Mtmr12 (myotubularin related protein 12) - Rat Genome Database

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Gene: Mtmr12 (myotubularin related protein 12) Rattus norvegicus
Analyze
Symbol: Mtmr12
Name: myotubularin related protein 12
RGD ID: 1307902
Description: Predicted to be located in sarcomere and sarcoplasmic reticulum. Predicted to be active in cytoplasm and membrane. Orthologous to human MTMR12 (myotubularin related protein 12); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: inactive phosphatidylinositol 3-phosphatase 12; LOC310155; MGC109012; myotubularin-related protein 12; phosphatidylinositol 3-phosphatase-associated protein; phosphatidylinositol-3-phosphatase associated protein; phosphatidylinositol-3-phosphatase-associated protein; Pip3ap
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8262,950,722 - 63,020,319 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl262,950,819 - 63,020,319 (+)EnsemblGRCr8
mRatBN7.2261,223,714 - 61,293,270 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl261,223,851 - 61,293,197 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx268,360,139 - 68,424,321 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0266,473,254 - 66,537,665 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0261,474,712 - 61,539,129 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0262,236,497 - 62,305,995 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl262,236,577 - 62,303,919 (+)Ensemblrn6Rnor6.0
Rnor_5.0282,383,865 - 82,452,904 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4261,665,059 - 61,729,291 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera257,406,567 - 57,470,784 (-)NCBICelera
RGSC_v3.1261,593,291 - 61,657,523 (+)NCBI
Cytogenetic Map2q16NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)
membrane  (IBA)
sarcomere  (IEA)
sarcoplasmic reticulum  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16787938   PMID:23716698   PMID:30053369  


Genomics

Comparative Map Data
Mtmr12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8262,950,722 - 63,020,319 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl262,950,819 - 63,020,319 (+)EnsemblGRCr8
mRatBN7.2261,223,714 - 61,293,270 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl261,223,851 - 61,293,197 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx268,360,139 - 68,424,321 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0266,473,254 - 66,537,665 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0261,474,712 - 61,539,129 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0262,236,497 - 62,305,995 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl262,236,577 - 62,303,919 (+)Ensemblrn6Rnor6.0
Rnor_5.0282,383,865 - 82,452,904 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4261,665,059 - 61,729,291 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera257,406,567 - 57,470,784 (-)NCBICelera
RGSC_v3.1261,593,291 - 61,657,523 (+)NCBI
Cytogenetic Map2q16NCBI
MTMR12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38532,227,007 - 32,312,939 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl532,226,994 - 32,313,013 (-)Ensemblhg38GRCh38
GRCh37532,227,113 - 32,313,045 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36532,262,868 - 32,348,871 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34532,262,868 - 32,348,832NCBI
Celera532,108,592 - 32,194,879 (-)NCBICelera
Cytogenetic Map5p13.3NCBI
HuRef532,194,163 - 32,280,094 (-)NCBIHuRef
CHM1_1532,228,743 - 32,314,719 (-)NCBICHM1_1
T2T-CHM13v2.0532,340,660 - 32,426,631 (-)NCBIT2T-CHM13v2.0
Mtmr12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391512,205,056 - 12,272,326 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1512,205,114 - 12,274,582 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381512,204,970 - 12,272,240 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1512,205,028 - 12,274,496 (+)Ensemblmm10GRCm38
MGSCv371512,134,849 - 12,201,995 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361512,149,819 - 12,216,965 (+)NCBIMGSCv36mm8
Celera1512,009,814 - 12,051,732 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.9NCBI
Mtmr12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542618,093,843 - 18,146,148 (-)Ensembl
ChiLan1.0NW_00495542618,093,843 - 18,152,013 (-)NCBIChiLan1.0ChiLan1.0
MTMR12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2477,991,229 - 78,076,867 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1576,144,859 - 76,230,497 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0578,021,379 - 78,107,029 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1583,404,193 - 83,489,556 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl583,419,703 - 83,490,944 (+)EnsemblpanPan2panpan1.1
MTMR12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1475,166,758 - 75,220,084 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl475,146,379 - 75,217,730 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha474,784,080 - 74,857,834 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0475,667,297 - 75,740,673 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl475,667,273 - 75,740,670 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1475,404,241 - 75,477,740 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0475,533,312 - 75,606,674 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0476,063,656 - 76,137,018 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mtmr12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213222,837,256 - 222,916,192 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365188,455,621 - 8,534,697 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365188,455,669 - 8,534,583 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1618,461,129 - 18,537,908 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11618,461,120 - 18,537,893 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MTMR12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1431,515,499 - 31,602,391 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl431,513,721 - 31,602,256 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607121,742,848 - 21,829,471 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtmr12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475922,233,237 - 22,305,919 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475922,233,633 - 22,305,715 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mtmr12
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13168,818,577 - 168,888,806 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mtmr12
666 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:53
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000036633
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)261556902106556902Rat
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25838820177302351Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)261051883104684275Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23675034481750344Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)261051541105724065Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)240306867124537199Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)241801363104744824Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24490435585286097Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)244537979112567334Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)261051541105724065Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)25126685996266859Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)260861391105861391Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23686864381868643Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)24490435589904355Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)23326999678269996Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)261051541143746880Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000036633   ⟹   ENSRNOP00000036677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl262,950,889 - 63,020,319 (+)Ensembl
mRatBN7.2 Ensembl261,223,851 - 61,293,197 (+)Ensembl
Rnor_6.0 Ensembl262,236,577 - 62,303,919 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112203   ⟹   ENSRNOP00000078948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl262,977,587 - 63,020,319 (+)Ensembl
mRatBN7.2 Ensembl261,250,538 - 61,293,197 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114002   ⟹   ENSRNOP00000082096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl262,950,889 - 63,020,319 (+)Ensembl
mRatBN7.2 Ensembl261,223,851 - 61,293,197 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000130139   ⟹   ENSRNOP00000111042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl262,950,819 - 63,019,046 (+)Ensembl
RefSeq Acc Id: NM_001012077   ⟹   NP_001012077
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,950,889 - 63,015,146 (+)NCBI
mRatBN7.2261,223,836 - 61,288,097 (+)NCBI
Rnor_6.0262,236,590 - 62,300,822 (+)NCBI
Rnor_5.0282,383,865 - 82,452,904 (-)NCBI
RGSC_v3.4261,665,059 - 61,729,291 (+)RGD
Celera257,406,567 - 57,470,784 (-)RGD
Sequence:
RefSeq Acc Id: NM_001415035   ⟹   NP_001401964
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,950,889 - 63,020,319 (+)NCBI
mRatBN7.2261,223,836 - 61,293,270 (+)NCBI
RefSeq Acc Id: XM_017590832   ⟹   XP_017446321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,950,818 - 63,020,312 (+)NCBI
mRatBN7.2261,223,767 - 61,293,266 (+)NCBI
Rnor_6.0262,236,497 - 62,305,995 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039102200   ⟹   XP_038958128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,978,405 - 63,020,312 (+)NCBI
mRatBN7.2261,251,356 - 61,293,266 (+)NCBI
RefSeq Acc Id: XM_039102201   ⟹   XP_038958129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,950,722 - 63,020,312 (+)NCBI
mRatBN7.2261,223,714 - 61,293,266 (+)NCBI
RefSeq Acc Id: XM_039102202   ⟹   XP_038958130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,981,493 - 63,020,312 (+)NCBI
mRatBN7.2261,223,778 - 61,293,266 (+)NCBI
RefSeq Acc Id: XM_039102203   ⟹   XP_038958131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8262,998,012 - 63,020,312 (+)NCBI
mRatBN7.2261,270,962 - 61,293,266 (+)NCBI
RefSeq Acc Id: NP_001012077   ⟸   NM_001012077
- Peptide Label: isoform 2
- UniProtKB: Q5FVM6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017446321   ⟸   XM_017590832
- Peptide Label: isoform X1
- UniProtKB: A0A8L2QJ51 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000036677   ⟸   ENSRNOT00000036633
RefSeq Acc Id: XP_038958129   ⟸   XM_039102201
- Peptide Label: isoform X3
- UniProtKB: A6KJQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958130   ⟸   XM_039102202
- Peptide Label: isoform X3
- UniProtKB: A6KJQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958128   ⟸   XM_039102200
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958131   ⟸   XM_039102203
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZUA7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000078948   ⟸   ENSRNOT00000112203
Ensembl Acc Id: ENSRNOP00000082096   ⟸   ENSRNOT00000114002
RefSeq Acc Id: NP_001401964   ⟸   NM_001415035
- Peptide Label: isoform 1
- UniProtKB: Q5FVM6 (UniProtKB/Swiss-Prot),   A0A8L2QJ51 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111042   ⟸   ENSRNOT00000130139
Protein Domains
Myotubularin phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVM6-F1-model_v2 AlphaFold Q5FVM6 1-748 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691194
Promoter ID:EPDNEW_R1719
Type:initiation region
Name:Mtmr12_1
Description:myotubularin related protein 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0262,236,560 - 62,236,620EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307902 AgrOrtholog
BioCyc Gene G2FUF-54046 BioCyc
Ensembl Genes ENSRNOG00000022929 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000036633 ENTREZGENE
  ENSRNOT00000114002 ENTREZGENE
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7325487 IMAGE-MGC_LOAD
InterPro MTMR12 UniProtKB/Swiss-Prot
  MTMR12-like_C UniProtKB/Swiss-Prot
  Myotubularin-like_Pase_dom UniProtKB/Swiss-Prot
  Myotubularin_fam UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot
KEGG Report rno:310155 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109012 IMAGE-MGC_LOAD
NCBI Gene 310155 ENTREZGENE
PANTHER PTHR10807 UniProtKB/Swiss-Prot
  PTHR10807:SF37 UniProtKB/Swiss-Prot
Pfam 3-PAP UniProtKB/Swiss-Prot
  Myotub-related UniProtKB/Swiss-Prot
PhenoGen Mtmr12 PhenoGen
PROSITE PPASE_MYOTUBULARIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000022929 RatGTEx
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
  SSF52799 UniProtKB/Swiss-Prot
UniProt A0A8I5ZMD5_RAT UniProtKB/TrEMBL
  A0A8I5ZUA7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QJ51 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M607_RAT UniProtKB/TrEMBL
  A6KJQ2 ENTREZGENE, UniProtKB/TrEMBL
  MTMRC_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Mtmr12  myotubularin related protein 12  Pip3ap  phosphatidylinositol-3-phosphatase associated protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Pip3ap  phosphatidylinositol-3-phosphatase associated protein  Pip3ap_predicted  phosphatidylinositol-3-phosphatase associated protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Pip3ap_predicted  phosphatidylinositol-3-phosphatase associated protein (predicted)      Symbol and Name status set to approved 70820 APPROVED