Fam117b (family with sequence similarity 117, member B) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Fam117b (family with sequence similarity 117, member B) Rattus norvegicus
Analyze
Symbol: Fam117b
Name: family with sequence similarity 117, member B
RGD ID: 1307676
Description: Orthologous to human FAM117B (family with sequence similarity 117 member B); INTERACTS WITH 17beta-estradiol; 2,3,4,7,8-Pentachlorodibenzofuran; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Als2cr13; amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13; amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (human); LOC363236
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8968,834,334 - 68,902,543 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl968,834,354 - 68,902,543 (+)EnsemblGRCr8
mRatBN7.2961,340,284 - 61,418,531 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,340,249 - 61,408,483 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx969,840,399 - 69,908,549 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0974,955,951 - 75,024,103 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0973,274,661 - 73,342,815 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0966,716,969 - 66,784,487 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,716,969 - 66,784,487 (+)Ensemblrn6Rnor6.0
Rnor_5.0966,520,071 - 66,596,356 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4958,476,287 - 58,544,228 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera958,775,417 - 58,842,774 (+)NCBICelera
RGSC_v3.1958,622,696 - 58,688,285 (+)NCBI
Cytogenetic Map9q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,4,7,8-Pentachlorodibenzofuran  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hexadecanoic acid  (ISO)
hydrogen cyanide  (ISO)
hydroquinone  (ISO)
iron atom  (EXP)
iron(0)  (EXP)
isoprenaline  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (EXP)
phenformin  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
potassium cyanide  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (EXP)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

Comparative Map Data
Fam117b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8968,834,334 - 68,902,543 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl968,834,354 - 68,902,543 (+)EnsemblGRCr8
mRatBN7.2961,340,284 - 61,418,531 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,340,249 - 61,408,483 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx969,840,399 - 69,908,549 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0974,955,951 - 75,024,103 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0973,274,661 - 73,342,815 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0966,716,969 - 66,784,487 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl966,716,969 - 66,784,487 (+)Ensemblrn6Rnor6.0
Rnor_5.0966,520,071 - 66,596,356 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4958,476,287 - 58,544,228 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera958,775,417 - 58,842,774 (+)NCBICelera
RGSC_v3.1958,622,696 - 58,688,285 (+)NCBI
Cytogenetic Map9q31NCBI
FAM117B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382202,634,969 - 202,769,757 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2202,634,969 - 202,769,757 (+)Ensemblhg38GRCh38
GRCh372203,499,692 - 203,634,480 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362203,208,456 - 203,342,725 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2197,252,014 - 197,387,230 (+)NCBICelera
Cytogenetic Map2q33.2NCBI
HuRef2195,346,934 - 195,481,383 (+)NCBIHuRef
CHM1_12203,506,619 - 203,641,107 (+)NCBICHM1_1
T2T-CHM13v2.02203,116,388 - 203,251,211 (+)NCBIT2T-CHM13v2.0
Fam117b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39159,952,165 - 60,024,507 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl159,952,165 - 60,024,505 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38159,913,006 - 59,985,348 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl159,913,006 - 59,985,346 (+)Ensemblmm10GRCm38
MGSCv37159,969,850 - 60,042,190 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36159,857,552 - 59,929,893 (+)NCBIMGSCv36mm8
Celera160,428,884 - 60,500,816 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map130.44NCBI
Fam117b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545712,107,141 - 12,180,614 (-)NCBIChiLan1.0ChiLan1.0
FAM117B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213105,265,851 - 105,400,190 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B105,280,848 - 105,415,187 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B89,896,400 - 90,030,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B208,043,335 - 208,177,158 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B208,042,146 - 208,173,180 (+)EnsemblpanPan2panpan1.1
FAM117B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13711,583,542 - 11,668,488 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3711,583,684 - 11,661,903 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3712,467,063 - 12,552,009 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03711,520,177 - 11,605,348 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3711,520,315 - 11,599,177 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13711,476,433 - 11,561,749 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03711,448,107 - 11,533,023 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03711,441,918 - 11,526,872 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam117b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303159,783,034 - 159,876,695 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367261,753,652 - 1,843,405 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367261,753,318 - 1,846,977 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM117B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15106,183,205 - 106,284,313 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115106,183,217 - 106,284,318 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215117,639,859 - 117,740,819 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM117B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11088,370,979 - 88,513,138 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040110,878,963 - 111,018,660 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam117b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476513,701,345 - 13,782,952 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476513,661,928 - 13,782,962 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam117b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v156,372,980 - 6,439,718 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam117b
660 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:967
Count of miRNA genes:344
Interacting mature miRNAs:458
Transcripts:ENSRNOT00000031261
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95746049778547958Rat
1578659Tspe1Trichinella spiralis expulsion QTL 14.8parasite quantity (VT:0010441)logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)96887549773185088Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
D9Rat16  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8968,875,497 - 68,875,676 (+)Marker Load Pipeline
mRatBN7.2961,381,434 - 61,381,613 (+)MAPPERmRatBN7.2
Rnor_6.0966,757,444 - 66,757,620NCBIRnor6.0
Rnor_5.0966,570,118 - 66,570,294UniSTSRnor5.0
RGSC_v3.4958,516,719 - 58,516,896RGDRGSC3.4
RGSC_v3.4958,516,720 - 58,516,896UniSTSRGSC3.4
Celera958,815,886 - 58,816,062UniSTS
RGSC_v3.1958,663,702 - 58,663,878RGD
RH 3.4 Map9495.2UniSTS
RH 3.4 Map9495.2RGD
RH 2.0 Map9574.9RGD
SHRSP x BN Map942.2298RGD
Cytogenetic Map9q31UniSTS
RH133076  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2961,408,705 - 61,408,916 (+)MAPPERmRatBN7.2
Rnor_6.0966,784,710 - 66,784,920NCBIRnor6.0
Rnor_5.0966,596,579 - 66,596,789UniSTSRnor5.0
RGSC_v3.4958,544,451 - 58,544,661UniSTSRGSC3.4
Celera958,842,997 - 58,843,207UniSTS
RH 3.4 Map9515.3UniSTS
Cytogenetic Map9q31UniSTS
BE107857  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2961,390,173 - 61,390,366 (+)MAPPERmRatBN7.2
Rnor_6.0966,766,179 - 66,766,371NCBIRnor6.0
Rnor_5.0966,578,074 - 66,578,266UniSTSRnor5.0
RGSC_v3.4958,525,452 - 58,525,644UniSTSRGSC3.4
Celera958,824,453 - 58,824,645UniSTS
RH 3.4 Map9495.8UniSTS
Cytogenetic Map9q31UniSTS
RH137964  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2961,397,122 - 61,397,330 (+)MAPPERmRatBN7.2
Rnor_6.0966,773,127 - 66,773,334NCBIRnor6.0
Rnor_5.0966,585,022 - 66,585,229UniSTSRnor5.0
RGSC_v3.4958,532,400 - 58,532,607UniSTSRGSC3.4
Celera958,831,401 - 58,831,608UniSTS
RH 3.4 Map9514.9UniSTS
Cytogenetic Map9q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000031261   ⟹   ENSRNOP00000029910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl968,834,354 - 68,902,543 (+)Ensembl
mRatBN7.2 Ensembl961,340,249 - 61,408,483 (+)Ensembl
Rnor_6.0 Ensembl966,716,969 - 66,784,487 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111864   ⟹   ENSRNOP00000083133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl968,834,354 - 68,902,543 (+)Ensembl
mRatBN7.2 Ensembl961,340,249 - 61,408,483 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113257   ⟹   ENSRNOP00000093486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl961,340,269 - 61,406,212 (+)Ensembl
RefSeq Acc Id: NM_001108797   ⟹   NP_001102267
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8968,834,354 - 68,902,543 (+)NCBI
mRatBN7.2961,340,284 - 61,408,485 (+)NCBI
Rnor_6.0966,716,969 - 66,784,487 (+)NCBI
Rnor_5.0966,520,071 - 66,596,356 (+)NCBI
RGSC_v3.4958,476,287 - 58,544,228 (+)RGD
Celera958,775,417 - 58,842,774 (+)RGD
Sequence:
RefSeq Acc Id: XM_039083858   ⟹   XP_038939786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8968,834,334 - 68,902,543 (+)NCBI
mRatBN7.2961,340,291 - 61,408,485 (+)NCBI
RefSeq Acc Id: XM_039083860   ⟹   XP_038939788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8968,835,178 - 68,902,543 (+)NCBI
mRatBN7.2961,341,104 - 61,408,485 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001102267 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939786 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939788 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL98943 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000029910
  ENSRNOP00000029910.6
  ENSRNOP00000083133
  ENSRNOP00000083133.1
RefSeq Acc Id: NP_001102267   ⟸   NM_001108797
- UniProtKB: F1M8D5 (UniProtKB/TrEMBL),   A0A8I6ALF3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000029910   ⟸   ENSRNOT00000031261
RefSeq Acc Id: XP_038939786   ⟸   XM_039083858
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYM6 (UniProtKB/TrEMBL),   A0A8I6ALF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939788   ⟸   XM_039083860
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000083133   ⟸   ENSRNOT00000111864
Ensembl Acc Id: ENSRNOP00000093486   ⟸   ENSRNOT00000113257

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M8D5-F1-model_v2 AlphaFold F1M8D5 1-345 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307676 AgrOrtholog
BioCyc Gene G2FUF-27389 BioCyc
Ensembl Genes ENSRNOG00000022066 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031261 ENTREZGENE
  ENSRNOT00000031261.7 UniProtKB/TrEMBL
  ENSRNOT00000111864 ENTREZGENE
  ENSRNOT00000111864.2 UniProtKB/TrEMBL
InterPro Glcci1/FAM117 UniProtKB/TrEMBL
KEGG Report rno:363236 UniProtKB/TrEMBL
NCBI Gene 363236 ENTREZGENE
PANTHER PTHR14972 UniProtKB/TrEMBL
  PTHR14972:SF6 UniProtKB/TrEMBL
Pfam FAM117 UniProtKB/TrEMBL
PhenoGen Fam117b PhenoGen
RatGTEx ENSRNOG00000022066 RatGTEx
UniProt A0A8I5ZYM6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALF3 ENTREZGENE
  A6IPB7_RAT UniProtKB/TrEMBL
  F1M8D5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-26 Fam117b  family with sequence similarity 117, member B  Als2cr13  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Als2cr13  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (human)  Als2cr13  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Als2cr13  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13  Als2cr13_predicted  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Als2cr13_predicted  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (predicted)      Symbol and Name status set to approved 70820 APPROVED