Advanced Search (OLGA)

Gene: Ankrd55 (ankyrin repeat domain 55) Rattus norvegicus

Analyze

Symbol:

Ankrd55

Name:

ankyrin repeat domain 55

RGD ID:

1307735

Description:

Orthologous to human ANKRD55 (ankyrin repeat domain 55); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ankyrin repeat domain-containing protein 55; LOC361898; RGD1307735; similar to hypothetical protein FLJ11795

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ANKRD55 (ankyrin repeat domain 55)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Ankrd55 (ankyrin repeat domain 55)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ankrd55 (ankyrin repeat domain 55)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ANKRD55 (ankyrin repeat domain 55)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ANKRD55 (ankyrin repeat domain 55)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ankrd55 (ankyrin repeat domain 55)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ANKRD55 (ankyrin repeat domain 55)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ANKRD55 (ankyrin repeat domain 55)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ankrd55 (ankyrin repeat domain 55)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ankrd55 (ankyrin repeat domain 55)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	VCL (vinculin)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Ankrd55 (ankyrin repeat domain 55)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ANKRD55 (ankyrin repeat domain 55)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ankrd55 (ankyrin repeat domain 55)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ankrd55 (ankyrin repeat domain 55)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ankrd55	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ankrd55	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	45,617,011 - 45,717,086 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	45,617,177 - 45,717,057 (+)	Ensembl				GRCr8
mRatBN7.2	2	43,883,877 - 43,983,820 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	43,883,857 - 43,983,680 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	51,033,156 - 51,102,153 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	49,091,588 - 49,160,593 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	43,950,475 - 44,019,321 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	43,819,234 - 44,196,602 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	44,096,061 - 44,196,605 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	63,138,915 - 63,238,523 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	43,547,129 - 43,701,247 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	39,694,370 - 39,763,567 (+)	NCBI		Celera
RGSC_v3.1	2	43,496,274 - 43,629,032 (+)	NCBI
Cytogenetic Map	2	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chloracne (ISO)

rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

decabromodiphenyl ether (EXP)

dichloroacetic acid (ISO)

entinostat (ISO)

fulvestrant (ISO)

genistein (ISO)

malathion (ISO)

methimazole (EXP)

paracetamol (EXP)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

potassium dichromate (ISO)

progesterone (ISO)

propanal (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tetrachloroethene (ISO)

trichloroethene (EXP)

triptonide (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

venlafaxine hydrochloride (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22993404

Genomics

Comparative Map Data

Ankrd55
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	45,617,011 - 45,717,086 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	45,617,177 - 45,717,057 (+)	Ensembl				GRCr8
mRatBN7.2	2	43,883,877 - 43,983,820 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	43,883,857 - 43,983,680 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	51,033,156 - 51,102,153 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	49,091,588 - 49,160,593 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	43,950,475 - 44,019,321 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	43,819,234 - 44,196,602 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	44,096,061 - 44,196,605 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	63,138,915 - 63,238,523 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	43,547,129 - 43,701,247 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	39,694,370 - 39,763,567 (+)	NCBI		Celera
RGSC_v3.1	2	43,496,274 - 43,629,032 (+)	NCBI
Cytogenetic Map	2	q14	NCBI

ANKRD55
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	56,099,680 - 56,233,330 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	56,099,680 - 56,233,330 (-)	Ensembl			hg38	GRCh38
GRCh37	5	55,395,507 - 55,529,157 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	55,431,264 - 55,564,943 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	52,349,365 - 52,481,877 (-)	NCBI		Celera
Cytogenetic Map	5	q11.2	NCBI
HuRef	5	52,368,615 - 52,500,324 (-)	NCBI		HuRef
CHM1_1	5	55,399,413 - 55,532,167 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	56,928,078 - 57,060,891 (-)	NCBI		T2T-CHM13v2.0

Ankrd55
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	112,424,985 - 112,523,391 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	112,424,985 - 112,520,536 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	112,288,451 - 112,384,005 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	112,288,451 - 112,384,002 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	113,078,659 - 113,174,210 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	113,409,698 - 113,504,880 (+)	NCBI		MGSCv36	mm8
Celera	13	116,592,668 - 116,688,706 (+)	NCBI		Celera
Cytogenetic Map	13	D2.2	NCBI
cM Map	13	63.73	NCBI

Ankrd55
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	11,622,124 - 11,714,069 (+)	Ensembl
ChiLan1.0	NW_004955446	11,622,317 - 11,713,690 (+)	NCBI	ChiLan1.0	ChiLan1.0

ANKRD55
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	57,699,636 - 57,833,645 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	55,853,265 - 55,988,808 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	57,788,013 - 57,923,070 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	59,416,713 - 59,550,255 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	59,416,641 - 59,550,255 (+)	Ensembl			panPan2	panpan1.1

ANKRD55
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	43,338,042 - 43,655,708 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	43,339,179 - 43,488,840 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	40,384,457 - 40,499,351 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	43,804,012 - 43,918,929 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	43,805,170 - 43,888,863 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	40,882,098 - 40,996,870 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	41,684,715 - 41,799,851 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	42,504,803 - 42,620,129 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ankrd55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	202,735,419 - 202,832,758 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	11,671,842 - 11,769,228 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	11,672,300 - 11,769,183 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANKRD55
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	35,231,673 - 35,330,790 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	35,231,670 - 35,662,787 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	37,296,712 - 37,396,264 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANKRD55
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	52,334,397 - 52,466,161 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	52,334,914 - 52,421,715 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666049	1,211,755 - 1,342,910 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ankrd55
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	3,064,404 - 3,165,145 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624759	3,064,567 - 3,165,069 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ankrd55
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	184,674,538 - 184,772,644 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ankrd55
635 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	244
Count of miRNA genes:	150
Interacting mature miRNAs:	173
Transcripts:	ENSRNOT00000018438
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1300160	Hrtrt3	Heart rate QTL 3	3.62		heart pumping trait (VT:2000009)	absolute change in heart rate (CMO:0000534)	2	35614083	53462005	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9685065	Swd6	Spike wave discharge measurement QTL 6	5.8	0.01	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge rate (CMO:0001739)	2	40957423	50526673	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	41801363	104744824	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
631208	Bw1	Body weight QTL1	5.09		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	2	44904355	85286097	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	44537979	112567334	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	38426449	111295694	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	44904355	89904355	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Markers in Region

D2Rat254

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	45,640,933 - 45,641,185 (+)	Marker Load Pipeline
mRatBN7.2	2	43,907,655 - 43,907,909 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	44,119,841 - 44,120,092	NCBI	Rnor6.0
Rnor_5.0	2	63,162,628 - 63,162,879	UniSTS	Rnor5.0
RGSC_v3.4	2	43,624,816 - 43,625,065	RGD	RGSC3.4
RGSC_v3.4	2	43,624,817 - 43,625,068	UniSTS	RGSC3.4
Celera	2	39,687,381 - 39,687,622	UniSTS
RGSC_v3.1	2	43,553,049 - 43,553,298	RGD
FHH x ACI Map	2	26.2999	UniSTS
FHH x ACI Map	2	26.2999	RGD
Cytogenetic Map	2	q14	UniSTS

D2Rat267

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	45,621,980 - 45,622,103 (+)	Marker Load Pipeline
mRatBN7.2	2	43,888,701 - 43,888,824 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	44,100,597 - 44,100,719	NCBI	Rnor6.0
Rnor_5.0	2	63,143,384 - 63,143,506	UniSTS	Rnor5.0
RGSC_v3.4	2	43,605,866 - 43,605,989	RGD	RGSC3.4
RGSC_v3.4	2	43,605,867 - 43,605,989	UniSTS	RGSC3.4
Celera	2	39,668,413 - 39,668,535	UniSTS
RGSC_v3.1	2	43,534,099 - 43,534,222	RGD
SHRSP x BN Map	2	18.4498	UniSTS
SHRSP x BN Map	2	18.4498	RGD
Cytogenetic Map	2	q14	UniSTS

RH131645

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	43,983,468 - 43,983,688 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	44,196,256 - 44,196,475	NCBI	Rnor6.0
Rnor_5.0	2	63,238,177 - 63,238,396	UniSTS	Rnor5.0
RGSC_v3.4	2	43,700,901 - 43,701,120	UniSTS	RGSC3.4
Celera	2	39,763,356 - 39,763,575	UniSTS
RH 3.4 Map	2	278.5	UniSTS
Cytogenetic Map	2	q14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	12	67	165	91	90	59	41	59	6	285	141	11	144	62	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001270039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005500312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JQ013731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018438 ⟹ ENSRNOP00000018438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	45,617,177 - 45,717,057 (+)	Ensembl
mRatBN7.2 Ensembl	2	43,883,857 - 43,983,680 (+)	Ensembl
Rnor_6.0 Ensembl	2	44,096,061 - 44,196,605 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098621 ⟹ ENSRNOP00000095577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	45,639,334 - 45,717,057 (+)	Ensembl
mRatBN7.2 Ensembl	2	43,914,510 - 43,983,680 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000122008 ⟹ ENSRNOP00000105149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	45,617,177 - 45,717,057 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000122996 ⟹ ENSRNOP00000104127

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	45,617,411 - 45,717,057 (+)	Ensembl

RefSeq Acc Id:

NM_001270039 ⟹ NP_001256968

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,647,786 - 45,716,951 (+)	NCBI
mRatBN7.2	2	43,914,510 - 43,983,680 (+)	NCBI
Rnor_6.0	2	44,126,818 - 44,196,467 (+)	NCBI
Rnor_5.0	2	63,138,915 - 63,238,523 (+)	NCBI
Celera	2	39,694,370 - 39,763,567 (+)	NCBI

Sequence:

show sequence

ACTTACAGTTGGACAGCAGTGGTGGGCAGGTTGTGAGGGGGCCACGTGAGAGCTAGTTCTGCAT
AGGGAAAGCTCCTGGTAGGAAGGAGGCAGCTACTGCTAGATGCTCAGCAAGGGAGGAGAGCCCC
ATCTTCTCCCTTCCCAGTCTCCAGGGCCTCCCATGTGAAGCAACAGGATAAGGGCATCTGGAGA
TAGATAGTGAGCTAAGATCAAGGTACGAACATCTTTGGAAGAGAGAGAGGAATGACCATAATGC
TTCTCCCAAAGATGGACAAAGTGAGGTACTAAGAAGACCGGTAATATGTCCATGGATGTAGTTC
AGTTGGTAGAGGGCTTACCTAGAGAGCACATGTTTTCAATTTCCAACAATTGCACAAAACCAGG
CATAGCAGCCCACGTCTGCAAATGCCAACTCTCAGGGGTGGGTGTAAGAGAATCAGAAATCCAA
GGTCAGCCTCAGCTACATAGAAAATTAAGGCCAACCTGGGCTACACAGGACCGTGGCTCTAAAC
AGAAACAAACAAAAGAGAAAACATAGTATGCTTCAGATCTTGAAGAATAGATTGAAATGAAGAA
GATGGCCCTCTTCCCTTACTGGTCTCTCTGATTTTGGGAAACCTCAATGCCTAAAGAGTCATAA
CACGTCAATCCCAAGGCTCCTTGCCAACATGTGGTAGTGTGCGAATGACCTAGAGTGGCCCACT
TTTCTTCAGAAGTGTCCCTTCAGAAGAGAGTATATGACTAAGCTGACCCCGCCTCTGCCTGGAT
TCACTGGAGAGGAAGGTTTAGTGACTCACTTGTGTGGGTGACAATCTGGTCTGTGGTATCCTTT
GAGTGAACTCACTTTGCACACTAACAGAGTATCTGGTTTGTGTAGGTGACTCATCTGAAGAAGT
CGACCTGACAATGGTGTATCAGGCAGCATCGAATGGAGATGTCAACTCTCTGACTGCCGTGATC
CGGGAGGATCCGTCCATCCTAGAATGTTGTGACAGTGAAGGATGTACGCCCTTGATGCATGCAG
TTTCGGGACGTCAAGTGGACACAGTGAAGCTGCTGCTAAAGATGGGCGCCAACATTAATACACA
GGATGCATACGGTCGCACCAGTTTATGCCTGGCAACCTACCTGGGCTGGCTTGAAGGCTGTGTG
AGTCTGCTCAGAAATGGTGCCAAGCACAACATCCCAGATAAAAATGGCCGCCTGCCACTGCACG
CTGCCACTGCTGAACCTGATGTGAGGCTTCTCATCGTCCTGCTGCAGCAGTCTAGCCTCAGTGA
GATCAACCATCAGGACACAGAGGGAATGACACCACTTCATTGGGCAGCTTTTCACAACCGGCCT
CAACATACCCAGATGCTGTTGAAGAAGGGGGCAGACCCCACCCTTGTGGACAAGGACTTTAAAA
CAGCTCTCCACTGGGCTGTCCAGAGCGGAAATCGAATTCTGTGCTCCATCATTCTGAGCCATCG
TCAGGGCCCATCCATTATCAACTACGACGACGAGAGTGGGAAGACGTGTGTCCATATCGCAGCT
GCTTCCGGTTTCGGCGACATCATTCACGATCTGGCCAAGGTCCCCGAGTGTAACCTGCAGGCTC
TGGATGTGGATGACAGGACACCCCTGCACTGGGCTGCAGCTGCTGGAAAGGCAGAATGCGTCCA
GTCACTGCTGGACTTGGGCATGGACAGCAACCTGAGGGACATTAATGAGAGCACGCCCCTGGCC
TACGCCTTGTACTGTGGTCACACAGCCTGCGTCAGGCTCCTTTCCCGAGAGGGCCGAGCAGAGC
CTGCTAGGTCTCTCCCCTCTCAGAACAGTCAACCCCAAAAGAAGGAAGGACGATTCAGCGTGCT
CAACCAAATCTTCTGCAAAAACAAGAAAGAGGAGCAGAAAGCCCATCAGAAGGAGCAGAGCAGG
GCCAGACCTAAGGAGGAGGACACCTCGGAAGTCAATGACATCATCGCCACCTTTGACAGCGTCG
TGGATACCAACTGCCAAGATCAGCCTGGTGACCAGGTGGACATGGTTGTCTTTAAGAAGAGGAC
CTCAGAGAATTCAAAGTATCTCTTGCCAGAAAAGAAATCCCTGGCCCGGAAGGGGCTTCCACCA
ATCAGAACACAGAGTCTCCCACCCATCACCCTGGGCAGTAACTTCCTGACAGCCTCCCATGGAG
CCACGTCCCACGCTGGTCTGAACTCTGGTCTTCAGCATACTGCCCAGCGTTCTCAGAAAAGCCG
AAGCGAACAGGACCTGTTGAATAATAGGACTGGCTGCCAGGTGTCACTAGATAATCCCTGGAAG
GGTGACACTAGGCAGGCATTCTCCTGCAAGGCTTGGACTGTGTCTTCCTCTGATAAGTTACTAG
ACAGGATGTTCACTGGCCAGCCTGGTCACCAGGAGCTGTCTGGGCCACCACATCTTCCTCATCT
ACCTAATCCCTCACCAGGGCAAGGTCTACAGCATCTCTCCCCAAACAGACCTAAAGTCAGAGAC
TTCCCCTTTACTCGGAACAGCCTGGCACCTCTGCCGGACCAAAAATTTCTATCTGGAGAACCCC
TGAGAACGAACCGGGTGCTTCCAGCGATTCCAAGCCAGAGGGGACATGACCCACCAGCTGAAGA
GAGCGAGTGGTCCTCCAGTCCCACCCATGATGAAAACTGACTGCAGGTTGCTCTGTGGAAATAT
AGAAGACTTTAATTTTTCAACTTTCCAAGGGTGAGATTACTCTAGTTTATATGAGCAAAGTCTT
AATTTTAGTAAGCTGCGTTCTACAAGCCACTTACGGTTTTATAATTCAAGGTTCCTCATTTCAA
ATAAATACACTTCCTAAATACTCACTTAGAATCTCCAGGTGTGCAAACATCACCCAGTCTATGA
GTTTCTGTGGACCCCCGCCCTCAACACACTGTAATTCAGAAACAAAATACACACCTGAAAGGAA
GGTTTAGGTACGTTTCATTTATGTTTGTGCCAT

hide sequence

RefSeq Acc Id:

XM_006231940 ⟹ XP_006232002

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,617,099 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,883,898 - 43,983,820 (+)	NCBI
Rnor_6.0	2	44,096,059 - 44,196,602 (+)	NCBI
Rnor_5.0	2	63,138,915 - 63,238,523 (+)	NCBI

Sequence:

show sequence

GAGGTGGCCCGTCTCTGCTCACATGACCCAAATGCAGTTCTCACTCCACCAAGAACAAACAGCC
CCGTACGCAGTCTGCGCTGGCAGCTTTGCACATGCTCCGTCTGGCCCTGTGAATCTCACTCACT
CATTGAGATTTCTATTGGTTTAAAGCGACCTTCCAGCCGCCGCCGCCGAAGCTCTGGGATCTGC
AGCATTTTCTTGGCCCAGATCCAAGGCAGGCACCCCACGAAGGCTGTCTTATTTTAGGGCTGTC
TTATTTCATCAACATTTGGGATGTTTCGTCTGTCTGTTTGAGGGAAGAGTGTATATAATATTCA
CACATGAGTATAGATGATGAATGGGGCTCTGAGAGTAAGTCTTCCTCCCCTGCAGTTTTTATAG
GAAGAGTGTTTTGATGTCTTTTCAACGGTGGCCTTGAAGGCAGTCCGCAGGTCTAAGGCACGCT
TGATTCTACCACGGGAGCGTCAGCCAACGATGCTGAAGCTGACTGACTGCAGTGTGTGAAATGG
TGTTTCCTCCTCTCCAGAGTCCTGAATGTTGCCGTTCGGATGGTAAATGATGAGGCAGGCTACC
ATGGATTTCAGCAGCTCGTCTGTGTTTGATCAGCACAAAGGTGACTCATCTGAAGAAGTCGACC
TGACAATGGTGTATCAGGCAGCATCGAATGGAGATGTCAACTCTCTGACTGCCGTGATCCGGGA
GGATCCGTCCATCCTAGAATGTTGTGACAGTGAAGGATGTACGCCCTTGATGCATGCAGTTTCG
GGACGTCAAGTGGACACAGTGAAGCTGCTGCTAAAGATGGGCGCCAACATTAATACACAGGATG
CATACGGTCGCACCAGTTTATGCCTGGCAACCTACCTGGGCTGGCTTGAAGGCTGTGTGAGTCT
GCTCAGAAATGGTGCCAAGCACAACATCCCAGATAAAAATGGCCGCCTGCCACTGCACGCTGCC
ACTGCTGAACCTGATGTGAGGCTTCTCATCGTCCTGCTGCAGCAGTCTAGCCTCAGTGAGATCA
ACCATCAGGACACAGAGGGAATGACACCACTTCATTGGGCAGCTTTTCACAACCGGCCTCAACA
TACCCAGATGCTGTTGAAGAAGGGGGCAGACCCCACCCTTGTGGACAAGGACTTTAAAACAGCT
CTCCACTGGGCTGTCCAGAGCGGAAATCGAATTCTGTGCTCCATCATTCTGAGCCATCGTCAGG
GCCCATCCATTATCAACTACGACGACGAGAGTGGGAAGACGTGTGTCCATATCGCAGCTGCTTC
CGGTTTCGGCGACATCATTCACGATCTGGCCAAGGTCCCCGAGTGTAACCTGCAGGCTCTGGAT
GTGGATGACAGGACACCCCTGCACTGGGCTGCAGCTGCTGGAAAGGCAGAATGCGTCCAGTCAC
TGCTGGACTTGGGCATGGACAGCAACCTGAGGGACATTAATGAGAGCACGCCCCTGGCCTACGC
CTTGTACTGTGGTCACACAGCCTGCGTCAGGCTCCTTTCCCGAGAGGGCCGAGCAGAGCCTGCT
AGGCCTCTCCCCTCTCAGAACAGTCAACCCCAAAAGAAGGAAGGACGATTCAGCGTGCTCAACC
AAATCTTCTGCAAAAACAAGAAAGAGGAGCAGAAAGCCCATCAGAAGGAGCAGAGCAGGGCCAG
ACCTAAGGAGGAGGACACCTCGGAAGTCAATGACATCATCGCCACCTTTGACAGCGTCGTGGAT
ACCAACTGCCAAGATCAGCCTGGTGACCAGGTGGACATGGTTGTCTTTAAGAAGAGGACCTCAG
AGAATTCAAAGTATCTCTTGCCAGAAAAGAAATCCCTGGCCCGGAAGGGGCTTCCACCAATCAG
AACACAGAGTCTCCCACCCATCACCCTGGGCAGTAACTTCCTGACAGCCTCCCATGGAGCCACG
TCCCACGCTGGTCTGAACTCTGGTCTTCAGCATACTGCCCAGCGTTCTCAGAAAAGCCGAAGCG
AACAGGACCTGTTGAATAATAGGACTGGCTGCCAGGTGTCACTAGATAATCCCTGGAAGGGTGA
CACTAGGCAGGCATTCTCCTGCAAGGCTTGGACTGTGTCTTCCTCTGATAAGTTACTAGACAGG
ATGTTCACTGGCCAGCCTGGTCACCAGGAGCTGTCTGGGCCACCACATCTTCCTCATCTACCTA
ATCCCTCACCAGGGCAAGGTCTACAGCATCTCTCCCCAAACAGACCTAAAGTCAGAGACTTCCC
CTTTACTCGGAACAGCCTGGCACCTCTGCCGGACCAAAAATTTCTATCTGGAGAACCCCTGAGA
ACGAACCGGGTGCTTCCAGCGATTCCAAGCCAGAGGGGACATGACCCACCAGCTGAAGAGAGCG
AGTGGTCCTCCAGTCCCACCCACGATGAAAACTGACTGCAGGTTGCTCTGTGGAAATATAGAAG
ACTTTAATTTTTCAACTTTCCAAGGGTGAGATTACTCTAGTTTATATGAGCAAAGTCTTAATTT
TAGTAAGCTGCGTTCTACAAGCCACTTACGGTTTTATAATTCAAGGTTCCTCATTTCAAATAAA
TACACTTCCTAAATACTCACTTAGAATCTCCAGGTGTGCAAACATCACCCAGTCTATGAGTTTC
TGTGGACCCCCGCCCTCAACACACTGTAATTCAGAAACAAAATACACACCTGAAAGGAAGGTTT
AGGTACGTTTCATTTATGTTTGTGCCATGTTTGCTGCTTTGTCTGGGTTTTTTTTTTGTTTGTT
TGTTTGTTTGTTTGTTTTTGTTTTTCTTATTTGGTGATTTTATGTATATTTTTAAGAGTATGCT
TTGCTGAATAAAAAAAGAAGAAGAAGAAAAGCAAA

hide sequence

RefSeq Acc Id:

XM_039102558 ⟹ XP_038958486

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,639,291 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,906,073 - 43,983,820 (+)	NCBI

RefSeq Acc Id:

XM_039102559 ⟹ XP_038958487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,639,472 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,906,207 - 43,983,820 (+)	NCBI

RefSeq Acc Id:

XM_039102560 ⟹ XP_038958488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,639,303 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,906,087 - 43,983,820 (+)	NCBI

RefSeq Acc Id:

XM_039102561 ⟹ XP_038958489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,639,313 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,906,096 - 43,983,820 (+)	NCBI

RefSeq Acc Id:

XM_039102562 ⟹ XP_038958490

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,639,472 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,906,207 - 43,983,820 (+)	NCBI

RefSeq Acc Id:

XM_039102563 ⟹ XP_038958491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,639,298 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,906,071 - 43,983,820 (+)	NCBI

RefSeq Acc Id:

XM_039102565 ⟹ XP_038958493

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,639,401 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,906,160 - 43,983,820 (+)	NCBI

RefSeq Acc Id:

XM_039102566 ⟹ XP_038958494

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,648,663 - 45,714,295 (+)	NCBI
mRatBN7.2	2	43,915,387 - 43,981,024 (+)	NCBI

RefSeq Acc Id:

XM_039102567 ⟹ XP_038958495

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,661,973 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,924,555 - 43,983,820 (+)	NCBI

RefSeq Acc Id:

XM_039102568 ⟹ XP_038958496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,658,468 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,924,555 - 43,983,820 (+)	NCBI

RefSeq Acc Id:

XM_039102569 ⟹ XP_038958497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,656,723 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,924,555 - 43,983,820 (+)	NCBI

RefSeq Acc Id:

XM_039102570 ⟹ XP_038958498

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,656,710 - 45,717,086 (+)	NCBI
mRatBN7.2	2	43,919,278 - 43,983,820 (+)	NCBI

RefSeq Acc Id:

XM_039102571 ⟹ XP_038958499

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,648,663 - 45,701,121 (+)	NCBI
mRatBN7.2	2	43,915,387 - 43,967,851 (+)	NCBI

RefSeq Acc Id:

XM_039102572 ⟹ XP_038958500

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,617,011 - 45,709,915 (+)	NCBI
mRatBN7.2	2	43,915,387 - 43,968,005 (+)	NCBI

RefSeq Acc Id:

XM_039102573 ⟹ XP_038958501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,617,141 - 45,674,404 (+)	NCBI
mRatBN7.2	2	43,883,877 - 43,945,813 (+)	NCBI

RefSeq Acc Id:

XM_063282033 ⟹ XP_063138103

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,617,169 - 45,717,086 (+)	NCBI

RefSeq Acc Id:

XM_063282034 ⟹ XP_063138104

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,617,169 - 45,717,086 (+)	NCBI

RefSeq Acc Id:

XR_005500312

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	45,648,663 - 45,716,678 (+)	NCBI
mRatBN7.2	2	43,915,387 - 43,983,820 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001256968	(Get FASTA)	NCBI Sequence Viewer
	XP_006232002	(Get FASTA)	NCBI Sequence Viewer
	XP_038958486	(Get FASTA)	NCBI Sequence Viewer
	XP_038958487	(Get FASTA)	NCBI Sequence Viewer
	XP_038958488	(Get FASTA)	NCBI Sequence Viewer
	XP_038958489	(Get FASTA)	NCBI Sequence Viewer
	XP_038958490	(Get FASTA)	NCBI Sequence Viewer
	XP_038958491	(Get FASTA)	NCBI Sequence Viewer
	XP_038958493	(Get FASTA)	NCBI Sequence Viewer
	XP_038958494	(Get FASTA)	NCBI Sequence Viewer
	XP_038958495	(Get FASTA)	NCBI Sequence Viewer
	XP_038958496	(Get FASTA)	NCBI Sequence Viewer
	XP_038958497	(Get FASTA)	NCBI Sequence Viewer
	XP_038958498	(Get FASTA)	NCBI Sequence Viewer
	XP_038958499	(Get FASTA)	NCBI Sequence Viewer
	XP_038958500	(Get FASTA)	NCBI Sequence Viewer
	XP_038958501	(Get FASTA)	NCBI Sequence Viewer
	XP_063138103	(Get FASTA)	NCBI Sequence Viewer
	XP_063138104	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AFD32166	(Get FASTA)	NCBI Sequence Viewer
	EDM10346	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018438
	ENSRNOP00000018438.6
	ENSRNOP00000095577
	ENSRNOP00000095577.2
	ENSRNOP00000104127.1
	ENSRNOP00000105149.1

RefSeq Acc Id:

NP_001256968 ⟸ NM_001270039

- UniProtKB:

H9BFG5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVYQAASNGDVNSLTAVIREDPSILECCDSEGCTPLMHAVSGRQVDTVKLLLKMGANINTQDAY
GRTSLCLATYLGWLEGCVSLLRNGAKHNIPDKNGRLPLHAATAEPDVRLLIVLLQQSSLSEINH
QDTEGMTPLHWAAFHNRPQHTQMLLKKGADPTLVDKDFKTALHWAVQSGNRILCSIILSHRQGP
SIINYDDESGKTCVHIAAASGFGDIIHDLAKVPECNLQALDVDDRTPLHWAAAAGKAECVQSLL
DLGMDSNLRDINESTPLAYALYCGHTACVRLLSREGRAEPARSLPSQNSQPQKKEGRFSVLNQI
FCKNKKEEQKAHQKEQSRARPKEEDTSEVNDIIATFDSVVDTNCQDQPGDQVDMVVFKKRTSEN
SKYLLPEKKSLARKGLPPIRTQSLPPITLGSNFLTASHGATSHAGLNSGLQHTAQRSQKSRSEQ
DLLNNRTGCQVSLDNPWKGDTRQAFSCKAWTVSSSDKLLDRMFTGQPGHQELSGPPHLPHLPNP
SPGQGLQHLSPNRPKVRDFPFTRNSLAPLPDQKFLSGEPLRTNRVLPAIPSQRGHDPPAEESEW
SSSPTHDEN

hide sequence

RefSeq Acc Id:	XP_006232002 ⟸ XM_006231940
- Peptide Label:	isoform X1
- UniProtKB:	F1M1X7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMRQATMDFSSSSVFDQHKGDSSEEVDLTMVYQAASNGDVNSLTAVIREDPSILECCDSEGCTP LMHAVSGRQVDTVKLLLKMGANINTQDAYGRTSLCLATYLGWLEGCVSLLRNGAKHNIPDKNGR LPLHAATAEPDVRLLIVLLQQSSLSEINHQDTEGMTPLHWAAFHNRPQHTQMLLKKGADPTLVD KDFKTALHWAVQSGNRILCSIILSHRQGPSIINYDDESGKTCVHIAAASGFGDIIHDLAKVPEC NLQALDVDDRTPLHWAAAAGKAECVQSLLDLGMDSNLRDINESTPLAYALYCGHTACVRLLSRE GRAEPARPLPSQNSQPQKKEGRFSVLNQIFCKNKKEEQKAHQKEQSRARPKEEDTSEVNDIIAT FDSVVDTNCQDQPGDQVDMVVFKKRTSENSKYLLPEKKSLARKGLPPIRTQSLPPITLGSNFLT ASHGATSHAGLNSGLQHTAQRSQKSRSEQDLLNNRTGCQVSLDNPWKGDTRQAFSCKAWTVSSS DKLLDRMFTGQPGHQELSGPPHLPHLPNPSPGQGLQHLSPNRPKVRDFPFTRNSLAPLPDQKFL SGEPLRTNRVLPAIPSQRGHDPPAEESEWSSSPTHDEN hide sequence

Ensembl Acc Id:

ENSRNOP00000018438 ⟸ ENSRNOT00000018438

RefSeq Acc Id:	XP_038958501 ⟸ XM_039102573
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038958491 ⟸ XM_039102563
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AJZ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958486 ⟸ XM_039102558
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038958488 ⟸ XM_039102560
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AJZ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958489 ⟸ XM_039102561
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AJZ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958493 ⟸ XM_039102565
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AJZ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958490 ⟸ XM_039102562
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AJZ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958487 ⟸ XM_039102559
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038958494 ⟸ XM_039102566
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038958500 ⟸ XM_039102572
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038958499 ⟸ XM_039102571
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038958498 ⟸ XM_039102570
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038958495 ⟸ XM_039102567
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038958496 ⟸ XM_039102568
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038958497 ⟸ XM_039102569
- Peptide Label:	isoform X8

Ensembl Acc Id:

ENSRNOP00000095577 ⟸ ENSRNOT00000098621

RefSeq Acc Id:	XP_063138103 ⟸ XM_063282033
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AJZ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138104 ⟸ XM_063282034
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AJZ0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000104127 ⟸ ENSRNOT00000122996

Ensembl Acc Id:

ENSRNOP00000105149 ⟸ ENSRNOT00000122008

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M1X7-F1-model_v2	AlphaFold	F1M1X7	1-614	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307735	AgrOrtholog
BioCyc Gene	G2FUF-54405	BioCyc
Ensembl Genes	ENSRNOG00000013555	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018438	ENTREZGENE
	ENSRNOT00000018438.9	UniProtKB/TrEMBL
	ENSRNOT00000098621	ENTREZGENE
	ENSRNOT00000098621.2	UniProtKB/TrEMBL
	ENSRNOT00000122008.1	UniProtKB/TrEMBL
	ENSRNOT00000122996.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
InterPro	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
KEGG Report	rno:361898	UniProtKB/TrEMBL
NCBI Gene	361898	ENTREZGENE
PANTHER	ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	ANKYRIN REPEAT DOMAIN 55	UniProtKB/TrEMBL
Pfam	Ank	UniProtKB/TrEMBL
	Ank_2	UniProtKB/TrEMBL
PhenoGen	Ankrd55	PhenoGen
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013555	RatGTEx
SMART	ANK	UniProtKB/TrEMBL
Superfamily-SCOP	ANK	UniProtKB/TrEMBL
UniProt	A0A8I6AJZ0	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L3Z5_RAT	UniProtKB/TrEMBL
	A0ABK0LTV6_RAT	UniProtKB/TrEMBL
	F1M1X7	ENTREZGENE, UniProtKB/TrEMBL
	H9BFG5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Ankrd55	ankyrin repeat domain 55	RGD1307735_predicted	similar to hypothetical protein FLJ11795 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1307735_predicted	similar to hypothetical protein FLJ11795 (predicted)	LOC361898_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361898_predicted	similar to hypothetical protein FLJ11795 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD