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Gene: Celf4 (CUGBP, Elav-like family member 4) Rattus norvegicus

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Symbol:

Celf4

Name:

CUGBP, Elav-like family member 4

RGD ID:

1307630

Description:

Predicted to enable mRNA binding activity and pre-mRNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within several processes, including mRNA splicing, via spliceosome; negative regulation of excitatory postsynaptic potential; and regulation of mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nucleus. Orthologous to human CELF4 (CUGBP Elav-like family member 4); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

bruno-like 4, RNA binding protein; bruno-like 4, RNA binding protein (Drosophila); Brunol4; CUG-BP- and ETR-3-like factor 4; CUGBP Elav-like family member 4; LOC307540

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CELF4 (CUGBP Elav-like family member 4)	HGNC	Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Treefam
Mus musculus (house mouse):	Celf4 (CUGBP, Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Celf4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CELF4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CELF4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC106144891 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CELF4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CELF4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Celf4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Celf4 (CUGBP Elav-like family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PCLAF (PCNA clamp associated factor)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CELF4 (CUGBP Elav-like family member 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Celf4 (CUGBP, Elav-like family member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	celf4 (CUGBP, Elav-like family member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	celf4 (CUGBP, Elav-like family member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	bru3	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-75	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-75	Alliance	DIOPT (Hieranoid\|OMA\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	celf4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	celf4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	17,061,284 - 17,339,747 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	17,061,293 - 17,339,571 (-)	Ensembl				GRCr8
mRatBN7.2	18	16,786,578 - 17,065,045 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	16,786,867 - 17,064,786 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	16,966,581 - 17,274,337 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	17,749,257 - 18,057,008 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	17,031,257 - 17,309,765 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	17,689,090 - 18,079,835 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	17,698,038 - 17,716,880 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	17,442,710 - 17,830,510 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	17,347,052 - 17,614,411 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	16,689,194 - 16,964,152 (-)	NCBI		Celera
RGSC_v3.1	18	17,374,849 - 17,640,782 (-)	NCBI
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Developmental Disease (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

CGP 52608 (ISO)

choline (ISO)

cobalt atom (ISO)

D-glucose (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

fructose (ISO)

fulvestrant (ISO)

glucose (ISO)

L-methionine (ISO)

methapyrilene (ISO)

methimazole (EXP)

methoxychlor (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

paracetamol (ISO)

pentanal (ISO)

propanal (ISO)

propiconazole (EXP)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium fluoride (ISO)

streptozocin (ISO)

sulfadimethoxine (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alternative mRNA splicing, via spliceosome (ISO)

in utero embryonic development (ISO)

mRNA processing (IEA)

mRNA splice site recognition (ISO)

mRNA splicing, via spliceosome (IEA)

negative regulation of excitatory postsynaptic potential (ISO)

negative regulation of mRNA splicing, via spliceosome (ISO)

positive regulation of mRNA splicing, via spliceosome (IEA,ISO)

regulation of alternative mRNA splicing, via spliceosome (IEA,ISO)

regulation of mRNA splicing, via spliceosome (IEA)

regulation of retina development in camera-type eye (ISO)

RNA splicing (IEA)

Cellular Component

cytoplasm (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

Molecular Function

mRNA binding (IEA,ISO)

nucleic acid binding (IEA)

pre-mRNA binding (IEA,ISO)

protein binding (ISO)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11158314	PMID:15009664	PMID:19720736	PMID:21745337	PMID:23636947	PMID:23932931	PMID:27996060

Genomics

Comparative Map Data

Celf4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	17,061,284 - 17,339,747 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	17,061,293 - 17,339,571 (-)	Ensembl				GRCr8
mRatBN7.2	18	16,786,578 - 17,065,045 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	16,786,867 - 17,064,786 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	16,966,581 - 17,274,337 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	17,749,257 - 18,057,008 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	17,031,257 - 17,309,765 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	17,689,090 - 18,079,835 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	17,698,038 - 17,716,880 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	17,442,710 - 17,830,510 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	17,347,052 - 17,614,411 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	16,689,194 - 16,964,152 (-)	NCBI		Celera
RGSC_v3.1	18	17,374,849 - 17,640,782 (-)	NCBI
Cytogenetic Map	18	p12	NCBI

