Mlec (malectin) - Rat Genome Database

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Gene: Mlec (malectin) Rattus norvegicus
Analyze
Symbol: Mlec
Name: malectin
RGD ID: 1307736
Description: Predicted to enable carbohydrate binding activity; enzyme binding activity; and protein-folding chaperone binding activity. Predicted to be located in endoplasmic reticulum. Predicted to be part of oligosaccharyltransferase complex. Predicted to be active in membrane. Orthologous to human MLEC (malectin); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC304543; MGC108831; RGD1307736; similar to Hypothetical protein KIAA0152
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81247,118,918 - 47,133,598 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1247,118,855 - 47,130,064 (+)EnsemblGRCr8
mRatBN7.21241,458,234 - 41,468,710 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,458,231 - 41,468,708 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1242,625,752 - 42,636,202 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,239,406 - 43,249,859 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01242,299,973 - 42,310,424 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1248,385,739 - 48,396,195 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1248,309,893 - 48,320,369 (+)NCBILyon_Normotensive
Lyon_Hypertensive1247,174,829 - 47,185,287 (+)NCBILyon_Hypertensive
F344_StmMcwi1257,634,284 - 57,644,760 (+)NCBIF344_StmMcwi
Rnor_6.01247,219,071 - 47,233,769 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,218,969 - 47,252,286 (+)Ensemblrn6Rnor6.0
Rnor_5.01249,014,186 - 49,024,662 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41242,729,870 - 42,740,346 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1243,076,917 - 43,087,411 (+)NCBICelera
RGSC_v3.11242,593,257 - 42,603,733 (+)NCBI
Cytogenetic Map12q16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
allethrin  (EXP)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
cyproconazole  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diuron  (ISO)
elemental selenium  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
finasteride  (EXP)
flutamide  (EXP)
furan  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (ISO)
indometacin  (ISO)
inulin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
methyl methanesulfonate  (ISO)
miconazole  (ISO)
mitomycin C  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
nitrates  (ISO)
Nutlin-3  (ISO)
paclitaxel  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
propiconazole  (ISO)
pyrethrins  (EXP)
rac-lactic acid  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP,ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:19946888   PMID:22988243   PMID:25002582  


Genomics

Comparative Map Data
Mlec
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81247,118,918 - 47,133,598 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1247,118,855 - 47,130,064 (+)EnsemblGRCr8
mRatBN7.21241,458,234 - 41,468,710 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,458,231 - 41,468,708 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1242,625,752 - 42,636,202 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,239,406 - 43,249,859 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01242,299,973 - 42,310,424 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1248,385,739 - 48,396,195 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1248,309,893 - 48,320,369 (+)NCBILyon_Normotensive
Lyon_Hypertensive1247,174,829 - 47,185,287 (+)NCBILyon_Hypertensive
F344_StmMcwi1257,634,284 - 57,644,760 (+)NCBIF344_StmMcwi
Rnor_6.01247,219,071 - 47,233,769 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,218,969 - 47,252,286 (+)Ensemblrn6Rnor6.0
Rnor_5.01249,014,186 - 49,024,662 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41242,729,870 - 42,740,346 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1243,076,917 - 43,087,411 (+)NCBICelera
RGSC_v3.11242,593,257 - 42,603,733 (+)NCBI
Cytogenetic Map12q16NCBI
MLEC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812120,687,149 - 120,701,859 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12120,687,125 - 120,704,282 (+)Ensemblhg38GRCh38
GRCh3712121,124,952 - 121,139,662 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612119,609,332 - 119,624,050 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3412119,587,668 - 119,602,387NCBI
Celera12120,759,216 - 120,773,932 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12118,134,230 - 118,148,946 (+)NCBIHuRef
CHM1_112121,093,737 - 121,108,453 (+)NCBICHM1_1
T2T-CHM13v2.012120,676,305 - 120,691,013 (+)NCBIT2T-CHM13v2.0
Mlec
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,281,040 - 115,296,235 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,281,040 - 115,296,238 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385115,142,981 - 115,158,176 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,142,981 - 115,158,179 (-)Ensemblmm10GRCm38
MGSCv375115,592,990 - 115,608,185 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365115,406,090 - 115,419,145 (-)NCBIMGSCv36mm8
Celera5112,239,386 - 112,254,583 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.99NCBI
Mlec
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545510,974,968 - 10,983,965 (-)Ensembl
ChiLan1.0NW_00495545510,969,859 - 10,983,977 (-)NCBIChiLan1.0ChiLan1.0
MLEC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210128,756,840 - 128,772,048 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112128,753,637 - 128,768,421 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012118,270,574 - 118,285,314 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112121,643,823 - 121,658,825 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12121,644,247 - 121,653,514 (+)EnsemblpanPan2panpan1.1
MLEC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12616,536,545 - 16,551,891 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2616,537,016 - 16,546,514 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2616,539,273 - 16,553,193 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02616,802,656 - 16,816,591 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2616,802,901 - 16,816,540 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12616,763,251 - 16,777,154 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,838,978 - 16,854,245 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,881,299 - 16,895,214 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mlec
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118145,797,684 - 145,812,544 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668301,710 - 311,713 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936668293,997 - 311,441 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MLEC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,601,990 - 40,617,295 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11440,601,982 - 40,617,382 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21443,069,346 - 43,084,744 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MLEC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111116,043,591 - 116,058,578 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11116,043,522 - 116,053,342 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037129,038,771 - 129,054,067 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mlec
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,000,403 - 13,009,818 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474712,995,246 - 13,009,827 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Mlec
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11638,669,500 - 38,681,018 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:225
Count of miRNA genes:168
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000038395
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123776414551558799Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)124413955852308831Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 12 61 132 57 60 41 86 41 298 168 11 123 71 73 19 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000038395   ⟹   ENSRNOP00000035497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1247,118,869 - 47,129,393 (+)Ensembl
mRatBN7.2 Ensembl1241,458,231 - 41,468,708 (+)Ensembl
Rnor_6.0 Ensembl1247,219,089 - 47,229,564 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077871   ⟹   ENSRNOP00000072503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1241,478,808 - 41,491,432 (+)Ensembl
Rnor_6.0 Ensembl1247,239,663 - 47,252,286 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081343   ⟹   ENSRNOP00000071670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1247,218,969 - 47,244,005 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000149206   ⟹   ENSRNOP00000108117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1247,118,855 - 47,130,064 (+)Ensembl
RefSeq Acc Id: NM_001013983   ⟹   NP_001014005
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81247,118,918 - 47,129,394 (+)NCBI
mRatBN7.21241,458,234 - 41,468,710 (+)NCBI
Dahl_SR_JrHsd1248,385,739 - 48,396,195 (+)NCBI
Lyon_Normotensive1248,309,893 - 48,320,369 (+)NCBI
Lyon_Hypertensive1247,174,829 - 47,185,287 (+)NCBI
F344_StmMcwi1257,634,284 - 57,644,760 (+)NCBI
Rnor_6.01247,219,089 - 47,229,565 (+)NCBI
Rnor_5.01249,014,186 - 49,024,662 (+)NCBI
RGSC_v3.41242,729,870 - 42,740,346 (+)RGD
Celera1243,076,917 - 43,087,411 (+)RGD
Sequence:
RefSeq Acc Id: XM_063271352   ⟹   XP_063127422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81247,118,991 - 47,133,598 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001014005 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127422 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89839 (Get FASTA)   NCBI Sequence Viewer  
  EDM13905 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000035497
  ENSRNOP00000035497.4
GenBank Protein Q5FVQ4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001014005   ⟸   NM_001013983
- Peptide Label: precursor
- UniProtKB: Q5FVQ4 (UniProtKB/Swiss-Prot),   A6J1W6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000035497   ⟸   ENSRNOT00000038395
Ensembl Acc Id: ENSRNOP00000072503   ⟸   ENSRNOT00000077871
Ensembl Acc Id: ENSRNOP00000071670   ⟸   ENSRNOT00000081343
RefSeq Acc Id: XP_063127422   ⟸   XM_063271352
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000108117   ⟸   ENSRNOT00000149206
Protein Domains
Malectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVQ4-F1-model_v2 AlphaFold Q5FVQ4 1-291 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698701
Promoter ID:EPDNEW_R9224
Type:initiation region
Name:Mlec_2
Description:malectin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9225  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01247,219,074 - 47,219,134EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307736 AgrOrtholog
BioCyc Gene G2FUF-18974 BioCyc
Ensembl Genes ENSRNOG00000021725 Ensembl
  ENSRNOG00000064601 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000038395 ENTREZGENE
  ENSRNOT00000038395.5 UniProtKB/Swiss-Prot
Gene3D-CATH Galactose-binding lectin UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7365814 IMAGE-MGC_LOAD
InterPro Malectin_dom UniProtKB/Swiss-Prot
  MLEC UniProtKB/Swiss-Prot
KEGG Report rno:304543 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108831 IMAGE-MGC_LOAD
NCBI Gene 304543 ENTREZGENE
PANTHER MALECTIN UniProtKB/Swiss-Prot
  PTHR13460 UniProtKB/Swiss-Prot
Pfam Malectin UniProtKB/Swiss-Prot
PhenoGen Mlec PhenoGen
RatGTEx ENSRNOG00000021725 RatGTEx
  ENSRNOG00000064601 RatGTEx
UniProt A0ABK0LSL2_RAT UniProtKB/TrEMBL
  A6J1W6 ENTREZGENE, UniProtKB/TrEMBL
  MLEC_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-12 Mlec  malectin  RGD1307736  similar to Hypothetical protein KIAA0152  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1307736  similar to Hypothetical protein KIAA0152  RGD1307736_predicted  similar to Hypothetical protein KIAA0152 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307736_predicted  similar to Hypothetical protein KIAA0152 (predicted)  LOC304543_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC304543_predicted  similar to Hypothetical protein KIAA0152 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL