Zfyve26 (zinc finger FYVE-type containing 26) - Rat Genome Database

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Gene: Zfyve26 (zinc finger FYVE-type containing 26) Rattus norvegicus
Analyze
Symbol: Zfyve26
Name: zinc finger FYVE-type containing 26
RGD ID: 1307820
Description: Predicted to enable phosphatidylinositol-3-phosphate binding activity and protein kinase binding activity. Predicted to be involved in double-strand break repair via homologous recombination and regulation of cytokinesis. Predicted to act upstream of or within autophagosome organization and lysosome organization. Predicted to be located in early endosome; late endosome; and lysosome. Predicted to be active in centrosome and midbody. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 15. Orthologous to human ZFYVE26 (zinc finger FYVE-type containing 26); INTERACTS WITH 2,6-dinitrotoluene; bisphenol A; copper atom.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC314265; zinc finger FYVE domain-containing protein 26; zinc finger, FYVE domain containing 26
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86103,764,864 - 103,828,520 (-)NCBIGRCr8
mRatBN7.2698,031,874 - 98,095,538 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl698,032,520 - 98,095,480 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx698,461,986 - 98,524,896 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0698,761,123 - 98,824,042 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0698,147,489 - 98,210,530 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06102,409,235 - 102,472,962 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,409,881 - 102,472,926 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06115,096,555 - 115,158,874 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46101,999,868 - 102,065,689 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16102,005,042 - 102,068,617 (-)NCBI
Celera696,417,537 - 96,480,524 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IBA,IEA,ISO,ISS)
early endosome  (IEA,ISO)
late endosome  (IEA,ISO)
lysosomal membrane  (IEA)
lysosome  (IEA,ISO)
midbody  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17897319   PMID:20208530   PMID:20613862  


Genomics

Comparative Map Data
Zfyve26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86103,764,864 - 103,828,520 (-)NCBIGRCr8
mRatBN7.2698,031,874 - 98,095,538 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl698,032,520 - 98,095,480 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx698,461,986 - 98,524,896 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0698,761,123 - 98,824,042 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0698,147,489 - 98,210,530 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06102,409,235 - 102,472,962 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,409,881 - 102,472,926 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06115,096,555 - 115,158,874 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46101,999,868 - 102,065,689 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16102,005,042 - 102,068,617 (-)NCBI
Celera696,417,537 - 96,480,524 (-)NCBICelera
Cytogenetic Map6q24NCBI
ZFYVE26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381467,728,892 - 67,816,590 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1467,727,374 - 67,816,590 (-)EnsemblGRCh38hg38GRCh38
GRCh371468,213,239 - 68,283,307 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361467,282,992 - 67,353,055 (-)NCBINCBI36Build 36hg18NCBI36
Build 341467,282,991 - 67,353,055NCBI
Celera1448,272,248 - 48,342,326 (-)NCBICelera
Cytogenetic Map14q24.1NCBI
HuRef1448,382,789 - 48,452,623 (-)NCBIHuRef
CHM1_11468,151,990 - 68,222,021 (-)NCBICHM1_1
T2T-CHM13v2.01461,936,011 - 62,023,694 (-)NCBIT2T-CHM13v2.0
Zfyve26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391279,279,120 - 79,343,102 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1279,279,120 - 79,343,078 (-)EnsemblGRCm39 Ensembl
GRCm381279,232,346 - 79,296,323 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1279,232,346 - 79,296,304 (-)EnsemblGRCm38mm10GRCm38
MGSCv371280,333,334 - 80,397,269 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361280,151,184 - 80,215,144 (-)NCBIMGSCv36mm8
Celera1280,696,398 - 80,760,261 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1235.51NCBI
Zfyve26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554662,390,527 - 2,451,664 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554662,389,893 - 2,453,487 (+)NCBIChiLan1.0ChiLan1.0
ZFYVE26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21568,856,915 - 68,926,905 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11468,073,426 - 68,143,395 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01448,326,517 - 48,396,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11467,204,320 - 67,274,206 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1467,206,236 - 67,273,580 (-)Ensemblpanpan1.1panPan2
ZFYVE26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1841,714,654 - 41,777,996 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl841,715,485 - 41,777,422 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha841,405,539 - 41,468,887 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0841,944,386 - 42,007,919 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl841,945,145 - 42,007,904 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1841,560,366 - 41,623,694 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0841,633,774 - 41,697,573 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0841,993,171 - 42,056,531 (-)NCBIUU_Cfam_GSD_1.0
Zfyve26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864063,000,221 - 63,059,676 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649511,134,138 - 11,190,863 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649511,132,025 - 11,191,446 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFYVE26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl791,518,452 - 91,590,449 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1791,518,444 - 91,590,480 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2797,825,811 - 97,898,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFYVE26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12444,986,610 - 45,053,801 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2444,986,609 - 45,053,134 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605333,215,301 - 33,282,636 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfyve26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473433,175,041 - 33,238,664 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473433,175,080 - 33,240,484 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfyve26
485 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:816
Count of miRNA genes:322
Interacting mature miRNAs:416
Transcripts:ENSRNOT00000016380
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)689762877106752806Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat

Markers in Region
RH130880  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2698,032,535 - 98,032,754 (+)MAPPERmRatBN7.2
Rnor_6.06102,409,897 - 102,410,115NCBIRnor6.0
Rnor_5.06115,096,571 - 115,096,789UniSTSRnor5.0
RGSC_v3.46101,999,884 - 102,000,102UniSTSRGSC3.4
Celera696,417,553 - 96,417,771UniSTS
RH 3.4 Map6691.9UniSTS
Cytogenetic Map6q24UniSTS
RH135341  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2698,034,016 - 98,034,210 (+)MAPPERmRatBN7.2
Rnor_6.06102,411,378 - 102,411,571NCBIRnor6.0
Rnor_5.06115,098,052 - 115,098,245UniSTSRnor5.0
RGSC_v3.46102,001,365 - 102,001,558UniSTSRGSC3.4
Celera696,419,034 - 96,419,227UniSTS
RH 3.4 Map6692.3UniSTS
Cytogenetic Map6q24UniSTS
BF406060  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2698,051,457 - 98,051,676 (+)MAPPERmRatBN7.2
Rnor_6.06102,428,829 - 102,429,047NCBIRnor6.0
Rnor_5.06115,115,204 - 115,115,422UniSTSRnor5.0
RGSC_v3.46102,018,789 - 102,019,007UniSTSRGSC3.4
Celera696,436,470 - 96,436,688UniSTS
RH 3.4 Map3720.9UniSTS
Cytogenetic Map6q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 10 3 17 3 20 3 27 10
Low 3 37 47 38 2 38 8 11 54 32 14 1 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000079351   ⟹   ENSRNOP00000074087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl698,032,520 - 98,095,480 (-)Ensembl
Rnor_6.0 Ensembl6102,409,881 - 102,472,926 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107207   ⟹   ENSRNOP00000078943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl698,032,520 - 98,095,480 (-)Ensembl
RefSeq Acc Id: NM_001108038   ⟹   NP_001101508
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,765,510 - 103,828,463 (-)NCBI
mRatBN7.2698,032,520 - 98,095,480 (-)NCBI
Rnor_6.06102,409,881 - 102,472,926 (-)NCBI
Rnor_5.06115,096,555 - 115,158,874 (-)NCBI
RGSC_v3.46101,999,868 - 102,065,689 (-)RGD
Celera696,417,537 - 96,480,524 (-)RGD
Sequence:
RefSeq Acc Id: XM_039112291   ⟹   XP_038968219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,764,864 - 103,828,520 (-)NCBI
mRatBN7.2698,031,874 - 98,095,538 (-)NCBI
RefSeq Acc Id: XM_039112292   ⟹   XP_038968220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,764,864 - 103,828,520 (-)NCBI
mRatBN7.2698,034,239 - 98,095,538 (-)NCBI
RefSeq Acc Id: XM_063261931   ⟹   XP_063118001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,764,864 - 103,828,520 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001101508   ⟸   NM_001108038
- UniProtKB: D3ZB97 (UniProtKB/Swiss-Prot),   D3ZBA4 (UniProtKB/Swiss-Prot),   D4A8G9 (UniProtKB/Swiss-Prot),   A0A8I5ZLS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074087   ⟸   ENSRNOT00000079351
RefSeq Acc Id: XP_038968219   ⟸   XM_039112291
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K770 (UniProtKB/TrEMBL),   A0A8I5ZLS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968220   ⟸   XM_039112292
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZLS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078943   ⟸   ENSRNOT00000107207
RefSeq Acc Id: XP_063118001   ⟸   XM_063261931
- Peptide Label: isoform X3
Protein Domains
FYVE-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A8G9-F1-model_v2 AlphaFold D4A8G9 1-2542 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694693
Promoter ID:EPDNEW_R5218
Type:multiple initiation site
Name:Zfyve26_1
Description:zinc finger FYVE-type containing 26
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06102,472,929 - 102,472,989EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307820 AgrOrtholog
BioCyc Gene G2FUF-36968 BioCyc
Ensembl Genes ENSRNOG00000059875 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000079351.2 UniProtKB/TrEMBL
  ENSRNOT00000107207 ENTREZGENE
  ENSRNOT00000107207.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ZFYVE26 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:314265 UniProtKB/Swiss-Prot
NCBI Gene 314265 ENTREZGENE
PANTHER PTHR46591 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfyve26 PhenoGen
PROSITE ZF_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000059875 RatGTEx
SMART FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K770 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZLS5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZB97 ENTREZGENE
  D3ZBA4 ENTREZGENE
  D4A8G9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary D3ZB97 UniProtKB/Swiss-Prot
  D3ZBA4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-19 Zfyve26  zinc finger FYVE-type containing 26  Zfyve26  zinc finger, FYVE domain containing 26  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zfyve26  zinc finger, FYVE domain containing 26   Zfyve26_predicted  zinc finger, FYVE domain containing 26 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zfyve26_predicted  zinc finger, FYVE domain containing 26 (predicted)      Symbol and Name status set to approved 70820 APPROVED