CELF4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	37,242,844 - 37,565,798 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	37,243,040 - 37,565,994 (-)	Ensembl			hg38	GRCh38
GRCh37	18	34,823,003 - 35,145,761 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	33,077,828 - 33,399,941 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	18	33,087,771 - 33,399,602	NCBI
Celera	18	31,632,904 - 31,980,932 (-)	NCBI		Celera
Cytogenetic Map	18	q12.2	NCBI
HuRef	18	31,681,881 - 32,004,740 (-)	NCBI		HuRef
CHM1_1	18	34,750,014 - 34,992,394 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	37,436,109 - 37,759,418 (-)	NCBI		T2T-CHM13v2.0

Celf4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	25,610,677 - 25,887,577 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	25,610,689 - 25,887,214 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	25,477,620 - 25,754,520 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	25,477,632 - 25,754,157 (-)	Ensembl			mm10	GRCm38
MGSCv37	18	25,636,121 - 25,912,484 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	25,622,125 - 25,897,167 (-)	NCBI		MGSCv36	mm8
Celera	18	25,963,423 - 26,269,707 (-)	NCBI		Celera
Cytogenetic Map	18	A2	NCBI
cM Map	18	13.92	NCBI

Celf4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	23,617,421 - 23,898,347 (-)	Ensembl
ChiLan1.0	NW_004955402	23,607,160 - 23,898,495 (-)	NCBI	ChiLan1.0	ChiLan1.0

CELF4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	54,634,921 - 54,958,087 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	40,327,510 - 40,650,933 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	30,495,149 - 30,818,358 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	34,052,355 - 34,374,624 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	34,068,123 - 34,374,372 (-)	Ensembl			panPan2	panpan1.1

CELF4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	52,940,941 - 53,012,206 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	52,838,558 - 53,010,041 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	52,129,759 - 52,428,092 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	52,673,506 - 52,972,302 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	52,673,273 - 52,971,138 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	52,364,227 - 52,662,451 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	52,387,439 - 52,685,576 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	52,673,900 - 52,972,133 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC106144891
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	48,682,698 - 48,683,334 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936517	8,010,133 - 8,010,721 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CELF4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	121,066,772 - 121,381,028 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	121,065,604 - 121,381,052 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	113,836,533 - 114,193,175 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CELF4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	43,314,960 - 43,635,301 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	43,603,021 - 43,624,537 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	17,860,703 - 18,181,333 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Celf4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624779	11,452,545 - 11,731,251 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624779	11,443,993 - 11,731,208 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Celf4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	15	18,115,625 - 18,391,795 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Celf4
1894 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	77
Count of miRNA genes:	66
Interacting mature miRNAs:	75
Transcripts:	ENSRNOT00000061151
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	12219237	26822399	Rat
2301409	Cm70	Cardiac mass QTL 70		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	18	7065728	52065728	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	15642280	31610627	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	12216684	31644508	Rat
12904716	Am21	Aortic mass QTL 21		0.005	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	7065728	52065728	Rat
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	26032889	Rat
12904714	Cm131	Cardiac mass QTL 131		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	7065728	52065728	Rat
12904715	Cm132	Cardiac mass QTL 132		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	7065728	52065728	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	1	25071266	Rat
6903345	Bp349	Blood pressure QTL 349	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	15226101	42690662	Rat
6903347	Bp350	Blood pressure QTL 350	4.4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5460455	42690191	Rat
6903349	Bp351	Blood pressure QTL 351	3.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
6903351	Bp352	Blood pressure QTL 352	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	12216684	31644508	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	31610627	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	44930869	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	12219237	26822399	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	12066482	57066482	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	1	25022372	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	12219237	26822399	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	12219237	26822399	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	3811902	30809809	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	12219237	26822399	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	12219237	26822399	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34566578	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	12219237	26822399	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	26032889	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4482648	49482648	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	54490981	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
11565454	Kidm59	Kidney mass QTL 59		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	7065728	52065728	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	86134022	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34566578	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	4307354	49307354	Rat

Markers in Region

D18Rat70

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	17,047,551 - 17,047,766 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	18,062,539 - 18,062,751	NCBI	Rnor6.0
Rnor_5.0	18	17,813,214 - 17,813,426	UniSTS	Rnor5.0
RGSC_v3.4	18	17,596,679 - 17,596,891	UniSTS	RGSC3.4
RGSC_v3.4	18	17,596,631 - 17,596,903	RGD	RGSC3.4
Celera	18	16,947,594 - 16,947,806	UniSTS
RGSC_v3.1	18	17,623,325 - 17,623,537	RGD
RH 3.4 Map	18	193.5	RGD
RH 3.4 Map	18	193.5	UniSTS
RH 2.0 Map	18	694.5	RGD
SHRSP x BN Map	18	9.25	RGD
FHH x ACI Map	18	12.22	RGD
Cytogenetic Map	18	p12	UniSTS

D18Rat47

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	18	17,321,150 - 17,321,400 (+)	Marker Load Pipeline
mRatBN7.2	18	17,046,480 - 17,046,730 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	18,061,468 - 18,061,717	NCBI	Rnor6.0
Rnor_5.0	18	17,812,143 - 17,812,392	UniSTS	Rnor5.0
RGSC_v3.4	18	17,595,607 - 17,595,857	RGD	RGSC3.4
RGSC_v3.4	18	17,595,608 - 17,595,857	UniSTS	RGSC3.4
Celera	18	16,946,523 - 16,946,772	UniSTS
RGSC_v3.1	18	17,622,253 - 17,622,503	RGD
SHRSP x BN Map	18	9.29	UniSTS
SHRSP x BN Map	18	9.29	RGD
Cytogenetic Map	18	p12	UniSTS

D18Rat105

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	16,905,110 - 16,905,341 (+)	MAPPER	mRatBN7.2
mRatBN7.2	18	16,905,110 - 16,905,393 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	17,807,783 - 17,808,013	NCBI	Rnor6.0
Rnor_6.0	18	17,807,783 - 17,808,184	NCBI	Rnor6.0
Rnor_5.0	18	17,560,168 - 17,560,569	UniSTS	Rnor5.0
Rnor_5.0	18	17,560,168 - 17,560,398	UniSTS	Rnor5.0
RGSC_v3.4	18	17,452,782 - 17,453,012	UniSTS	RGSC3.4
RGSC_v3.4	18	17,452,781 - 17,453,012	RGD	RGSC3.4
Celera	18	16,805,550 - 16,805,780	UniSTS
RGSC_v3.1	18	17,479,391 - 17,479,778	RGD
SHRSP x BN Map	18	9.25	RGD
SHRSP x BN Map	18	9.25	UniSTS
Cytogenetic Map	18	p12	UniSTS

MDB1448

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	16,786,660 - 16,786,824 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	17,688,885 - 17,689,047	NCBI	Rnor6.0
Rnor_5.0	18	17,442,505 - 17,442,667	UniSTS	Rnor5.0
RGSC_v3.4	18	17,346,847 - 17,347,009	UniSTS	RGSC3.4
Celera	18	16,688,989 - 16,689,151	UniSTS
Cytogenetic Map	18	p12	UniSTS

RH137760

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	16,963,057 - 16,963,212 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	17,865,972 - 17,866,126	NCBI	Rnor6.0
Rnor_5.0	18	17,617,811 - 17,617,965	UniSTS	Rnor5.0
RGSC_v3.4	18	17,511,539 - 17,511,693	UniSTS	RGSC3.4
Celera	18	16,863,351 - 16,863,505	UniSTS
RH 3.4 Map	18	193.6	UniSTS
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
13	7	47	161	58	57	30	32	30	6	212	106	7	144	58	77	27	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001401250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000061151 ⟹ ENSRNOP00000057864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	16,786,867 - 17,064,786 (-)	Ensembl
Rnor_6.0 Ensembl	18	17,698,038 - 17,716,880 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107952 ⟹ ENSRNOP00000077924

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	17,061,293 - 17,339,571 (-)	Ensembl
mRatBN7.2 Ensembl	18	16,786,867 - 17,064,786 (-)	Ensembl

RefSeq Acc Id:

NM_001401250 ⟹ NP_001388179

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,061,284 - 17,339,571 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,064,903 (-)	NCBI

RefSeq Acc Id:

XM_039096886 ⟹ XP_038952814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,339,712 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,065,039 (-)	NCBI

RefSeq Acc Id:

XM_039096888 ⟹ XP_038952816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,061,284 - 17,339,699 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,065,028 (-)	NCBI

RefSeq Acc Id:

XM_039096889 ⟹ XP_038952817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,061,284 - 17,339,699 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,065,027 (-)	NCBI

RefSeq Acc Id:

XM_039096890 ⟹ XP_038952818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,339,709 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,065,034 (-)	NCBI

RefSeq Acc Id:

XM_039096891 ⟹ XP_038952819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,339,707 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,065,033 (-)	NCBI

RefSeq Acc Id:

XM_039096892 ⟹ XP_038952820

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,061,284 - 17,339,699 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,065,024 (-)	NCBI

RefSeq Acc Id:

XM_039096893 ⟹ XP_038952821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,061,284 - 17,339,720 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,065,023 (-)	NCBI

RefSeq Acc Id:

XM_039096894 ⟹ XP_038952822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,339,707 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,065,033 (-)	NCBI

RefSeq Acc Id:

XM_039096895 ⟹ XP_038952823

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,061,284 - 17,339,747 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,065,024 (-)	NCBI

RefSeq Acc Id:

XM_039096896 ⟹ XP_038952824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,061,284 - 17,339,699 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,065,023 (-)	NCBI

RefSeq Acc Id:

XM_039096913 ⟹ XP_038952841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,061,284 - 17,339,699 (-)	NCBI
mRatBN7.2	18	16,786,578 - 17,065,027 (-)	NCBI

RefSeq Acc Id:

XM_063277389 ⟹ XP_063133459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,339,710 (-)	NCBI

RefSeq Acc Id:

XM_063277390 ⟹ XP_063133460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,339,711 (-)	NCBI

RefSeq Acc Id:

XM_063277391 ⟹ XP_063133461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,339,747 (-)	NCBI

RefSeq Acc Id:

XM_063277392 ⟹ XP_063133462

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,339,724 (-)	NCBI

RefSeq Acc Id:

XM_063277393 ⟹ XP_063133463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,339,718 (-)	NCBI

RefSeq Acc Id:

XM_063277394 ⟹ XP_063133464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277395 ⟹ XP_063133465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277396 ⟹ XP_063133466

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277397 ⟹ XP_063133467

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277398 ⟹ XP_063133468

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277399 ⟹ XP_063133469

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277400 ⟹ XP_063133470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277402 ⟹ XP_063133472

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277403 ⟹ XP_063133473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277404 ⟹ XP_063133474

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277405 ⟹ XP_063133475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,707 (-)	NCBI

RefSeq Acc Id:

XM_063277406 ⟹ XP_063133476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277408 ⟹ XP_063133478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277409 ⟹ XP_063133479

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277410 ⟹ XP_063133480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277411 ⟹ XP_063133481

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277412 ⟹ XP_063133482

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,264,736 (-)	NCBI

RefSeq Acc Id:

XM_063277413 ⟹ XP_063133483

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,264,929 (-)	NCBI

RefSeq Acc Id:

XM_063277414 ⟹ XP_063133484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,063,108 - 17,264,736 (-)	NCBI

RefSeq Acc Id:

XM_063277415 ⟹ XP_063133485

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,065,376 - 17,339,699 (-)	NCBI

RefSeq Acc Id:

XM_063277416 ⟹ XP_063133486

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,061,284 - 17,264,730 (-)	NCBI

RefSeq Acc Id:

XM_063277417 ⟹ XP_063133487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	17,061,284 - 17,339,699 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001388179	(Get FASTA)	NCBI Sequence Viewer
	XP_038952814	(Get FASTA)	NCBI Sequence Viewer
	XP_038952816	(Get FASTA)	NCBI Sequence Viewer
	XP_038952817	(Get FASTA)	NCBI Sequence Viewer
	XP_038952818	(Get FASTA)	NCBI Sequence Viewer
	XP_038952819	(Get FASTA)	NCBI Sequence Viewer
	XP_038952820	(Get FASTA)	NCBI Sequence Viewer
	XP_038952821	(Get FASTA)	NCBI Sequence Viewer
	XP_038952822	(Get FASTA)	NCBI Sequence Viewer
	XP_038952823	(Get FASTA)	NCBI Sequence Viewer
	XP_038952824	(Get FASTA)	NCBI Sequence Viewer
	XP_038952841	(Get FASTA)	NCBI Sequence Viewer
	XP_063133459	(Get FASTA)	NCBI Sequence Viewer
	XP_063133460	(Get FASTA)	NCBI Sequence Viewer
	XP_063133461	(Get FASTA)	NCBI Sequence Viewer
	XP_063133462	(Get FASTA)	NCBI Sequence Viewer
	XP_063133463	(Get FASTA)	NCBI Sequence Viewer
	XP_063133464	(Get FASTA)	NCBI Sequence Viewer
	XP_063133465	(Get FASTA)	NCBI Sequence Viewer
	XP_063133466	(Get FASTA)	NCBI Sequence Viewer
	XP_063133467	(Get FASTA)	NCBI Sequence Viewer
	XP_063133468	(Get FASTA)	NCBI Sequence Viewer
	XP_063133469	(Get FASTA)	NCBI Sequence Viewer
	XP_063133470	(Get FASTA)	NCBI Sequence Viewer
	XP_063133472	(Get FASTA)	NCBI Sequence Viewer
	XP_063133473	(Get FASTA)	NCBI Sequence Viewer
	XP_063133474	(Get FASTA)	NCBI Sequence Viewer
	XP_063133475	(Get FASTA)	NCBI Sequence Viewer
	XP_063133476	(Get FASTA)	NCBI Sequence Viewer
	XP_063133478	(Get FASTA)	NCBI Sequence Viewer
	XP_063133479	(Get FASTA)	NCBI Sequence Viewer
	XP_063133480	(Get FASTA)	NCBI Sequence Viewer
	XP_063133481	(Get FASTA)	NCBI Sequence Viewer
	XP_063133482	(Get FASTA)	NCBI Sequence Viewer
	XP_063133483	(Get FASTA)	NCBI Sequence Viewer
	XP_063133484	(Get FASTA)	NCBI Sequence Viewer
	XP_063133485	(Get FASTA)	NCBI Sequence Viewer
	XP_063133486	(Get FASTA)	NCBI Sequence Viewer
	XP_063133487	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76148	(Get FASTA)	NCBI Sequence Viewer
	EDL76149	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000077924
	ENSRNOP00000077924.1

Ensembl Acc Id:

ENSRNOP00000057864 ⟸ ENSRNOT00000061151

RefSeq Acc Id:	XP_038952814 ⟸ XM_039096886
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038952818 ⟸ XM_039096890
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038952822 ⟸ XM_039096894
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038952819 ⟸ XM_039096891
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038952816 ⟸ XM_039096888
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038952841 ⟸ XM_039096913
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038952817 ⟸ XM_039096889
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038952823 ⟸ XM_039096895
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_038952820 ⟸ XM_039096892
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038952824 ⟸ XM_039096896
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_038952821 ⟸ XM_039096893
- Peptide Label:	isoform X13

Ensembl Acc Id:

ENSRNOP00000077924 ⟸ ENSRNOT00000107952

RefSeq Acc Id:	NP_001388179 ⟸ NM_001401250
- UniProtKB:	A0A8I5ZKE7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133487 ⟸ XM_063277417
- Peptide Label:	isoform X37

RefSeq Acc Id:	XP_063133486 ⟸ XM_063277416
- Peptide Label:	isoform X36

RefSeq Acc Id:	XP_063133461 ⟸ XM_063277391
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063133462 ⟸ XM_063277392
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063133463 ⟸ XM_063277393
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063133460 ⟸ XM_063277390
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063133459 ⟸ XM_063277389
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063133483 ⟸ XM_063277413
- Peptide Label:	isoform X33

RefSeq Acc Id:	XP_063133484 ⟸ XM_063277414
- Peptide Label:	isoform X34

RefSeq Acc Id:	XP_063133482 ⟸ XM_063277412
- Peptide Label:	isoform X33

RefSeq Acc Id:	XP_063133475 ⟸ XM_063277405
- Peptide Label:	isoform X27

RefSeq Acc Id:	XP_063133481 ⟸ XM_063277411
- Peptide Label:	isoform X32

RefSeq Acc Id:	XP_063133474 ⟸ XM_063277404
- Peptide Label:	isoform X26

RefSeq Acc Id:	XP_063133469 ⟸ XM_063277399
- Peptide Label:	isoform X22

RefSeq Acc Id:	XP_063133480 ⟸ XM_063277410
- Peptide Label:	isoform X31

RefSeq Acc Id:	XP_063133473 ⟸ XM_063277403
- Peptide Label:	isoform X25

RefSeq Acc Id:	XP_063133468 ⟸ XM_063277398
- Peptide Label:	isoform X21

RefSeq Acc Id:	XP_063133479 ⟸ XM_063277409
- Peptide Label:	isoform X30

RefSeq Acc Id:	XP_063133472 ⟸ XM_063277402
- Peptide Label:	isoform X24

RefSeq Acc Id:	XP_063133467 ⟸ XM_063277397
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_063133465 ⟸ XM_063277395
- Peptide Label:	isoform X18

RefSeq Acc Id:	XP_063133485 ⟸ XM_063277415
- Peptide Label:	isoform X35

RefSeq Acc Id:	XP_063133478 ⟸ XM_063277408
- Peptide Label:	isoform X29

RefSeq Acc Id:	XP_063133476 ⟸ XM_063277406
- Peptide Label:	isoform X28

RefSeq Acc Id:	XP_063133470 ⟸ XM_063277400
- Peptide Label:	isoform X23
- UniProtKB:	A0A8I5ZKE7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133466 ⟸ XM_063277396
- Peptide Label:	isoform X19

RefSeq Acc Id:	XP_063133464 ⟸ XM_063277394
- Peptide Label:	isoform X17

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M6I9-F1-model_v2	AlphaFold	F1M6I9	1-329	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307630	AgrOrtholog
BioCyc Gene	G2FUF-8135	BioCyc
Ensembl Genes	ENSRNOG00000014503	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000107952	ENTREZGENE
	ENSRNOT00000107952.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	CELF3/4/5/6_RRM1	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
NCBI Gene	307540	ENTREZGENE
PANTHER	RNA BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PhenoGen	Celf4	PhenoGen
PROSITE	RRM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014503	RatGTEx
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I5ZKE7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-28	Celf4	CUGBP, Elav-like family member 4	Brunol4	bruno-like 4, RNA binding protein (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Brunol4	bruno-like 4, RNA binding protein (Drosophila)	Brunol4_predicted	bruno-like 4, RNA binding protein (Drosophila) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Brunol4_predicted	bruno-like 4, RNA binding protein (Drosophila) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar