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Gene: Ptpn14 (protein tyrosine phosphatase, non-receptor type 14) Rattus norvegicus

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Symbol:

Ptpn14

Name:

protein tyrosine phosphatase, non-receptor type 14

RGD ID:

1307885

Description:

Predicted to enable protein tyrosine phosphatase activity; receptor tyrosine kinase binding activity; and transcription coregulator activity. Predicted to be involved in lymphangiogenesis; negative regulation of cell population proliferation; and regulation of protein export from nucleus. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human PTPN14 (protein tyrosine phosphatase non-receptor type 14); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC305064; tyrosine-protein phosphatase non-receptor type 14

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	103,799,473 - 103,951,708 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	103,799,494 - 103,951,708 (+)	Ensembl				GRCr8
mRatBN7.2	13	101,268,258 - 101,420,508 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	101,268,416 - 101,414,088 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	103,783,686 - 103,935,894 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	105,172,446 - 105,324,667 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	102,370,728 - 102,530,217 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	108,689,916 - 108,841,593 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	108,696,336 - 108,841,511 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	113,306,394 - 113,456,734 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	106,004,935 - 106,150,162 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	100,754,468 - 100,899,677 (+)	NCBI		Celera
RGSC_v3.1	13	106,207,851 - 106,339,059 (+)	NCBI
Cytogenetic Map	13	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

basal cell carcinoma (ISO)

Choanal Atresia and Lymphedema (ISO)

esophageal atresia/tracheoesophageal fistula (ISO)

neuroblastoma (ISO)

Recurrence (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bromobenzene (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calyculin A (ISO)

cannabidiol (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dieldrin (ISO)

diethyl maleate (ISO)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fenamidone (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

genistein (EXP)

hypochlorous acid (ISO)

indometacin (ISO)

ketoconazole (ISO)

L-methionine (ISO)

lead diacetate (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methyl-N-nitrosourea (ISO)

N-nitrosodiethylamine (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

succimer (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

torcetrapib (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lymphangiogenesis (IBA,IEA,ISO)

negative regulation of cell population proliferation (IEA,ISO)

positive regulation of hippo signaling (IBA)

regulation of protein export from nucleus (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

cytoskeleton (IEA)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

Molecular Function

hydrolase activity (IEA)

phosphoprotein phosphatase activity (IEA)

protein binding (ISO)

protein tyrosine phosphatase activity (IBA,IEA,ISO)

receptor tyrosine kinase binding (IEA,ISO)

transcription coregulator activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10934049	PMID:20826270	PMID:22525271	PMID:22948661	PMID:30361391

Genomics

Comparative Map Data

Ptpn14
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	103,799,473 - 103,951,708 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	103,799,494 - 103,951,708 (+)	Ensembl				GRCr8
mRatBN7.2	13	101,268,258 - 101,420,508 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	101,268,416 - 101,414,088 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	103,783,686 - 103,935,894 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	105,172,446 - 105,324,667 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	102,370,728 - 102,530,217 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	108,689,916 - 108,841,593 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	108,696,336 - 108,841,511 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	113,306,394 - 113,456,734 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	106,004,935 - 106,150,162 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	100,754,468 - 100,899,677 (+)	NCBI		Celera
RGSC_v3.1	13	106,207,851 - 106,339,059 (+)	NCBI
Cytogenetic Map	13	q26	NCBI

PTPN14
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	214,348,700 - 214,551,602 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	214,348,700 - 214,552,449 (-)	Ensembl			hg38	GRCh38
GRCh37	1	214,522,043 - 214,724,945 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	212,597,634 - 212,791,265 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	210,919,405 - 211,113,037	NCBI
Celera	1	187,744,922 - 187,948,451 (-)	NCBI		Celera
Cytogenetic Map	1	q32.3-q41	NCBI
HuRef	1	185,197,160 - 185,400,149 (-)	NCBI		HuRef
CHM1_1	1	215,794,413 - 215,997,321 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	213,588,194 - 213,791,283 (-)	NCBI		T2T-CHM13v2.0

Ptpn14
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	189,460,417 - 189,608,892 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	189,460,465 - 189,608,892 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	189,728,216 - 189,876,695 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	189,728,268 - 189,876,695 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	191,552,147 - 191,700,574 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	191,487,431 - 191,571,095 (+)	NCBI		MGSCv36	mm8
Celera	1	196,636,477 - 196,787,232 (+)	NCBI		Celera
Cytogenetic Map	1	H6	NCBI
cM Map	1	95.03	NCBI

Ptpn14
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	3,368,694 - 3,456,437 (+)	Ensembl
ChiLan1.0	NW_004955406	3,368,833 - 3,463,170 (+)	NCBI	ChiLan1.0	ChiLan1.0

PTPN14
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	34,849,262 - 35,053,561 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	34,815,239 - 35,016,066 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	189,925,706 - 190,120,232 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	194,772,573 - 194,974,151 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	194,780,068 - 194,887,798 (-)	Ensembl			panPan2	panpan1.1

PTPN14
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	12,335,327 - 12,454,992 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	12,342,277 - 12,486,204 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	11,917,031 - 12,089,594 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	12,045,325 - 12,225,483 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	12,053,022 - 12,196,693 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	11,968,818 - 12,148,661 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	12,073,011 - 12,253,097 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	12,197,276 - 12,377,823 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ptpn14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	61,729,049 - 61,904,921 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936628	3,739,152 - 3,907,662 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936628	3,739,223 - 3,916,157 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PTPN14
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	129,055,698 - 129,248,578 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	129,114,668 - 129,248,898 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	142,083,595 - 142,138,242 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PTPN14
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	15,023,914 - 15,228,680 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	15,110,687 - 15,219,492 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	15,498,133 - 15,703,629 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ptpn14
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	19,495,821 - 19,573,568 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	19,489,069 - 19,625,328 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ptpn14
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	67,797,609 - 67,942,067 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ptpn14
1299 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	198
Count of miRNA genes:	148
Interacting mature miRNAs:	156
Transcripts:	ENSRNOT00000004632
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

D13Rat51

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	101,339,738 - 101,339,893 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	108,770,533 - 108,770,687	NCBI	Rnor6.0
Rnor_5.0	13	113,387,011 - 113,387,165	UniSTS	Rnor5.0
RGSC_v3.4	13	106,075,835 - 106,076,220	RGD	RGSC3.4
RGSC_v3.4	13	106,075,880 - 106,076,034	UniSTS	RGSC3.4
Celera	13	100,825,348 - 100,825,502	UniSTS
RGSC_v3.1	13	106,264,984 - 106,265,138	RGD
RH 3.4 Map	13	695.0	RGD
RH 3.4 Map	13	695.0	UniSTS
RH 2.0 Map	13	741.1	RGD
FHH x ACI Map	13	60.04	RGD
Cytogenetic Map	13	q27	UniSTS

D13Rat158

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	103,870,920 - 103,871,130 (+)	Marker Load Pipeline
mRatBN7.2	13	101,339,717 - 101,339,927 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	108,770,499 - 108,770,708	NCBI	Rnor6.0
Rnor_5.0	13	113,386,977 - 113,387,186	UniSTS	Rnor5.0
RGSC_v3.4	13	106,075,858 - 106,076,068	RGD	RGSC3.4
RGSC_v3.4	13	106,075,859 - 106,076,068	UniSTS	RGSC3.4
Celera	13	100,825,327 - 100,825,536	UniSTS
RGSC_v3.1	13	106,264,962 - 106,265,172	RGD
FHH x ACI Map	13	59.8799	UniSTS
FHH x ACI Map	13	59.8799	RGD
Cytogenetic Map	13	q27	UniSTS

D13Got100

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	101,406,405 - 101,406,579 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	108,703,845 - 108,704,018	NCBI	Rnor6.0
Rnor_5.0	13	113,320,323 - 113,320,496	UniSTS	Rnor5.0
RGSC_v3.4	13	106,142,479 - 106,142,651	RGD	RGSC3.4
RGSC_v3.4	13	106,142,480 - 106,142,653	UniSTS	RGSC3.4
Celera	13	100,891,995 - 100,892,168	UniSTS
RGSC_v3.1	13	106,331,583 - 106,331,755	RGD
RH 3.4 Map	13	695.1	UniSTS
RH 3.4 Map	13	695.1	RGD
RH 2.0 Map	13	737.5	RGD
Cytogenetic Map	13	q27	UniSTS

RH137834

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	101,396,242 - 101,396,395 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	108,714,027 - 108,714,179	NCBI	Rnor6.0
Rnor_5.0	13	113,330,505 - 113,330,657	UniSTS	Rnor5.0
RGSC_v3.4	13	106,132,319 - 106,132,471	UniSTS	RGSC3.4
Celera	13	100,881,834 - 100,881,986	UniSTS
RH 3.4 Map	13	699.7	UniSTS
Cytogenetic Map	13	q27	UniSTS

d13mit13

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	101,356,778 - 101,356,884 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	108,753,536 - 108,753,641	NCBI	Rnor6.0
Rnor_5.0	13	113,370,014 - 113,370,119	UniSTS	Rnor5.0
RGSC_v3.4	13	106,092,857 - 106,092,962	UniSTS	RGSC3.4
Celera	13	100,842,388 - 100,842,493	UniSTS
RH 3.4 Map	13	703.0	UniSTS
Cytogenetic Map	13	q27	UniSTS
Cytogenetic Map	17	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	88	59	6	352	188	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001401364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004632 ⟹ ENSRNOP00000004632

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	103,799,494 - 103,951,708 (+)	Ensembl
mRatBN7.2 Ensembl	13	101,268,416 - 101,414,088 (+)	Ensembl
Rnor_6.0 Ensembl	13	108,696,336 - 108,841,482 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086775 ⟹ ENSRNOP00000072308

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	103,799,494 - 103,951,708 (+)	Ensembl
mRatBN7.2 Ensembl	13	101,268,416 - 101,414,088 (+)	Ensembl
Rnor_6.0 Ensembl	13	108,696,384 - 108,841,511 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103853 ⟹ ENSRNOP00000094738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	101,394,455 - 101,414,088 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109677 ⟹ ENSRNOP00000082964

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	101,268,416 - 101,414,088 (+)	Ensembl

RefSeq Acc Id:

NM_001401364 ⟹ NP_001388293

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	103,799,494 - 103,951,708 (+)	NCBI
mRatBN7.2	13	101,268,280 - 101,420,508 (+)	NCBI

RefSeq Acc Id:

XM_017598837 ⟹ XP_017454326

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	103,799,473 - 103,951,708 (+)	NCBI
mRatBN7.2	13	101,268,258 - 101,420,508 (+)	NCBI
Rnor_6.0	13	108,689,916 - 108,841,593 (-)	NCBI

Sequence:

show sequence

CGCTCGGGCTCTCCCGAGGCTCAAGTTCTGCACAACTTCTCCCCGCTGCCCAGCGCCTCGGCCG
CGGGCCCGGCCAGCTAGCTGCGCTCCTCGGCTCAGCCGACTCGTCCATAGGGCAGGTCCTCGTG
GAGCATCTGGTGCCAAGTGGCTGCTGGCGGTCCCTCTCTGCGCCCCACCTCTCCGATCGCCCCG
GTCCCCTCGCGCGGGACGGCGGTGCTCAGGTTCTTGGCCCTTTCTCCTCCCGGGTGCGCCCAGC
GCGGCGGCCGCTGCGTAACCCTCCCTGCGCCCCTCCTCTGCCTGCTTCTAGAAGCCAGTGGTGG
GGACCTAGACTCGCTGATGGTCAACGTGCGGCACCCGGGTCACTCCCGGGCCATGTAAGCAGGG
TCCAGTACATCCTGCCGGAAAAAGCTCCTTGGTGCAGGAGAGGTTGTCCAGTCACCTCTATGAG
GGACTTCTTCACTGGGCTGAAGTGTATATGCCTAGTGGTTGCTCCTGGCCAAGACACCAGATCT
CCAGCCTTCAGGTGTCTTAAGCTGCTGTCCTGCAGAGACCCTGGTGGGCATGGACATCTTTTTC
TGTACCTTAGTGTGACGGCCCCAACACAAAATTACCAAGGCCATCTCAGGGGTGCCCGTGCCAG
GAGTGGAGGGCGGCGTCCCCGGGCCGCAGAGCCATGCCTTTCGGCCTGAAGCTCCGCAGGACCC
GGCGCTACAATGTCCTGAGCAAGAACTGCTTTGTTACCCGGATCCGCCTGCTGGACAGCAATGT
CATCGAGTGCACACTGTCCGTGGAAAGCACAGGACAAGAGTGCCTTGAGGCGGTGGCCCAGAGG
CTGGAGCTGAGGGAGACCCACTACTTTGGCCTTTGGTTTCTCAGCAAGAGTCAGCAGGCAAGAT
GGGTGGAGCTGGAGAAGCCGCTGAAGAAACATCTGGACAAGTTCGCTAACGAGCCTCTGCTTTT
CTTCGGAGTCATGTTCTATGTGCCAAGTGTGTCACGGCTTCAGCAGGAGGCCACAAGATATCAG
TATTACCTGCAAGTCAAAAAAGATGTGCTTGAAGGGCGGTTGCGGTGCTCCCTGGAACAAGTGA
TCCGGCTGGCTGGCTTAGCTGTGCAAGCTGACTTCGGAGACTATAACCAGTTTGACTCCCAGGA
ATTCCTCCGAGAGTATGTGCTTTTTCCTATGGACTTGGCCATGGAGGAGGCTGCTCTGGAGGAG
CTGACCCAGAAGGTGGCCCAGGAGCACAAAGCCCACAGCGGGATCCTACCGGCAGAAGCTGAGC
TGATGTATATCAACGAGGTAGAGCGTTTGGATGGATTCGGACAGGAGATCTTCCCAGTGAAGGA
CAGTCATGGCAACAGCATGCACCTTGGCATTTTCTTTATGGGGATTTTCGTGAGGAACAGGATT
GGAAGACAGGCAGTAATATACAGGTGGAATGACATCGGGACTGTTACCCACAGCAAAGCAGCCA
TCCTGCTGGAGCTGATTGACAAGGAGGAGACCGCACTCTTCCACACAGATGATATTGAAAATGC
CAAGTATATTTCTCGGTTATTTACCACACGGCACAAATTTTACAAACAGAACAAGATCTGCACT
GAGCAGTCAAATTCTCCACCACCGATCAGACGCCAGCCCACCTGGAGCCGCTCCTCACTGCCAA
GGCAGCAGCCGTATATCCTGCCTCCCATGCATGTCCAGTGCAGTGAGCACTACTCGGAGACCCA
TACTTCCCAAGACAGTATCTTTCCTGGGAATGAAGAAGCCTTGTACTGCAATTCTCACAACAGC
CTGGACCTAAATTACTTGAATGGCACCGTCACCAATGGCAGCGTGTGCAGCGTTCACAGCATCA
ACTCCCTCAGCTGCTCCCAAAGCTTCATCCAGGCGTCTCCAGTGTCCTCCAACCTCAGCATCCC
AGGAAGTGACATCATGAGGGCCGATTACATCCCCAGCCACCGCCACAGCACCATCATCGTGCCG
TCCTACAGGCCGACCCCAGACTACGAGACAGTCATGCGGCAGATGAAGAGGGGGCTGCTGCACG
CGGACAGCCAGAGCCGGTCTCTGCGGAATCTCAACATCATCAACACCCACGCCTACAACCAGCC
CGAGGAACTGGTGTACAGCCAGCCAGAGATGCGGGAGAGGCACCCCTACACGGTCCCGTACGCA
CCCCAGGGGGGCTATGGTCACAAACTTGTTAGTCCATCTGACCAGGTGAACCCCCAAAATAGTG
CGATGCCTAGCAAGCCAGGGGCCGGCTCCATCTCGCACACAGTGAGCACTCCAGAACTGGCCAA
CATGCAGCTCCAAGGAGCCCAGCACTACAGCACGGCCCACATGCTCAAGAACTATCTCTTTAGG
CCGCCGCCCCCTTACCCCAGGCCCCGCCCTGCCACCAGCACCCCAGACCTCGCCAGCCACCGCC
ACAAGTACGTCAGCGGCAGCAGCCCTGATCTGGTAACTCGCAAAGTGCAGCTCTCTGTGAAGAC
CTTCCAGGAGGACAGCTCTCCCGTGGTCCATCAGTCTCTGCAGGAGGTGAGCGAACCCCTCACT
GCCACCAAGCACCATGGCGGGGGTGGTGGCGCGGTGAACAAACGCCACAGCCTGGAGGTGATGA
ACAGCATGGTGCGAGGCATGGAGGCCATGACGCTCAAGTCGCTCAATATCCCCATGGCTCGACG
CAACACACTTCGGGAGCAGGGCCCTTCCGAGGAGGCCGGCGGCCACGACGTGCATGGCCTCCCC
CAGTATCACCACAAGAAGACCTTCTCGGATGCCACCATGCTGATCCACAGCAGTGAGAGCGAGG
AGGAGGAGGAGGCCCCGGAGGCAGCACCTCAGATTCCCGAGCTCCGGGAGAAAGTAGAATACAG
TGCCCAGCTGCAGGCCGCCCTGGCCCGCATTCCCAGCAGGCCCCCACCTGAGTACCCAGGGCCA
AGAAAAAGCGTCAGTAATGGGACGCTGAGACAGGACCAGGGGACCCTCCTTCCTGCCATGGCCA
GGGCCAGGGTGCTGAGACATGGACCAGCCAAGGCCCTCAGTGTCTCCCGGGCCGAGCAGCTAGC
TGTCAACGGGGCCTCTCTGGGCCCCTCCATCTCTGAGCCTGACCTAACCAGCGTGAAGGAGCGG
GTCAAGAAAGAACCTGTGAAGGAAAGGCCGGTGTCAGAGATGTTCTCCCTGGAGGACAGCATTA
TAGAGAGAGAGATGATGATTAGGAATCTGGAGAAGCAGAAGATGACGGGCCTGCAGGCACAGAA
GAGACCGCTGATGTTAGCAGCACTCAATGGGCTCTCAGTGGCCCGAGTCTCGGGGCGGGAAGAT
GGTCGCCATGATGTCACCCGAGTCCCCATGGATGAGAGGCTCAGAGCCCTGAAGAAGAAGCTGG
AAGATGGAATGGTGTTCACGGAGTACGAGCAGATCCCGAACAAAAAGGCCAATGGCATCTTCAG
CACCGCCACTCTGCCCGAAAATGCTGAGCGCAGCCGGATCCGAGAAGTCGTCCCTTATGAGGAG
AATCGAGTGGAGCTCATCCCGACCAAAGAAAACAACACCGGCTACATCAACGCCTCCCACATCA
AGGTGGTGGTTGGTGGATCAGAATGGCACTACATTGCCACCCAGGGGCCCTTGCCACATACATG
CCATGACTTCTGGCAGATGGTGTGGGAGCAGGGGGTGAATGTGATCGCCATGGTCACTGCAGAG
GAGGAGGGTGGACGGACCAAAAGCCATCGATACTGGCCCAAACTGGGGTCCAAGCACAGCTCAG
CCACCTACGGCAAGTTCAAGGTCACCACCAAGTTCCGGACAGATTCTGGTTGCTATGCAACCAC
GGGCCTAAAGGTGAAGCACCTGCTCTCGGGGCAGGAGAGGACGGTGTGGCACTTGCAGTACACC
GACTGGCCCCACCACGGATGCCCAGAGGATGTCCAAGGATTTTTGTCCTACTTGGAGGAAATCC
AGTCAGTCAGACGCCACACCAACAGCGTGCTGGAAGGCGTCAAGACCAGGCACCCCCCCATCGT
GGTTCACTGCAGCGCAGGGGTGGGAAGGACCGGCGTGGTGATTCTCTCCGAGCTCATGATCTAC
TGCCTAGAGCATAATGAAAAGGTGGAGGTGCCCACGATGCTGAGATTCCTCAGGGAGCAGAGGA
TGTTCATGATCCAGACCATCGCGCAGTACAAGTTCGTCTACCAAGTCCTCGTCCAGTTCCTGCA
GAATTCCAGGCTCATCTGATCTCCCCGGATGCAGCTTCTGGAGGAGGGACCCAGCTCTGTCCTG
CAGGGGGCGCCGCACCCAGACAACATCCGCCTCCCCGCCCAGCTGGAGGCGGATGGCTGGCAGC
AGGCAGGAGCCAGAGTTCCTTATAGGCGTCATGCGTTATTTTTATGAGATAATTTATTTTTTCC
CCTCTTTGGAATAAGTTCTGCGCGTTATTATAATGCTTTTTCCCCCCACGATAATATAGTGCTT
CTCATTCGAACCACGCGTTGACTGATCTGCAGTGGAAGCCCCCGGGAGGGAAGGTGGTGGCGCC
ATGGGACTTTGTAGACACAGAGGCATAAGGGAAAGCATCTCTAGTGAAGTTGCAGACAAATCAA
TGGTGCCCCCAGTCAGAAGTGGCAAGAGAAAGAACTCATCCTCAGCTGGAGGGGGGAGAGAGCC
AAGGTCCTCGGAAGTGTTCCTTTACACGCTGGGTTCGTGCACCGAGCTGGGTGGCTGCTTTTCT
CTCCTTCGCTTCCTCCCTAAGCCTAGGTGAAAGGTGGGATCGGCTGGAGAGCGCAGAGCCTCTA
AGGGCGGTCATGATGTCTTCGGTGATGGGGGCGCTATTGTCTGTGCCCCTCACCCTTGTTCTGG
TTCAGAAGTCTGATAGGTGATGGGCGGTGGGGTGGGTATCTGCCGCTACATCTCCCATGCCCAC
AGCACGGTAGTCTGGTAGCCCTGGGCCAGGCCATCTGCAAAGCTCAGCCCTTTGCCTGATTGTG
AGAAAATAACACACCAGTAGGAATGGAGTTGGGCGTGGCCTTGCTGTGGATTCTTACGTTCACA
ACGTTGAGCGTGGTGGGTGGCGACGTAGGAGATGAAGTTTAGGTACACTCCATCTTCCTATCCG
TTCCTAAGTTGTTAGAAGCTTCTAAAGGGAAATGGGGAAGCTGGGAGATGTCCGGCACATAGTA
GGGCCCTGGACAGCACATAGTAGGGCCCTGGCCAGGAGGCACACACCTTTGTCCAACTCACCGT
GTGCTGCTGAGTTGATTCTTCTTAGGGCTTCCTCGTTGTCCTGATGCGGGGTTCCCGGATGATC
TTGAATTTGCTGTGTAGCTGGGAGGGTGACCCCGAGTCTTCCCGTCTCCTCTTCCCAAGTGCTG
TGATTTCAGGTGTGTCCCACCACACACAGGCCACCCTTGCCCCTTGTGACGAATGCTGAGGCTG
CCTCTTGCCAAACTTTCCACCACCCTTTTCCTGTGTAGCCCAGTCTGGTCAGTGACGGCGTCAA
CCGCGTTCGATTCGAAGCCCAGTTTCCTGCCTGTGTCTGCTTTTTCTCTGAGTGTAATTTTCTG
AGTTTGTGGAACTGACCGCGTCAGGGCTTCCTCCACAGTTCCATTTTCCCTGTGTTTTTTCCTG
AGCTGAAAGGACAAACCAGAAAGTGCGTATCTTTGTGGCTTCTGTCCCCACACGTTAGTGAATG
CTTATGACAGCAGATTCCCCATTAATTCCTCTGGAAGGTGAGCAAAGCAACCACTGGGCCAGGG
TGGTGCTGGTGCTGATGTTGCTACGGCATCTGTGGGCTCAGAATCTGTAGGAGGCGTGTCCATC
CCCCCTTCCACCAGGTGAATTGAAATGAGGCGCCCAGGTGTATGGAGCCTTGTGGGCCTAGGGT
ACTGTGTTAAACTCTGACATAGGTATTTTGGGGGAAATGTTAGAGTATTAAGGGTAGGGAAGTC
TCTTTTAACTTCCTTTGACAATGTTTCCCCTCTTATGTGTCCTGACTGTCGGTCCCACGAATGG
TTTCATTATGTGACGGAGAACACTAATCCTTGCCTGTTGTCTCTAAGCTTTAGTTGGTCAGAAT
GTCTCCAATGGGCCTCGAGGAGATACGAAACCCCTCTGAACTTGTCCCTTGGGCTGTTTCTACC
AATGCTAGAAGGAAAGGGTACAGGGAAGATGTCAGTTTGCTATCCAACTTCCTAGCCAACACAT
GATGAGACCCAAAGGAAAACATTTAAGTGTCCTGCGTACATATTCCATTCTTAGACACAGTTGC
TTCTGGTTCTTCAATGCATTCCGAATCCCTTTCCCATCCCCAGTCAAGTCCCCATGGATCTCTG
GTTAAATTATCATCAGGCATTTAAAGTGGCATCTGTATGATTGCCCAGAGATGCTTTTCTGTCT
GGGAAGTTAGCCAAGGAATAAACCTTGAAGCAAAGCGTATTAAATTAGTTCTCTGGTTAGGACT
TTTGGAAAGGTTTTCTACGATGCTTGGGGAACCGGAGCTGTCAGGGCCCCCCCATTGCTGTAGT
TTGGATTCGAAGTGGGGGGGGGAATTAAACAGCCGAGCTCGCCGGCCATGGTTTCGAGGTTTTC
CAGTCATACCGCTCTCTTCTCTCACACACACTCATCTGCCTGTGTCCACCTTCGCCCTGGTTCA
GGGGTCTCCACATCCTGGTCGCTCAACGTGGTGTCTTCTTTCCTGAGATTGCGAGTTGTGTTAA
AGGCGGGGGTTGCGGAGCGTCAGGCTGAGTTGTGGCTGGTCTTACGGGGTCTCTGCAGTGACTT
TAGGTAGAGTCTCCGGGGGCCGCACATCTGCCTGTACTCCTTCTTCAGTAGAGGAGAGAACAGT
GTTAGGCATTCGGGTCGCTTTATTGAGGAGGAGACAAATGGGCTCCTCTGCTCACTTGAAGAAG
AGCCGCAGTTACTAGGGAGGCTGAGTGTGTCTCACGTGGGCCGCATCCAGTAATAAGCTTTGAT
TTAAGGTGCTTGCTTTGGGAGACTTTTACTGCTATAAGAGAGGGCTTCTACTCAGTTAGAAGCA
AGATGTCATCCCGTACCCCCAACCCCCACTCCAGTCTTGGGCTCTCTCAGCCACCTCCACTTCA
GGACATGGTCCTCATGGGACGCAGCCACCACCAGCTTCTAAGCAAGCTGTTCCTGACTTGTGCT
TCCAGCTACGACCTCCTGTGGGTCATCGCCTCCCTATCTTTTCTAGTTTAAGGCAGATGGACCT
GTGGTGAATTTCCAGCCTGACTGAAAGCATGCCACTTGTTTCTTCCCCAGTTCAGGAAAGGTGT
CCCGCCATCTGTCTTTTCTACAGCTAAGCTAGTGGACACAGAACTGGTTCTTTCTGACCCCGCC
ACCCAGCCATGCTGGCCTTTCATCTGGTTGGGCTGGGAGGTACCCCCGAATGGTGACAGGCTGG
CTTGACAGATGTGTCGTCTTCTGTCACCTCCTGTAAGCTCAGGCCAGACATGTTTGACAACGAG
TTGAAGGTAGCAAGTGCCCTGCACCTTCCAGGCTCTCTCACCTCTCGTGGCATGTCTGGTGGAG
AGAGCAAATCCAGCTCATTGAGTTCTGTTTGGAGATGTGCCAGTTACGTGAGGTAGAGAGGGCA
AAAAAACACCAGGACGTTCTAGAATAAACTCAAGGGACATTATTCATTTCTTCTCAGTATTAGG
AAATGAGCTGTCCACGGAGTGCCCTGTCACTGCCGTCGAGCCCTCAGCTGCACTTAACAAAGAT
TCTGCCCCTGCTGCTTCCAGCCAGCATTCTAGCCAGGCGGCCACCAAGTTCTCATTCGGTGTTG
TCTCTCCCTGAGTGGTAGCTCTGACTCCCTCAGCTTTGAGCGGAGAGCTCTGGGTCTCCCGTAG
GAATGGCATAGTCCCTGGTGACCTATGGCTTGTTGAGTGACAGATGAGTCGGCTCTGGAGGGTG
GAGTCAGTCACAGTTAGCCCCGGAGGGTCATTGCAGCCTGAAAATGCCTTCGCCTCGCTTCTGA
GTCCGTTGGTGGCAAATCACCTTGGGGAAATATGAGGGTGTGCTGCCAACCCATGCAGATGTCA
CCCATTCTAGGGGAGCTGGAACCCGGGTCCAGCAGCTTGTCCAGTATCCATCCTGTCTTCCCTG
TCCTCAGCTTCTGCATTTCTGTTACACCTTAGGGGAAGTGAGGGTTTTTACCCAGTGTGTCCAG
TCCTCCATGGCCTTAATACGATTAATACGGCACACTGTGTTTCTCAGACTCTCACTGGCCCGTT
GCTGCTAGCCTGTTCGTGGCCAGGCACTGGGGATCTGGCACCCCTCGATCTCATAGGTGGATAA
CGCACTGCCGTTTGGAGGCCGGGCCTTGCGGTTCAGAGCTGTGTTCCGTCTCCTCATCTTAGAG
ATAAGTGAAAGGATGTTTGGTTGTCTGGCGGGAGGGTTGGAGCAAACGCCAGCCTAAGCATGTC
CAACTGTTACCTAGACAGCGACTCTTCTGCTATGGGCTTGCCAGCAGGACCAGCGCTTGTCCAA
AGACAGTGGGGAGGTTAGATCACCCCCGAATTTCTTACCCAAAGTTTATTGGGCATAAAATGTT
TTGGACCCTGCAGCAGTGATGTCAGAGTTGGAAACGATGATACAACACCCCAGGGAAGGCTGTG
ATCCAGTGTTGAGATCGACTTCTCCCGGGCTCCTGGCCTGCTCCCCGTACTGGGTTGTCACATG
TGGCCCTTGCATCTGGGCAGTTGCTTTGGAGACTCCTTGCCCGATACTGCACGCCTGTGAGCAG
GGTTCTGCCCCTGCAATGTTACATCCACGCTTAGCATTCCCAGTCTCCCTTGCTGGTGAGTGCC
TGTGCGAGCCATGTTTATCCAAACACGGTGAGGGTGAGTGTTCTGGTGCGGGGACGGGGCGGTG
CCCCTGTGCAATTCCACTGTCTGCATTCCAGGTCACTTTGTCTATTCAGATACCACCAACTCTC
CTTGCTTGTTTGCTTGCTTTCCAGACCAGCTCTCTGAAGCTCCCTCTTAATTTTTTCCTGCCTG
GCCACGGAGCGGGCAAGAGGACCATGGTCTTGAACCTCTCTAAAATGTCCATGGAGGAATTCTT
AATTTAAGAAGGAATGACTCCATGCCTTTGGGGTTGGATAGGGAATAGGATCTGGGAAATGAGT
GTCCAAAACGAGTTGGGGAGAAGACTTCTTACAACCAGGCCTCCTGTCCTGAGGTGCAGCACCG
TCCCTCAGTACCAGAAGAGAGAGGAAAAGGACGAATATTAGTTCGATTAGAAATAACATTGGCA
GCAGGCTTCCTGTTTATTACAGGTGCCCCAACAGGCTTTAGGACGAGAGCGCTGGTGTGCAGTC
TAACTACCCCTGGCTCGCCTGGACTGTTTGCTCCAGTCTCCCTGGTCAGCTGGTGGGACAGGTG
CACTGCAGGGCTTCCCAGGGAGCCCCACAGGGTGTGCTATGATCGACGGCTAATGCAGAATAAG
CTATCTGCCTAGCCTCCTGCCTTATTAAGTTTTCTTCTCCAACCTCTTCCTTCAGGGACACAAA
CTCTTTTGGGTGGAAAGCAGAGAGTAGAGGAGCCATCAGTGCCTTGGGGTGGGACCTCACACTA
AACCCTCAGGAATGCTGCTTGAGCATGGCCAGGTGGCGTTCTTGGCATTTCTCTGGGGCCTCCG
CCTCCCTCGGTGCAGTGCTAGCTAATAAATACCTTGAGCATTGAACTGAAAACTCTTTCCTTCC
GAGCCATTTTATTTAGACTCAAAGGCTGTAAAGTTTTACTGCAATTTCCTTTGAAGTTCTTCGC
CACTATTGGTAGTCCTAAAATTCTTCAACCACATTCTTTCAGATACAAGCCCACACTTCCTTAG
AGATGATTTCCACTGTATGCCCTCTGTCCCTCAGTGGTCAGCTGACCTGGCTGAGGGTTCCCTG
GGGAGGTTCCACGTGCAGATGACTATTGAAAGTGTAACCTTTTGTGACGTGTTACATAATAACT
GGCTACTTTGCTTCACCAGTCCTTCACTCTTTTGTTCAGTATTTTGATGCTTGCGTTTTGGTTG
TTTCTGTCAGATGTTGTGAATTTTGGTTTCCTTCAAAATAATTGACATTTGATGGTTTTTATTT
TGAAATGATGCACAGACACCCCCACCCTCAGCTTAGAAACCAGCTTTCTTTAGGGTTCTTGGGT
CAGCCCACAGAAGCCTACAGACCTCCGCCATGGCTGGAAGGCAGTGCTATGCCAGATGTGGTTG
GCTTTTATGGGCTTGCACATGGGCTAGCAGCACCCACTATGTTGTAAGCTGTGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGCATTCCAGGTTGGGACTCAGC
ACCTAGTCCATGGCAGTTGCCGACTGAGACGGCTGTCAAACCTCTCTCCTCGCAAACTGCACCT
GAGGACCGGGGACAGAGGAGACAAGAGGACGACATTCCTTCCTAAGTTACCAATTATCACGTTG
ACTGTACTTTGGCAGAGACTCTCCGTCACGTGGATAATATTAAAAGCCCTAAATAAAGTTATGC
ATGCTGTTGTTCATCAGTAACAAGCGTTTGCCTGCCAGCCTCTGCCACAGACAGCTCTGAGGTG
TAGGGTGCTGGCTTTTGACAGTATTCTTTTGCACTGTTCCCTCTTTCTACGAAGTCTTATTTAG
GTAACAGTCCTAGAGGATGTTGTCTCTGTCCTTGTCGTTGCTGTAAAATGTTTCCTATGTGCCT
TTACAAATGTGAGGTCTTTATTCTAACCCCCCCTTTTTTGTAAAAGATATCTATTGATTTCTAC
ATGCAATAAACCTTGTTTTGAGAGAAAA

hide sequence

RefSeq Acc Id:

XM_039090827 ⟹ XP_038946755

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	103,828,344 - 103,951,708 (+)	NCBI
mRatBN7.2	13	101,297,521 - 101,420,508 (+)	NCBI

RefSeq Acc Id:

XM_039090828 ⟹ XP_038946756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	103,799,473 - 103,951,708 (+)	NCBI
mRatBN7.2	13	101,268,258 - 101,420,508 (+)	NCBI

RefSeq Acc Id:

XM_039090829 ⟹ XP_038946757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	103,861,173 - 103,951,708 (+)	NCBI
mRatBN7.2	13	101,329,982 - 101,420,508 (+)	NCBI

RefSeq Acc Id:

XM_063272390 ⟹ XP_063128460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	103,859,646 - 103,951,708 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001388293	(Get FASTA)	NCBI Sequence Viewer
	XP_017454326	(Get FASTA)	NCBI Sequence Viewer
	XP_038946755	(Get FASTA)	NCBI Sequence Viewer
	XP_038946756	(Get FASTA)	NCBI Sequence Viewer
	XP_038946757	(Get FASTA)	NCBI Sequence Viewer
	XP_063128460	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94965	(Get FASTA)	NCBI Sequence Viewer
	EDL94966	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004632.3
	ENSRNOP00000072308
	ENSRNOP00000072308.1

RefSeq Acc Id:	XP_017454326 ⟸ XM_017598837
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K2N0 (UniProtKB/TrEMBL), A0A8I5ZVY1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPFGLKLRRTRRYNVLSKNCFVTRIRLLDSNVIECTLSVESTGQECLEAVAQRLELRETHYFGL WFLSKSQQARWVELEKPLKKHLDKFANEPLLFFGVMFYVPSVSRLQQEATRYQYYLQVKKDVLE GRLRCSLEQVIRLAGLAVQADFGDYNQFDSQEFLREYVLFPMDLAMEEAALEELTQKVAQEHKA HSGILPAEAELMYINEVERLDGFGQEIFPVKDSHGNSMHLGIFFMGIFVRNRIGRQAVIYRWND IGTVTHSKAAILLELIDKEETALFHTDDIENAKYISRLFTTRHKFYKQNKICTEQSNSPPPIRR QPTWSRSSLPRQQPYILPPMHVQCSEHYSETHTSQDSIFPGNEEALYCNSHNSLDLNYLNGTVT NGSVCSVHSINSLSCSQSFIQASPVSSNLSIPGSDIMRADYIPSHRHSTIIVPSYRPTPDYETV MRQMKRGLLHADSQSRSLRNLNIINTHAYNQPEELVYSQPEMRERHPYTVPYAPQGGYGHKLVS PSDQVNPQNSAMPSKPGAGSISHTVSTPELANMQLQGAQHYSTAHMLKNYLFRPPPPYPRPRPA TSTPDLASHRHKYVSGSSPDLVTRKVQLSVKTFQEDSSPVVHQSLQEVSEPLTATKHHGGGGGA VNKRHSLEVMNSMVRGMEAMTLKSLNIPMARRNTLREQGPSEEAGGHDVHGLPQYHHKKTFSDA TMLIHSSESEEEEEAPEAAPQIPELREKVEYSAQLQAALARIPSRPPPEYPGPRKSVSNGTLRQ DQGTLLPAMARARVLRHGPAKALSVSRAEQLAVNGASLGPSISEPDLTSVKERVKKEPVKERPV SEMFSLEDSIIEREMMIRNLEKQKMTGLQAQKRPLMLAALNGLSVARVSGREDGRHDVTRVPMD ERLRALKKKLEDGMVFTEYEQIPNKKANGIFSTATLPENAERSRIREVVPYEENRVELIPTKEN NTGYINASHIKVVVGGSEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRY WPKLGSKHSSATYGKFKVTTKFRTDSGCYATTGLKVKHLLSGQERTVWHLQYTDWPHHGCPEDV QGFLSYLEEIQSVRRHTNSVLEGVKTRHPPIVVHCSAGVGRTGVVILSELMIYCLEHNEKVEVP TMLRFLREQRMFMIQTIAQYKFVYQVLVQFLQNSRLI hide sequence

Ensembl Acc Id:

ENSRNOP00000004632 ⟸ ENSRNOT00000004632

Ensembl Acc Id:

ENSRNOP00000072308 ⟸ ENSRNOT00000086775

RefSeq Acc Id:	XP_038946756 ⟸ XM_039090828
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K2N0 (UniProtKB/TrEMBL), A0A8I5ZVY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946755 ⟸ XM_039090827
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K2N0 (UniProtKB/TrEMBL), A0A8I5ZVY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946757 ⟸ XM_039090829
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZVY1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000082964 ⟸ ENSRNOT00000109677

Ensembl Acc Id:

ENSRNOP00000094738 ⟸ ENSRNOT00000103853

RefSeq Acc Id:	NP_001388293 ⟸ NM_001401364
- UniProtKB:	A0A0G2K2N0 (UniProtKB/TrEMBL), A0A8I5ZVY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128460 ⟸ XM_063272390
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K2N0 (UniProtKB/TrEMBL), A0A8I5ZVY1 (UniProtKB/TrEMBL)

Protein Domains

FERM Tyrosine specific protein phosphatases Tyrosine-protein phosphatase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K2N0-F1-model_v2	AlphaFold	A0A0G2K2N0	1-1189	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699110

Promoter ID:

EPDNEW_R9632

Type:

initiation region

Name:

Ptpn14_1

Description:

protein tyrosine phosphatase, non-receptor type 14

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	108,841,597 - 108,841,657	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307885	AgrOrtholog
BioCyc Gene	G2FUF-16900	BioCyc
Ensembl Genes	ENSRNOG00000003407	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004632.6	UniProtKB/TrEMBL
	ENSRNOT00000086775	ENTREZGENE
	ENSRNOT00000086775.3	UniProtKB/TrEMBL
Gene3D-CATH	1.20.80.10	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
	3.90.190.10	UniProtKB/TrEMBL
	Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1	UniProtKB/TrEMBL
InterPro	Band_41_domain	UniProtKB/TrEMBL
	FERM/acyl-CoA-bd_prot_3-hlx	UniProtKB/TrEMBL
	FERM_2	UniProtKB/TrEMBL
	FERM_central	UniProtKB/TrEMBL
	FERM_CS	UniProtKB/TrEMBL
	FERM_domain	UniProtKB/TrEMBL
	FERM_N	UniProtKB/TrEMBL
	FERM_PH-like_C	UniProtKB/TrEMBL
	PH/PTB_dom	UniProtKB/TrEMBL
	Prot-tyrosine_phosphatase-like	UniProtKB/TrEMBL
	Tyr/Dual-sp_Pase	UniProtKB/TrEMBL
	Tyr_Pase_AS	UniProtKB/TrEMBL
	Tyr_Pase_cat	UniProtKB/TrEMBL
	Tyr_Pase_non-rcpt_typ-14/21	UniProtKB/TrEMBL
	Tyr_Pase_rcpt/non-rcpt	UniProtKB/TrEMBL
	Ubiquitin-rel_dom	UniProtKB/TrEMBL
NCBI Gene	305064	ENTREZGENE
PANTHER	TYROSINE-PROTEIN PHOSPHATASE	UniProtKB/TrEMBL
	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 14	UniProtKB/TrEMBL
Pfam	FERM_C	UniProtKB/TrEMBL
	FERM_M	UniProtKB/TrEMBL
	FERM_N	UniProtKB/TrEMBL
	Y_phosphatase	UniProtKB/TrEMBL
PhenoGen	Ptpn14	PhenoGen
PIRSF	Tyr-Ptase_nr14	UniProtKB/TrEMBL
PRINTS	BAND41	UniProtKB/TrEMBL
	PRTYPHPHTASE	UniProtKB/TrEMBL
PROSITE	FERM_1	UniProtKB/TrEMBL
	FERM_2	UniProtKB/TrEMBL
	FERM_3	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_1	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_2	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_PTP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003407	RatGTEx
SMART	B41	UniProtKB/TrEMBL
	FERM_C	UniProtKB/TrEMBL
	PTPc	UniProtKB/TrEMBL
	PTPc_motif	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	SSF47031	UniProtKB/TrEMBL
	SSF52799	UniProtKB/TrEMBL
	SSF54236	UniProtKB/TrEMBL
UniProt	A0A0G2K2N0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZVY1	ENTREZGENE
	D3ZSL5_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Ptpn14_predicted	protein tyrosine phosphatase, non-receptor type 14 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ptpn14_predicted	protein tyrosine phosphatase, non-receptor type 14 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM