Dzip1 (DAZ interacting zinc finger protein 1) - Rat Genome Database

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Gene: Dzip1 (DAZ interacting zinc finger protein 1) Rattus norvegicus
Analyze
Symbol: Dzip1
Name: DAZ interacting zinc finger protein 1
RGD ID: 1307701
Description: Predicted to enable BBSome binding activity; molecular adaptor activity; and protein sequestering activity. Predicted to be involved in several processes, including cilium organization; positive regulation of protein localization to cilium; and protein-containing complex localization to centriolar satellite. Predicted to act upstream of or within several processes, including positive regulation of cilium assembly; protein localization to cilium; and smoothened signaling pathway. Predicted to be located in ciliary base; microtubule organizing center; and nuclear speck. Predicted to be part of ciliary transition fiber. Predicted to be active in ciliary basal body and cytoplasm. Human ortholog(s) of this gene implicated in mitral valve prolapse and spermatogenic failure 47. Orthologous to human DZIP1 (DAZ interacting zinc finger protein 1); INTERACTS WITH 17alpha-ethynylestradiol; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cilium assembly protein DZIP1; DAZ interacting protein 1; LOC364475; zinc finger protein DZIP1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Dzip1-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815102,363,392 - 102,417,085 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl15102,363,392 - 102,417,085 (-)EnsemblGRCr8
mRatBN7.21595,956,329 - 96,009,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1595,956,398 - 96,010,066 (-)EnsemblmRatBN7.2
Rnor_6.015104,117,551 - 104,168,574 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,117,556 - 104,170,958 (-)Ensemblrn6Rnor6.0
Rnor_5.015107,540,953 - 107,592,866 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.415103,795,014 - 103,864,850 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1594,806,412 - 94,857,014 (-)NCBICelera
RGSC_v3.115103,810,987 - 103,880,938 (-)NCBI
Cytogenetic Map15q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriolar satellite  (IEA,ISO)
centriole  (IEA,ISO)
centrosome  (ISO)
ciliary basal body  (IBA,IEA,ISO)
ciliary base  (IEA,ISO)
ciliary transition fiber  (IEA,ISO)
cytoplasm  (IBA,IEA,ISO)
cytosol  (ISO)
nuclear speck  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15081113   PMID:16368222   PMID:19852954   PMID:23955340   PMID:27979967   PMID:29487109  


Genomics

Comparative Map Data
Dzip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr815102,363,392 - 102,417,085 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl15102,363,392 - 102,417,085 (-)EnsemblGRCr8
mRatBN7.21595,956,329 - 96,009,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1595,956,398 - 96,010,066 (-)EnsemblmRatBN7.2
Rnor_6.015104,117,551 - 104,168,574 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,117,556 - 104,170,958 (-)Ensemblrn6Rnor6.0
Rnor_5.015107,540,953 - 107,592,866 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.415103,795,014 - 103,864,850 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1594,806,412 - 94,857,014 (-)NCBICelera
RGSC_v3.115103,810,987 - 103,880,938 (-)NCBI
Cytogenetic Map15q24NCBI
DZIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381395,578,202 - 95,644,706 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1395,578,202 - 95,644,740 (-)Ensemblhg38GRCh38
GRCh371396,230,456 - 96,296,960 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361395,028,457 - 95,094,958 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1377,078,243 - 77,144,749 (-)NCBICelera
Cytogenetic Map13q32.1NCBI
HuRef1376,828,210 - 76,894,751 (-)NCBIHuRef
CHM1_11396,200,591 - 96,267,097 (-)NCBICHM1_1
T2T-CHM13v2.01394,782,752 - 94,849,251 (-)NCBIT2T-CHM13v2.0
Dzip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,112,927 - 119,162,947 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14119,112,932 - 119,162,872 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3814118,875,517 - 118,925,537 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,875,520 - 118,925,460 (-)Ensemblmm10GRCm38
MGSCv3714119,274,742 - 119,322,389 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3614118,010,701 - 118,058,348 (-)NCBIMGSCv36mm8
Celera14117,437,607 - 117,475,760 (-)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1462.56NCBI
Dzip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,428,945 - 14,483,961 (+)Ensembl
ChiLan1.0NW_00495540414,428,026 - 14,481,106 (+)NCBIChiLan1.0ChiLan1.0
DZIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21497,113,401 - 97,177,034 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11395,782,270 - 95,845,876 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01376,757,062 - 76,820,627 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11395,912,026 - 95,975,563 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1395,913,144 - 95,972,799 (-)EnsemblpanPan2panpan1.1
DZIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12246,227,012 - 46,281,224 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2246,227,223 - 46,281,609 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2246,011,377 - 46,063,381 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02246,655,335 - 46,710,221 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2246,655,342 - 46,710,000 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12246,318,751 - 46,370,836 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02246,352,648 - 46,404,663 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02246,358,568 - 46,410,445 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dzip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945181,746,610 - 181,810,530 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647214,143,797 - 14,207,982 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647214,141,502 - 14,205,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DZIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,147,004 - 65,204,299 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11165,147,003 - 65,204,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21172,008,827 - 72,066,386 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DZIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,381,019 - 74,444,805 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl374,382,136 - 74,441,973 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604630,808,746 - 30,872,309 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dzip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,303,685 - 2,354,319 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248792,301,172 - 2,355,665 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dzip1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1126,986,080 - 7,038,874 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:228
Count of miRNA genes:148
Interacting mature miRNAs:178
Transcripts:ENSRNOT00000038596, ENSRNOT00000038611
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1560213984105213984Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1582194914108192169Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1574735564106469153Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1588677086104695021Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1582503470108192169Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1582714037106778197Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)1588677086104695021Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1564571127108192169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
7411646Foco21Food consumption QTL 2123.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1584278281108192169Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)1561710951106710951Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)1583700787108192169Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1559257087104257087Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1567399137108192169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1582194914108192169Rat

Markers in Region
BE109120  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21595,957,110 - 95,957,260 (+)MAPPERmRatBN7.2
Rnor_6.015104,118,333 - 104,118,482NCBIRnor6.0
Rnor_5.015107,541,735 - 107,541,884UniSTSRnor5.0
RGSC_v3.415103,795,990 - 103,796,139UniSTSRGSC3.4
Celera1594,807,194 - 94,807,343UniSTS
RH 3.4 Map15658.9UniSTS
Cytogenetic Map15q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 89 59 6 353 189 11 142 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC089964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000038596   ⟹   ENSRNOP00000038595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15102,363,392 - 102,414,490 (-)Ensembl
mRatBN7.2 Ensembl1595,956,398 - 96,007,425 (-)Ensembl
Rnor_6.0 Ensembl15104,118,279 - 104,168,638 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl15104,168,640 - 104,170,958 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093385   ⟹   ENSRNOP00000076203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15102,363,392 - 102,414,409 (-)Ensembl
mRatBN7.2 Ensembl1595,956,398 - 96,007,455 (-)Ensembl
Rnor_6.0 Ensembl15104,117,556 - 104,168,564 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104201   ⟹   ENSRNOP00000086923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1595,956,398 - 96,010,066 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106262   ⟹   ENSRNOP00000082462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl15102,363,392 - 102,417,085 (-)Ensembl
mRatBN7.2 Ensembl1595,956,398 - 96,010,066 (-)Ensembl
RefSeq Acc Id: NM_001427239   ⟹   NP_001414168
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,363,392 - 102,417,085 (-)NCBI
RefSeq Acc Id: XM_006252466   ⟹   XP_006252528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,893 (-)NCBI
mRatBN7.21595,956,396 - 96,009,974 (-)NCBI
Rnor_6.015104,117,618 - 104,168,574 (-)NCBI
Rnor_5.015107,540,953 - 107,592,866 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093981   ⟹   XP_038949909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,893 (-)NCBI
mRatBN7.21595,956,329 - 96,009,977 (-)NCBI
RefSeq Acc Id: XM_039093987   ⟹   XP_038949915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,398,529 (-)NCBI
mRatBN7.21595,956,396 - 95,987,846 (-)NCBI
RefSeq Acc Id: XM_063274496   ⟹   XP_063130566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,894 (-)NCBI
RefSeq Acc Id: XM_063274497   ⟹   XP_063130567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,893 (-)NCBI
RefSeq Acc Id: XM_063274498   ⟹   XP_063130568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,894 (-)NCBI
RefSeq Acc Id: XM_063274499   ⟹   XP_063130569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,893 (-)NCBI
RefSeq Acc Id: XM_063274500   ⟹   XP_063130570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,368 (-)NCBI
RefSeq Acc Id: XM_063274501   ⟹   XP_063130571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,368 (-)NCBI
RefSeq Acc Id: XM_063274502   ⟹   XP_063130572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,368 (-)NCBI
RefSeq Acc Id: XM_063274503   ⟹   XP_063130573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,368 (-)NCBI
RefSeq Acc Id: XM_063274504   ⟹   XP_063130574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,894 (-)NCBI
RefSeq Acc Id: XM_063274505   ⟹   XP_063130575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,893 (-)NCBI
RefSeq Acc Id: XM_063274506   ⟹   XP_063130576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,894 (-)NCBI
RefSeq Acc Id: XM_063274507   ⟹   XP_063130577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,368 (-)NCBI
RefSeq Acc Id: XM_063274509   ⟹   XP_063130579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr815102,364,098 - 102,416,368 (-)NCBI
RefSeq Acc Id: XP_006252528   ⟸   XM_006252466
- Peptide Label: isoform X7
- UniProtKB: F1MA25 (UniProtKB/TrEMBL),   A0A8I6A380 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038595   ⟸   ENSRNOT00000038596
Ensembl Acc Id: ENSRNOP00000076203   ⟸   ENSRNOT00000093385
RefSeq Acc Id: XP_038949909   ⟸   XM_039093981
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZVC1 (UniProtKB/TrEMBL),   A0A1W2Q6C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949915   ⟸   XM_039093987
- Peptide Label: isoform X10
Ensembl Acc Id: ENSRNOP00000086923   ⟸   ENSRNOT00000104201
Ensembl Acc Id: ENSRNOP00000082462   ⟸   ENSRNOT00000106262
RefSeq Acc Id: NP_001414168   ⟸   NM_001427239
- UniProtKB: A0A8I5ZVC1 (UniProtKB/TrEMBL),   A0A1W2Q6C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130576   ⟸   XM_063274506
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A380 (UniProtKB/TrEMBL),   F1MA25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130568   ⟸   XM_063274498
- Peptide Label: isoform X1
- UniProtKB: A0A1W2Q6C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130574   ⟸   XM_063274504
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A380 (UniProtKB/TrEMBL),   F1MA25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130566   ⟸   XM_063274496
- Peptide Label: isoform X1
- UniProtKB: A0A1W2Q6C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130575   ⟸   XM_063274505
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A380 (UniProtKB/TrEMBL),   F1MA25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130569   ⟸   XM_063274499
- Peptide Label: isoform X1
- UniProtKB: A0A1W2Q6C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130567   ⟸   XM_063274497
- Peptide Label: isoform X1
- UniProtKB: A0A1W2Q6C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130577   ⟸   XM_063274507
- Peptide Label: isoform X8
- UniProtKB: F1MA25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130579   ⟸   XM_063274509
- Peptide Label: isoform X9
- UniProtKB: F1MA25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130572   ⟸   XM_063274502
- Peptide Label: isoform X5
- UniProtKB: A0A1W2Q6C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130573   ⟸   XM_063274503
- Peptide Label: isoform X6
- UniProtKB: A0A1W2Q6C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130570   ⟸   XM_063274500
- Peptide Label: isoform X2
- UniProtKB: A0A1W2Q6C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130571   ⟸   XM_063274501
- Peptide Label: isoform X3
- UniProtKB: A0A1W2Q6C7 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type   Cilium assembly protein DZIP1 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1W2Q6C7-F1-model_v2 AlphaFold A0A1W2Q6C7 1-848 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699875
Promoter ID:EPDNEW_R10397
Type:initiation region
Name:Dzip1_2
Description:DAZ interacting zinc finger protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10398  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015104,168,662 - 104,168,722EPDNEW
RGD ID:13699884
Promoter ID:EPDNEW_R10398
Type:single initiation site
Name:Dzip1_1
Description:DAZ interacting zinc finger protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10397  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.015104,171,040 - 104,171,100EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307701 AgrOrtholog
BioCyc Gene G2FUF-12432 BioCyc
Ensembl Genes ENSRNOG00000010311 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038596.8 UniProtKB/TrEMBL
  ENSRNOT00000093385.3 UniProtKB/TrEMBL
  ENSRNOT00000106262 ENTREZGENE
  ENSRNOT00000106262.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7314416 IMAGE-MGC_LOAD
InterPro DZIP1_N UniProtKB/TrEMBL
  DZIP_RILPL UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
MGC_CLONE MGC:109326 IMAGE-MGC_LOAD
NCBI Gene 364475 ENTREZGENE
PANTHER ZINC FINGER PROTEIN DZIP1 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN DZIP1 UniProtKB/TrEMBL
Pfam Dzip-like_N UniProtKB/TrEMBL
PhenoGen Dzip1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010311 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
UniProt A0A1W2Q6C7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A380 ENTREZGENE
  A6HUH0_RAT UniProtKB/TrEMBL
  F1MA25 ENTREZGENE, UniProtKB/TrEMBL
  Q5EB75_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-06-05 Dzip1  DAZ interacting zinc finger protein 1  Dzip1  DAZ interacting protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Dzip1  DAZ interacting protein 1  Dzip1_predicted  DAZ interacting protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Dzip1_predicted  DAZ interacting protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED