Zfyve1 (zinc finger FYVE-type containing 1) - Rat Genome Database

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Gene: Zfyve1 (zinc finger FYVE-type containing 1) Rattus norvegicus
Analyze
Symbol: Zfyve1
Name: zinc finger FYVE-type containing 1
RGD ID: 1307795
Description: Predicted to enable phosphatidylinositol binding activity and phosphatidylinositol-3,4-bisphosphate binding activity. Predicted to be involved in several processes, including cellular response to starvation; host-mediated activation of viral genome replication; and lipid droplet formation. Predicted to be located in several cellular components, including autophagosome; mitochondria-associated endoplasmic reticulum membrane contact site; and omegasome. Predicted to be extrinsic component of omegasome membrane. Predicted to be active in lipid droplet. Orthologous to human ZFYVE1 (zinc finger FYVE-type containing 1); INTERACTS WITH 3-chloropropane-1,2-diol; all-trans-retinoic acid; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299188; zinc finger FYVE domain-containing protein 1; zinc finger, FYVE domain containing 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86108,916,062 - 108,965,231 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6108,916,062 - 108,965,160 (-)EnsemblGRCr8
mRatBN7.26103,184,938 - 103,234,111 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6103,184,938 - 103,234,039 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6103,346,651 - 103,395,756 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06103,645,865 - 103,694,962 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06103,015,337 - 103,064,435 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06107,031,411 - 107,080,590 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6107,031,412 - 107,080,524 (-)Ensemblrn6Rnor6.0
Rnor_5.06118,460,937 - 118,509,830 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46107,498,866 - 107,548,204 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6101,015,641 - 101,064,748 (-)NCBICelera
RGSC_v3.16107,503,540 - 107,551,702 (-)NCBI
Cytogenetic Map6q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11256955   PMID:11739631   PMID:11804589   PMID:19389623   PMID:19898463   PMID:22456507   PMID:23455425   PMID:24954904   PMID:25578879   PMID:25876663   PMID:30970241   PMID:31293035  


Genomics

Comparative Map Data
Zfyve1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86108,916,062 - 108,965,231 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6108,916,062 - 108,965,160 (-)EnsemblGRCr8
mRatBN7.26103,184,938 - 103,234,111 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6103,184,938 - 103,234,039 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6103,346,651 - 103,395,756 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06103,645,865 - 103,694,962 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06103,015,337 - 103,064,435 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06107,031,411 - 107,080,590 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6107,031,412 - 107,080,524 (-)Ensemblrn6Rnor6.0
Rnor_5.06118,460,937 - 118,509,830 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46107,498,866 - 107,548,204 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6101,015,641 - 101,064,748 (-)NCBICelera
RGSC_v3.16107,503,540 - 107,551,702 (-)NCBI
Cytogenetic Map6q31NCBI
ZFYVE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381472,969,445 - 73,027,106 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1472,969,451 - 73,027,131 (-)Ensemblhg38GRCh38
GRCh371473,436,153 - 73,493,814 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361472,505,912 - 72,563,592 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341472,505,911 - 72,523,417NCBI
Celera1453,499,299 - 53,557,223 (-)NCBICelera
Cytogenetic Map14q24.2NCBI
HuRef1453,602,230 - 53,659,971 (-)NCBIHuRef
CHM1_11473,374,318 - 73,431,997 (-)NCBICHM1_1
T2T-CHM13v2.01467,175,059 - 67,232,660 (-)NCBIT2T-CHM13v2.0
Zfyve1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391283,593,330 - 83,679,289 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1283,593,332 - 83,643,996 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381283,546,556 - 83,597,245 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1283,546,558 - 83,597,222 (-)Ensemblmm10GRCm38
MGSCv371284,887,891 - 84,938,097 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361284,436,673 - 84,484,642 (-)NCBIMGSCv36mm8
Celera1284,993,303 - 85,043,636 (-)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1238.76NCBI
Zfyve1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555232,334,175 - 2,388,612 (+)Ensembl
ChiLan1.0NW_0049555232,334,175 - 2,388,612 (+)NCBIChiLan1.0ChiLan1.0
ZFYVE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21574,081,251 - 74,138,942 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11473,297,764 - 73,355,455 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01453,550,688 - 53,608,297 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11472,414,810 - 72,471,578 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1472,414,810 - 72,471,578 (-)EnsemblpanPan2panpan1.1
ZFYVE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1846,353,489 - 46,407,912 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl846,353,761 - 46,406,038 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha846,033,682 - 46,088,098 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0846,575,384 - 46,629,813 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl846,575,394 - 46,629,785 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1846,243,456 - 46,297,884 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0846,259,416 - 46,313,970 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0846,650,744 - 46,705,414 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zfyve1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864029,704,511 - 29,764,447 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364882,304,438 - 2,364,709 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364882,304,521 - 2,364,472 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFYVE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl796,323,262 - 96,380,284 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1796,323,256 - 96,380,286 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27102,110,548 - 102,167,573 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFYVE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12450,219,429 - 50,276,783 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2450,220,867 - 50,273,900 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605338,397,013 - 38,456,640 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfyve1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473428,384,122 - 28,442,211 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473428,384,199 - 28,442,211 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Zfyve1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1797,645,074 - 97,695,394 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zfyve1
363 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:191
Count of miRNA genes:118
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000011662
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat

Markers in Region
D6Got139  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26103,210,322 - 103,210,596 (+)MAPPERmRatBN7.2
Rnor_6.06107,056,796 - 107,057,069NCBIRnor6.0
Rnor_5.06118,484,173 - 118,484,446UniSTSRnor5.0
RGSC_v3.46107,524,113 - 107,524,387RGDRGSC3.4
RGSC_v3.46107,524,114 - 107,524,387UniSTSRGSC3.4
Celera6101,041,022 - 101,041,295UniSTS
RGSC_v3.16107,527,569 - 107,527,843RGD
RH 3.4 Map6735.8UniSTS
RH 3.4 Map6735.8RGD
RH 2.0 Map6985.0RGD
Cytogenetic Map6q24UniSTS
RH143685  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26103,187,923 - 103,188,095 (+)MAPPERmRatBN7.2
Rnor_6.06107,034,398 - 107,034,569NCBIRnor6.0
Rnor_5.06118,506,673 - 118,506,844UniSTSRnor5.0
RGSC_v3.46107,501,852 - 107,502,023UniSTSRGSC3.4
Celera6101,018,627 - 101,018,798UniSTS
RH 3.4 Map6736.7UniSTS
Cytogenetic Map6q24UniSTS
BF398857  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26103,185,352 - 103,185,561 (+)MAPPERmRatBN7.2
Rnor_6.06107,031,827 - 107,032,035NCBIRnor6.0
Rnor_5.06118,509,207 - 118,509,415UniSTSRnor5.0
RGSC_v3.46107,499,281 - 107,499,489UniSTSRGSC3.4
Celera6101,016,056 - 101,016,264UniSTS
RH 3.4 Map6738.2UniSTS
Cytogenetic Map6q24UniSTS
AU049980  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26103,210,329 - 103,210,555 (+)MAPPERmRatBN7.2
Rnor_6.06107,056,803 - 107,057,028NCBIRnor6.0
Rnor_5.06118,484,214 - 118,484,439UniSTSRnor5.0
RGSC_v3.46107,524,121 - 107,524,346UniSTSRGSC3.4
Celera6101,041,029 - 101,041,254UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000011662   ⟹   ENSRNOP00000011662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6108,916,062 - 108,965,160 (-)Ensembl
mRatBN7.2 Ensembl6103,184,938 - 103,234,039 (-)Ensembl
Rnor_6.0 Ensembl6107,031,412 - 107,080,524 (-)Ensembl
RefSeq Acc Id: NM_001106743   ⟹   NP_001100213
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86108,916,062 - 108,965,160 (-)NCBI
mRatBN7.26103,184,938 - 103,234,039 (-)NCBI
Rnor_6.06107,031,412 - 107,080,524 (-)NCBI
Rnor_5.06118,460,937 - 118,509,830 (+)NCBI
RGSC_v3.46107,498,866 - 107,548,204 (-)RGD
Celera6101,015,641 - 101,064,748 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240323   ⟹   XP_006240385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86108,916,064 - 108,965,227 (-)NCBI
mRatBN7.26103,184,939 - 103,234,109 (-)NCBI
Rnor_6.06107,031,411 - 107,080,590 (-)NCBI
Rnor_5.06118,460,937 - 118,509,830 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112023   ⟹   XP_038967951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86108,916,064 - 108,965,223 (-)NCBI
mRatBN7.26103,184,939 - 103,234,111 (-)NCBI
RefSeq Acc Id: XM_039112024   ⟹   XP_038967952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86108,916,064 - 108,965,227 (-)NCBI
mRatBN7.26103,184,939 - 103,234,111 (-)NCBI
RefSeq Acc Id: XM_039112025   ⟹   XP_038967953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86108,916,064 - 108,965,218 (-)NCBI
mRatBN7.26103,184,939 - 103,234,111 (-)NCBI
RefSeq Acc Id: XM_063261729   ⟹   XP_063117799
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86108,916,064 - 108,965,231 (-)NCBI
RefSeq Acc Id: XM_063261730   ⟹   XP_063117800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86108,916,064 - 108,965,223 (-)NCBI
RefSeq Acc Id: XM_063261732   ⟹   XP_063117802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86108,916,064 - 108,947,254 (-)NCBI
RefSeq Acc Id: NP_001100213   ⟸   NM_001106743
- UniProtKB: D4A3T4 (UniProtKB/TrEMBL),   A6JDQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240385   ⟸   XM_006240323
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000011662   ⟸   ENSRNOT00000011662
RefSeq Acc Id: XP_038967953   ⟸   XM_039112025
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038967952   ⟸   XM_039112024
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038967951   ⟸   XM_039112023
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063117799   ⟸   XM_063261729
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063117800   ⟸   XM_063261730
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063117802   ⟸   XM_063261732
- Peptide Label: isoform X3
Protein Domains
FYVE-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3T4-F1-model_v2 AlphaFold D4A3T4 1-777 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694714
Promoter ID:EPDNEW_R5237
Type:multiple initiation site
Name:Zfyve1_1
Description:zinc finger FYVE-type containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06107,080,534 - 107,080,594EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307795 AgrOrtholog
BioCyc Gene G2FUF-36856 BioCyc
Ensembl Genes ENSRNOG00000008614 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011662 ENTREZGENE
  ENSRNOT00000011662.7 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro Growth_fac_rcpt_N_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  ZFYV1 UniProtKB/TrEMBL
  ZFYVE1_first_BBox1 UniProtKB/TrEMBL
  ZFYVE1_second_BBox1 UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:299188 UniProtKB/TrEMBL
NCBI Gene 299188 ENTREZGENE
PANTHER PTHR46624 UniProtKB/TrEMBL
  ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam ANCHR-like_BBOX UniProtKB/TrEMBL
  FYVE UniProtKB/TrEMBL
PhenoGen Zfyve1 PhenoGen
PROSITE ZF_FYVE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008614 RatGTEx
SMART FYVE UniProtKB/TrEMBL
Superfamily-SCOP FYVE_PHD_ZnF UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A6JDQ1 ENTREZGENE, UniProtKB/TrEMBL
  D4A3T4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-19 Zfyve1  zinc finger FYVE-type containing 1  Zfyve1  zinc finger, FYVE domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zfyve1  zinc finger, FYVE domain containing 1   Zfyve1_predicted  zinc finger, FYVE domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zfyve1_predicted  zinc finger, FYVE domain containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED