKAIYGHAKVVDELFEDDPNKTKEAIVMLYYIERFHELISLGEYEKAACFAANS
PKRILQNAGTMNKFKAIGKVRGKPLPLLLFFEAIFNTSQAFKRAINVDLTLEGIKCGLSEERLD
LVTHWVTQAKLTFSEKVGDAICAYGEQHPYHKSKCLALAQIVYNECGLHKKAILCLCRQGQFHE
AMEHIQQSKDINTDDLIQLITACPQIDLIRGLTEERNGKPPFLSFGLTVLHLFSVDMKKIGMKL
LQEVSKAEKDVIEHLVMSDLFCSIEKWQELANICLQNGFKNLSNDIMSILRSQAGVSEISEDDT
TNVMEHVFW

hide sequence

RefSeq Acc Id:	XP_008768677 ⟸ XM_008770455
- Peptide Label:	isoform X2
- UniProtKB:	Q5XIR8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MPTQEVKKHAVLPPIISRNDKEFLESMQRYIITETKRVGCNEEGPPDEYYTIYRNVFDKVIDYV NAYKSVLTSIKKEYDAFIETVKKGRRNAFYLHGKLKVLAAEPTALVYHQRRTIQLEAKMRIIDN NSKAIQLQIDQMKQLRMEYENTEVKLCASSKQLWKPIPGMTLQDSVNLDALNNHKQNLEDKCRK LKQDMSTMYVSAQKKADLDEEMIVLLKRRDIAENLNKDLRFRHQRLQVISHTLNSWMKQNMRIP FKDVLERIQQTKAIYGHAKVVDELFEDDPNKTKEAIVMLYYIERFHELISLGEYEKAACFAANS PKRILQNAGTMNKFKAIGKVRGKPLPLLLFFEAIFNTSQAFKRAINVDLTLEGIKCGLSEERLD LVTHWVTQAKLTFSEKVGDAICAYGEQHPYHKSKCLALAQIVYNECGLHKKAILCLCRQGQFHE AMEHIQQSKDINTDDLIQLITACPQIDLIRGLTEERNGKPPFLSFGLTVLHLFSVDMKKIGMKL LQEVSKAEKDVIEHLVMSDLFCSIEKWQELANICLQNGFKNLSNDIMSILRSQAGVSEISEDDT TNVMEHVFW hide sequence

RefSeq Acc Id:	XP_017454630 ⟸ XM_017599141
- Peptide Label:	isoform X1
- UniProtKB:	A6JQB9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPTQEVKKHAVLPPIISRNDKEFLESMQRYIITETKRVGCNEEGPPDEYYTIYRNVFDKCSTTD RKIFQVIDYVNAYKSVLTSIKKEYDAFIETVKKGRRNAFYLHGKLKVLAAEPTALVYHQRRTIQ LEAKMRIIDNNSKAIQLQIDQMKQLRMEYENTEVKLCASSKQLWKPIPGMTLQDSVNLDALNNH KQNLEDKCRKLKQDMSTMYVSAQKKADLDEEMIVLLKRRDIAENLNKDLRFRHQRLQVISHTLN SWMKQNMRIPFKDVLERIQQTKAIYGHAKVVDELFEDDPNKTKEAIVMLYYIERFHELISLGEY EKAACFAANSPKRILQNAGTMNKFKAIGKVRGKPLPLLLFFEAIFNTSQAFKRAINVDLTLEGI KCGLSEERLDLVTHWVTQAKLTFSEKVGDAICAYGEQHPYHKSKCLALAQIVYNECGLHKKAIL CLCRQGQFHEAMEHIQQSKDINTDDLIQLITACPQIDLIRGLTEERNGKPPFLSFGLTVLHLFS VDMKKIGMKLLQEVSKAEKDVIEHLVMSDLFCSIEKWQELANICLQNGFKNLSNDIMSILRSQA GVSEISEDDTTNVMEHVFW hide sequence

RefSeq Acc Id:	XP_017454631 ⟸ XM_017599142
- Peptide Label:	isoform X1
- UniProtKB:	A6JQB9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPTQEVKKHAVLPPIISRNDKEFLESMQRYIITETKRVGCNEEGPPDEYYTIYRNVFDKCSTTD RKIFQVIDYVNAYKSVLTSIKKEYDAFIETVKKGRRNAFYLHGKLKVLAAEPTALVYHQRRTIQ LEAKMRIIDNNSKAIQLQIDQMKQLRMEYENTEVKLCASSKQLWKPIPGMTLQDSVNLDALNNH KQNLEDKCRKLKQDMSTMYVSAQKKADLDEEMIVLLKRRDIAENLNKDLRFRHQRLQVISHTLN SWMKQNMRIPFKDVLERIQQTKAIYGHAKVVDELFEDDPNKTKEAIVMLYYIERFHELISLGEY EKAACFAANSPKRILQNAGTMNKFKAIGKVRGKPLPLLLFFEAIFNTSQAFKRAINVDLTLEGI KCGLSEERLDLVTHWVTQAKLTFSEKVGDAICAYGEQHPYHKSKCLALAQIVYNECGLHKKAIL CLCRQGQFHEAMEHIQQSKDINTDDLIQLITACPQIDLIRGLTEERNGKPPFLSFGLTVLHLFS VDMKKIGMKLLQEVSKAEKDVIEHLVMSDLFCSIEKWQELANICLQNGFKNLSNDIMSILRSQA GVSEISEDDTTNVMEHVFW hide sequence

Ensembl Acc Id:

ENSRNOP00000006085 ⟸ ENSRNOT00000006085

RefSeq Acc Id:	XP_038947706 ⟸ XM_039091778
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038947705 ⟸ XM_039091777
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063129058 ⟸ XM_063272988
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000108221 ⟸ ENSRNOT00000144592

Ensembl Acc Id:

ENSRNOP00000101244 ⟸ ENSRNOT00000168050

Protein Domains

Translin-associated factor X-interacting protein

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIR8-F1-model_v2	AlphaFold	Q5XIR8	1-585	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699536

Promoter ID:

EPDNEW_R10059

Type:

initiation region

Name:

Clhc1_1

Description:

clathrin heavy chain linker domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	113,968,558 - 113,968,618	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307937	AgrOrtholog
BioCyc Gene	G2FUF-14648	BioCyc
Ensembl Genes	ENSRNOG00000004456	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000006085	ENTREZGENE
	ENSRNOT00000006085.6	UniProtKB/Swiss-Prot
	ENSRNOT00000144592	ENTREZGENE
Gene3D-CATH	1.25.40.30	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7133284	IMAGE-MGC_LOAD
InterPro	ARM-type_fold	UniProtKB/Swiss-Prot
	Clathrin_H-chain_linker	UniProtKB/Swiss-Prot
	CLHC1	UniProtKB/Swiss-Prot
	TSNAXIP1_N	UniProtKB/Swiss-Prot
KEGG Report	rno:289865	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94354	IMAGE-MGC_LOAD
NCBI Gene	289865	ENTREZGENE
PANTHER	CLATHRIN HEAVY CHAIN RELATED	UniProtKB/Swiss-Prot
	PTHR10292:SF11	UniProtKB/Swiss-Prot
Pfam	Clathrin_H_link	UniProtKB/Swiss-Prot
	TSNAXIP1_N	UniProtKB/Swiss-Prot
PhenoGen	Clhc1	PhenoGen
PIRSF	Clathrin_H-chain-rel	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000004456	RatGTEx
Superfamily-SCOP	SSF48371	UniProtKB/Swiss-Prot
UniProt	A0ABK0LK27_RAT	UniProtKB/TrEMBL
	A6JQB9	ENTREZGENE, UniProtKB/TrEMBL
	CLHC1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-10	Clhc1	clathrin heavy chain linker domain containing 1	RGD1307937	similar to hypothetical protein FLJ31438	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1307937	similar to hypothetical protein FLJ31438	RGD1307937_predicted	similar to hypothetical protein FLJ31438 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1307937_predicted	similar to hypothetical protein FLJ31438 (predicted)	LOC289865_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC289865_predicted	similar to hypothetical protein FLJ31438 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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