Zfp54 (zinc finger protein 54) - Rat Genome Database

Name: Zfp54
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Zfp54 (zinc finger protein 54) Rattus norvegicus

Analyze

No known orthologs.

Symbol:

Zfp54

Name:

zinc finger protein 54

RGD ID:

1307738

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC308232; Zfp51; zinc finger protein 51

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	69,864,213 - 69,876,881 (+)	NCBI		GRCr8
mRatBN7.2	1	61,190,806 - 61,205,841 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	61,136,700 - 61,203,995 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	65,954,674 - 65,966,956 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	74,637,365 - 74,649,643 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	67,864,713 - 67,876,995 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	61,286,077 - 61,338,888 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	61,314,070 - 61,326,280 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	63,764,847 - 63,803,750 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	59,370,984 - 59,383,096 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	59,373,930 - 59,385,075 (+)	NCBI
Celera	1	57,305,324 - 57,317,883 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Variants

Variants in Zfp54
98 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	35239598	78430678	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53895117	82174945	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	35239598	78430678	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	33449848	78449848	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
1357400	Bw62	Body weight QTL62	4.05		inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	1	22340647	67340647	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	45803140	78430678	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	28879780	78430678	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49361465	82174945	Rat
724520	Bp145	Blood pressure QTL 145	2.1	0.0024	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	20784828	65784828	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	34836858	79836858	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
738020	Pia8	Pristane induced arthritis QTL 8	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	1	65833076	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	33449848	78449848	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53895117	82174945	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000077642 ⟹ ENSRNOP00000072743

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	61,191,746 - 61,203,995 (+)	Ensembl
Rnor_6.0 Ensembl	1	61,314,070 - 61,326,280 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082730 ⟹ ENSRNOP00000072773

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	61,136,700 - 61,155,127 (+)	Ensembl

RefSeq Acc Id:

NM_001107467 ⟹ NP_001100937

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	69,864,628 - 69,876,881 (+)	NCBI
mRatBN7.2	1	61,191,746 - 61,203,999 (+)	NCBI
Rnor_6.0	1	61,314,070 - 61,326,284 (+)	NCBI
Rnor_5.0	1	63,764,847 - 63,803,750 (+)	NCBI
RGSC_v3.4	1	59,370,984 - 59,383,096 (+)	RGD
Celera	1	57,305,324 - 57,317,883 (+)	RGD

Sequence:

show sequence

AGGAACTGGACAAGGGTGAGGTGTTTCCTCTGCTACTCACAAAGATGACAGCTCTCAAATTCTG
CAGTACATGTCTTACCCTTGTCCATAAATTTAGAATATAGTTCACAAGCTGACTATTCACTGTT
CTTCAAAGAGAAGATCAAAGAAGAGAAACAGCAAGAAATGGCTGATTCTTCAGTCAACACGTCC
CAGTGTCTGTTGACATTCCGGGATGTGGCTGTGGACTTCTCCCAAGAGGAGTGGGAATGTCTGG
CCTCTCCTCAGAGGGCTTTGTACATTGATGTGATGTTGGAGAATTACAGCAACCTGGTCTCTGT
TGAGAACTACTGCATATGTGATACTGTCTGTCAACCTGTGAAGACTGAAAGGGAGTCCTGTCAG
TGTAATGAGCTTGGTAAAATGCTTCATGATCCCTCTCATGGTGGACTTTACAAAAGAAGTGACA
CCACAGAAACCTCTAATAACTACAGATGCTGTAAGGACAGGGATGTCTCTGTTGACTCATCAAA
CCCAGATCAACATAAAAGCACGCACACTGGGGAAGAACCTTGCACATCTGAAGACTGTGAGAAG
TCTTTCGATTTGTGTTCCAACATTACTCAAGATCAGACATTCTACACTGAAGAGAAAGAGCACA
GACAGGAAAAACATGATGACCATTTCAGCTCTACATACAGTCTCATGCAACAGTCAATCTACAT
TGGAGCAAATGCAGGCCAGTGTGTAAAATATGGGAAATGTTTCAGTATTGCTTCAAGCCTCAGT
ATACAGCAGAGAATTGATACTGGAAACAAACCCTACAAGTGCAATATTTGTGACAAATCTTTTA
CTCAGTGCTCAAGTCTTAAAACACATCGTAAAACACATCAAAGACTTCGTGCTGGGACAAAACC
TTACAAATGCAGTGACTGTGAAAAGTCTTTCTCTTATTTATCTGCACTTAAAAGTCATCAGAAA
AGGCATACTGGAGAGAAGAGGTACAAGTGTAAGGAATGTGACAAATCCTATGCCTACCGTACTG
GTTTGAAGAGACATCAGAAAATCCATACTGCAAAGGAACGTTATAGTTGTCAACACTGTGGCAA
GGTCTTTCATCAGCTCTCACACTTCAAAAGCCATTTCACAGTCCATTCTGCAGAGAAGCCTTAC
AAATGCAATGAGTGCCACAGATCCTTTCCCCATTATGTATTCTTCAGAAGGCATAAGAAAAATC
ATTCTCTACAGAAATCTCACAAATGCAAAGAATGTGGTAAGTCCTTTTTTATATTGTCACATCT
TAAAACTCATTACAGAATCCATACTGGTGAGAAGCCTTACAAATGTACAGAATGTGACAAATCC
TTTACCCAGTACTCACATCTTCGAAGACATCAGAGAATTTATACTGGAAAGAAACTTTACAGAT
GTGAGGTATGTGACAAATGGTTTACTATGTCCTCAAGTCTCAGCAGACATCAGAAAATTCACAC
TGAAGCAAAAACTTATAAATGCAAGGACTGTGACATATTCTTTACCCACTACTCAAGTCTTAGA
AGACATCAGAGGGTTCATACTGGAGAAAAACATACATGTAAACAGTGTGGCAAATCTTTTACTA
GGGGCTCAACTCTTAGAGCACATCAGAGAATTCATACTGGAGAGAAACCTTACAAATGTAGTAA
ATGTGACAAATCCTTTATCCAGGCCTCACAACTTAGAACACATCAGAGAGTTCATACTGGAGAG
AGACCTTATGTATGTAAGGAATGTGGCAAATCACTTACTACATGTGCAATTCTTAGAGCACATC
AGAAAATTCATACTGGAGAGAAACCTTACAAATGTATGGAATGTGGCAAATCCTATATTCAGTA
CTCACATCTTAAAAGACATCAGAAAGTTCATACTGGAGAGAAACATACAATTGTAAATAATGTG
ACATAGCATTCATCTATTATTCTCTCTCTGTTCAAATCCTAACATTATACATAATAGAAATGTA
AGCATGAGAAACATGGGAAAGGCTTTAAAGTCTTAGAATGTTTCACAAAGTTTGTCAAAATAAA
AATTTCCAAATGTAATTATGTGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039110828 ⟹ XP_038966756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	69,864,213 - 69,876,870 (+)	NCBI
mRatBN7.2	1	61,190,806 - 61,205,841 (+)	NCBI

RefSeq Acc Id:

XM_039110833 ⟹ XP_038966761

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	69,864,463 - 69,876,870 (+)	NCBI
mRatBN7.2	1	61,191,679 - 61,205,841 (+)	NCBI

RefSeq Acc Id:

XM_063288591 ⟹ XP_063144661

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	69,864,615 - 69,876,870 (+)	NCBI

RefSeq Acc Id:

XM_063288594 ⟹ XP_063144664

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	69,864,555 - 69,876,870 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100937	(Get FASTA)	NCBI Sequence Viewer
	XP_038966756	(Get FASTA)	NCBI Sequence Viewer
	XP_038966761	(Get FASTA)	NCBI Sequence Viewer
	XP_063144661	(Get FASTA)	NCBI Sequence Viewer
	XP_063144664	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68865	(Get FASTA)	NCBI Sequence Viewer
	EDL99773	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072743.1
	ENSRNOP00000072773.2

RefSeq Acc Id:

NP_001100937 ⟸ NM_001107467

- UniProtKB:

B5DEZ5 (UniProtKB/TrEMBL), A0A0G2K3R3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MADSSVNTSQCLLTFRDVAVDFSQEEWECLASPQRALYIDVMLENYSNLVSVENYCICDTVCQP
VKTERESCQCNELGKMLHDPSHGGLYKRSDTTETSNNYRCCKDRDVSVDSSNPDQHKSTHTGEE
PCTSEDCEKSFDLCSNITQDQTFYTEEKEHRQEKHDDHFSSTYSLMQQSIYIGANAGQCVKYGK
CFSIASSLSIQQRIDTGNKPYKCNICDKSFTQCSSLKTHRKTHQRLRAGTKPYKCSDCEKSFSY
LSALKSHQKRHTGEKRYKCKECDKSYAYRTGLKRHQKIHTAKERYSCQHCGKVFHQLSHFKSHF
TVHSAEKPYKCNECHRSFPHYVFFRRHKKNHSLQKSHKCKECGKSFFILSHLKTHYRIHTGEKP
YKCTECDKSFTQYSHLRRHQRIYTGKKLYRCEVCDKWFTMSSSLSRHQKIHTEAKTYKCKDCDI
FFTHYSSLRRHQRVHTGEKHTCKQCGKSFTRGSTLRAHQRIHTGEKPYKCSKCDKSFIQASQLR
THQRVHTGERPYVCKECGKSLTTCAILRAHQKIHTGEKPYKCMECGKSYIQYSHLKRHQKVHTG
EKHTIVNNVT

hide sequence

Ensembl Acc Id:

ENSRNOP00000072743 ⟸ ENSRNOT00000077642

RefSeq Acc Id:	XP_038966756 ⟸ XM_039110828
- Peptide Label:	isoform X1
- UniProtKB:	B5DEZ5 (UniProtKB/TrEMBL), A0A0G2K3R3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966761 ⟸ XM_039110833
- Peptide Label:	isoform X1
- UniProtKB:	B5DEZ5 (UniProtKB/TrEMBL), A0A0G2K3R3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000072773 ⟸ ENSRNOT00000082730

RefSeq Acc Id:	XP_063144664 ⟸ XM_063288594
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K3R3 (UniProtKB/TrEMBL), B5DEZ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144661 ⟸ XM_063288591
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K3R3 (UniProtKB/TrEMBL), B5DEZ5 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DEZ5-F1-model_v2	AlphaFold	B5DEZ5	1-586	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689653

Promoter ID:

EPDNEW_R177

Type:

single initiation site

Name:

Zfp54_1

Description:

zinc finger protein 54

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	61,314,038 - 61,314,098	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307738	AgrOrtholog
BioCyc Gene	G2FUF-61174	BioCyc
Ensembl Genes	ENSRNOG00000051578	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077642.2	UniProtKB/TrEMBL
	ENSRNOT00000082730.2	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Ikaros_C2H2-ZF	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:308232	UniProtKB/TrEMBL
NCBI Gene	308232	ENTREZGENE
PANTHER	FI01424P-RELATED	UniProtKB/TrEMBL
	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 853	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_4	UniProtKB/TrEMBL
	zf-C2H2_6	UniProtKB/TrEMBL
PhenoGen	Zfp54	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000051578	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2K3R3	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K3T8_RAT	UniProtKB/TrEMBL
	B5DEZ5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-11-27	Zfp54	zinc finger protein 54	Zfp51	zinc finger protein 51	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-03	Zfp51	zinc finger protein 51	Zfp54_predicted	zinc finger protein 54 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Zfp54_predicted	zinc finger protein 54 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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