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Gene: Csgalnact1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1) Rattus norvegicus

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Symbol:

Csgalnact1

Name:

chondroitin sulfate N-acetylgalactosaminyltransferase 1

RGD ID:

1307618

Description:

Predicted to enable hexosyltransferase activity. Predicted to be involved in UDP-N-acetylgalactosamine metabolic process; UDP-glucuronate metabolic process; and chondroitin sulfate proteoglycan biosynthetic process. Predicted to act upstream of or within chondroitin sulfate proteoglycan metabolic process; extracellular matrix organization; and skeletal system development. Predicted to be located in Golgi cisterna membrane. Predicted to be active in Golgi apparatus. Orthologous to human CSGALNACT1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1); PARTICIPATES IN chondroitin sulfate biosynthetic pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Chgn; chondroitin beta1,4 N-acetylgalactosaminyltransferase; LOC306375; RGD1307618; similar to chondroitin beta1,4 N-acetylgalactosaminyltransferase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	25,761,946 - 26,097,306 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	26,002,530 - 26,096,065 (+)	Ensembl				GRCr8
mRatBN7.2	16	20,995,210 - 21,330,586 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	21,235,784 - 21,330,319 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	24,611,968 - 24,709,528 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	28,042,972 - 28,141,568 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	23,977,291 - 24,074,861 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	22,704,318 - 23,075,071 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	22,979,444 - 23,074,798 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	22,733,680 - 22,963,531 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	22,852,516 - 22,947,139 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	21,395,359 - 21,488,688 (+)	NCBI		Celera
RGSC_v3.1	16	22,852,484 - 22,946,543 (+)	NCBI
Cytogenetic Map	16	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Desbuquois dysplasia (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Larsen syndrome (ISO)

SKELETAL DYSPLASIA, MILD, WITH JOINT LAXITY AND ADVANCED BONE AGE (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',5,5'-tetrabromobisphenol A (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbamazepine (ISO)

carmustine (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

diethylstilbestrol (EXP)

dioxygen (ISO)

diquat (ISO)

diuron (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

enzalutamide (ISO)

ethanol (ISO)

etoposide (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

hydroquinone (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

MeIQx (ISO)

niclosamide (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

pyrvinium (ISO)

quercetin (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

S-nitrosoglutathione (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium acetate trihydrate (ISO)

sodium arsenite (ISO)

Soman (EXP)

succimer (ISO)

temozolomide (ISO)

testosterone (EXP,ISO)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

zidovudine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cartilage development (ISO)

chondroitin sulfate proteoglycan biosynthetic process (IEA,ISO)

chondroitin sulfate proteoglycan metabolic process (ISO)

endochondral ossification (ISO)

extracellular matrix organization (ISO)

UDP-glucuronate metabolic process (ISO)

UDP-N-acetylgalactosamine metabolic process (ISO)

Cellular Component

Golgi apparatus (IEA,ISO)

Golgi cisterna membrane (IEA)

Molecular Function

acetylgalactosaminyltransferase activity (IEA,ISO)

glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity (IEA,ISO)

glucuronosyltransferase activity (ISO)

glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity (ISO)

peptidoglycan glycosyltransferase activity (ISO)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

chondroitin sulfate biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11514575	PMID:12163485	PMID:12477932	PMID:20812917	PMID:21148564

Genomics

Comparative Map Data

Csgalnact1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	25,761,946 - 26,097,306 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	26,002,530 - 26,096,065 (+)	Ensembl				GRCr8
mRatBN7.2	16	20,995,210 - 21,330,586 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	21,235,784 - 21,330,319 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	24,611,968 - 24,709,528 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	28,042,972 - 28,141,568 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	23,977,291 - 24,074,861 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	22,704,318 - 23,075,071 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	22,979,444 - 23,074,798 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	22,733,680 - 22,963,531 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	22,852,516 - 22,947,139 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	21,395,359 - 21,488,688 (+)	NCBI		Celera
RGSC_v3.1	16	22,852,484 - 22,946,543 (+)	NCBI
Cytogenetic Map	16	p14	NCBI

CSGALNACT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	19,404,161 - 19,757,908 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	19,404,156 - 19,758,029 (-)	Ensembl			hg38	GRCh38
GRCh37	8	19,261,672 - 19,615,419 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	19,305,952 - 19,584,374 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	18,225,010 - 18,503,692 (-)	NCBI		Celera
Cytogenetic Map	8	p21.3	NCBI
HuRef	8	17,801,989 - 18,080,455 (-)	NCBI		HuRef
CHM1_1	8	19,463,117 - 19,741,804 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	19,669,045 - 20,022,919 (-)	NCBI		T2T-CHM13v2.0

Csgalnact1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	68,809,433 - 69,188,270 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	68,809,433 - 69,187,798 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	68,356,781 - 68,735,621 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	68,356,781 - 68,735,146 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	70,880,682 - 71,259,041 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	71,285,783 - 71,664,123 (-)	NCBI		MGSCv36	mm8
Celera	8	70,901,764 - 71,270,170 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	33.88	NCBI

Csgalnact1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	43,178,520 - 43,478,885 (-)	Ensembl
ChiLan1.0	NW_004955403	43,178,520 - 43,347,121 (-)	NCBI	ChiLan1.0	ChiLan1.0

CSGALNACT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	37,883,225 - 38,236,716 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	13,608,924 - 13,962,206 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	18,626,998 - 18,980,416 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	15,576,416 - 15,929,342 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	15,576,416 - 15,904,123 (-)	Ensembl			panPan2	panpan1.1

CSGALNACT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	22,219,324 - 22,546,501 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	22,219,861 - 22,392,937 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	22,724,714 - 23,051,863 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	23,960,246 - 24,287,450 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	23,961,632 - 24,286,927 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	22,317,927 - 22,427,544 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	22,903,836 - 23,231,159 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	22,955,384 - 23,282,687 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Csgalnact1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	14,762,965 - 14,931,054 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936555	3,637,630 - 3,807,488 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936555	3,639,459 - 3,807,483 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSGALNACT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	12,428,893 - 12,498,585 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	12,145,141 - 12,498,777 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	10,059,885 - 10,154,331 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSGALNACT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	17,494,312 - 17,851,497 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	17,494,187 - 17,695,037 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666052	24,650,059 - 24,756,656 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Csgalnact1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	15,200,713 - 15,367,236 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624758	15,200,726 - 15,517,146 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Csgalnact1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	20,694,516 - 21,027,849 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Csgalnact1
2487 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	180
Count of miRNA genes:	126
Interacting mature miRNAs:	158
Transcripts:	ENSRNOT00000017822
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549842	Bp248	Blood pressure QTL 248		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	387123	45387123	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33425095	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39568015	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4234212	53708481	Rat
631517	Scl9	Serum cholesterol level QTL 9	3.3		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	16	15748006	25801629	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	4744222	49744222	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	1	26734272	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26734272	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	4354822	49354822	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	387123	45387123	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4234212	49757901	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4234212	66955197	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	16278184	27244292	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39568015	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	839086	66195506	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3386790	49757901	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3386790	26128267	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	839086	66195506	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	839086	66195506	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26734272	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17730818	72536785	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	839086	52786090	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	15905802	60905802	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	839086	66195506	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	3301683	48301683	Rat

Markers in Region

D16Rat120

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	25,871,839 - 25,872,070 (+)	Marker Load Pipeline
mRatBN7.2	16	21,105,107 - 21,105,338 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	22,848,249 - 22,848,479	NCBI	Rnor6.0
Rnor_5.0	16	22,737,302 - 22,737,532	UniSTS	Rnor5.0
RGSC_v3.4	16	22,742,152 - 22,742,383	RGD	RGSC3.4
RGSC_v3.4	16	22,742,153 - 22,742,383	UniSTS	RGSC3.4
Celera	16	21,264,603 - 21,264,833	UniSTS
RGSC_v3.1	16	22,741,905 - 22,742,400	RGD
SHRSP x BN Map	16	9.04	UniSTS
SHRSP x BN Map	16	9.04	RGD
Cytogenetic Map	16	p14	UniSTS

D16Got23

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	21,204,330 - 21,204,558 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	22,948,046 - 22,948,273	NCBI	Rnor6.0
Rnor_5.0	16	22,836,759 - 22,836,986	UniSTS	Rnor5.0
RGSC_v3.4	16	22,820,199 - 22,820,427	RGD	RGSC3.4
RGSC_v3.4	16	22,820,200 - 22,820,427	UniSTS	RGSC3.4
Celera	16	21,363,702 - 21,363,929	UniSTS
RGSC_v3.1	16	22,820,198 - 22,820,425	RGD
RH 3.4 Map	16	257.1	UniSTS
RH 3.4 Map	16	257.1	RGD
RH 2.0 Map	16	298.2	RGD
Cytogenetic Map	16	p14	UniSTS

RH129371

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	21,330,363 - 21,330,546 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	23,074,843 - 23,075,025	NCBI	Rnor6.0
Rnor_5.0	16	22,963,303 - 22,963,485	UniSTS	Rnor5.0
RGSC_v3.4	16	22,947,901 - 22,948,083	UniSTS	RGSC3.4
Celera	16	21,489,450 - 21,489,632	UniSTS
RH 3.4 Map	16	256.66	UniSTS
Cytogenetic Map	16	p14	UniSTS

BQ190966

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	21,322,966 - 21,323,158 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	23,067,443 - 23,067,634	NCBI	Rnor6.0
Rnor_5.0	16	22,955,903 - 22,956,094	UniSTS	Rnor5.0
RGSC_v3.4	16	22,939,631 - 22,939,822	UniSTS	RGSC3.4
Celera	16	21,481,966 - 21,482,157	UniSTS
RH 3.4 Map	16	254.77	UniSTS
Cytogenetic Map	16	p14	UniSTS

UniSTS:532267

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	21,312,892 - 21,313,057 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	23,057,358 - 23,057,522	NCBI	Rnor6.0
Rnor_5.0	16	22,945,976 - 22,946,140	UniSTS	Rnor5.0
Celera	16	21,471,806 - 21,471,970	UniSTS
Cytogenetic Map	16	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	355	192	11	141	80	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017822 ⟹ ENSRNOP00000017822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	21,235,784 - 21,330,319 (+)	Ensembl
Rnor_6.0 Ensembl	16	22,979,444 - 23,074,798 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120590 ⟹ ENSRNOP00000098230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	26,002,530 - 26,096,065 (+)	Ensembl

RefSeq Acc Id:

NM_001107309 ⟹ NP_001100779

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	26,002,729 - 26,096,316 (+)	NCBI
mRatBN7.2	16	21,236,008 - 21,329,602 (+)	NCBI
Rnor_6.0	16	22,979,668 - 23,074,078 (+)	NCBI
Rnor_5.0	16	22,733,680 - 22,963,531 (+)	NCBI
RGSC_v3.4	16	22,852,516 - 22,947,139 (+)	RGD
Celera	16	21,395,359 - 21,488,688 (+)	RGD

Sequence:

show sequence

ATGGTCCGACGCGGGCTGGTGGGGTGGATTTCCCGGGTAGTGATTCTGCTGGTGCTGCTCTGTT
GTGCCATCTCTGTTCTCTACATGTTAGCCTGCACCCCAAAAGGCGACCAAGAGCAGCTGGGACT
GCCACGGGCCAACGGCCCCACAGGCAAAGATGGCTACCAAGCGGTGCTACAGGAGCGTGAGGAA
CAGCATCGCAACTATGTGAATAGTCTTAAGCGACAGATCGCGCAGCTCAAGGATGAACTGCAGG
CACGCAGTGAGCAGCTCCGCAGTGGGCAGGACCAGGCCAGCGATGCCACCAGCCTGCGGTCAGG
CTGGGACCCTGAACCCAAAGCCCAGGCTGATATACTGGCCTTCCTGCGTGGGCAGGTGGACAAG
GCTGAGGTCCACGCCGGTGTCAAGCTGGCCACCGAATATGCTGCTGTGCCTTTTGATAGCTTCA
CTCTGCAGAAAGTATACCAGCTGGAGACTGGTCTGACCCGCCACCCTGAGGAGAAACCAGTGAG
GAAGGACAAGCGAGATGAGCTAGTGGAAGCTATCGAATCAGCCCTGGAGAGTCTAAACAGCCCT
GTGGAAAGCAGCCCACACCAGCGCCCTTACACGGCTGCAGACTTCATAGAAGGGATCTACCGAA
CAGAAAGGGATAAAGGCACTTTGTATGAGCTGACCTTCAAAGGGGACCATAAGCATGAATTCCA
ACGACTTGTCCTATTTCGACCTTTTGGCCCCATCATGAAAGTGAAGAAGGAAAAGCTCAACATG
GCCAACACACTTATCAACGTTATCGTGCCCCTAGCGAGGAGGGTGGACAAGTTCCGGCACTTCA
TGCAGAACTTCAGGGAGATGTGCATCCAACAAGATGGGAGAGTTCATCTTACCGTTGTTTATTT
TGGGAAAGAAGAAATGAATGAAGTCAAAGGAATACTTGAAAACACTTCCAAGGCTGCCAATTTT
AGAAACTTCACCTTCATCCAGCTGAATGGAGAGTTCTCCCGGGGAAAGGGACTGGATGTTGGAG
CCCGCTTCTGGAAGGGAAGTAATGTCGTGCTCTTTTTCTGTGATGTGGACATCTACTTCACCTC
TGAGTTCCTCAACACATGTAGGCTGAACACACAGCCAGGGAAGAAGGTATTTTATCCGGTTCTT
TTCAGTCAGTATAACCCTGGCATAATCTACGGCCATCATGATGCTGTCCCTGCCCTAGAACAGC
AGCTGGTCATAAAGAAGGAAACAGGATTTTGGAGGGACTTTGGATTCGGAATGACTTGTCAGTA
CCGGTCAGACTTCATCAACATAGGTGGATTTGACCTGGACATCAAAGGCTGGGGCGGTGAAGAT
GTGCACCTGTACCGGAAATATCTCCATAGCAACCTCATAGTGATACGCACGCCTGTACGGGGAC
TTTTCCACCTTTGGCATGAGAAGCACTGTATGGATGAACTGACCCCTGAGCAGTACAGGATGTG
CATGCAATCAAAGGCTATGAATGAAGCATCCCACGGGCAGCTGGGAATGCTTGTCTTCCGGCAT
GAAATAGAGGCTCACCTTCGCAAACAGAAGCTCAAAGCCAGCAGTAAAAAGACATGACCTCCTA
GGTAAAGATTAGCCAAGACGTTTAAATTTTGTGCCTTTGGCAGTTACTGAAGAAGTAGATGCAA
CAAGGTATAGACTTCCACAAAGGGCAACAGAGAATCTGACTGATGAGTGACAGATGAATGAAGA
GTCTCGGGTTTCTGTTGGCTCTGTGTATGCTGGTGACTCTGACTGTGTTTACAGCCAAATGAGC
TCTCTGGTCCCTGCTCCCTGAAATAGTCACAACCGGTTTCAGAAAACCAGAAGGAGCTGCAAGC
CCACTGACTTCTCTTCTTTGGATTGGTTACATCAGAGGGCTTTGGTACTACTAGGACTACCAAA
GGCTCAGATGGAGCTCTCGGACGGAGCAGAGGACCTGTGTGAAAAGTGGAGCTCTGACATTAGT
GTCCTCCACCAGACCGTGAGCAAAATCAAAGGGACCTGGAAACAAACCATCCAAACTGTCATTT
CCCTAGTATTAACTGAAAAACAAACAAACAAACAAACAAAAACCCTAAAAAACAAAAAAAAGAC
AAAAACAAAAACAAAAAACAAAGCCAACAACAACTACAACAAAAACCCCTCTCTTTCCCATTAT
TGTTTAGTCATCTCTGTTCTAAAAATGCACTTTTTTTGCTTCTGAGCATTATGCTTATTTAATT
ACCCATTTCCAAGCCTTAGTAGGAGTACATTGTAGTACACACATTTTTATGATTTTTTTAAAGA
TTTGTTTTTA

hide sequence

RefSeq Acc Id:

XM_006253027 ⟹ XP_006253089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	25,914,701 - 26,097,306 (+)	NCBI
mRatBN7.2	16	21,148,032 - 21,330,586 (+)	NCBI
Rnor_6.0	16	22,891,174 - 23,075,071 (+)	NCBI
Rnor_5.0	16	22,733,680 - 22,963,531 (+)	NCBI

Sequence:

show sequence

ATCAACAGCACCCAGTCTGTCCTCTCCAGCGGCTGTAGCAGGCGCCAGTCCTGCCAGCACAGCG
TTCCCTTCTGGGCTGCAGCAGCAGACTGGCTTAGTGCTTGGTGGCGCTGAGCTGAACACGGTGC
TAGCAGAAGGGGGCGGTACTTTCCCTCTGGACCCTGACTTGGAAGCCAAGTGCGACTCGAGCGC
AGTCACCGCCAGAAGCAGATGTGTGAGCGGAGCAGCTGTGCGCCTCTCTTTCTGCCGAGGATCC
CCCTCATCTTCAGCACATCAGGAAGACTATGATGGAAACAAAAGAAAGAACTTGGAGGTTCCAC
TTAACTGATTGTTTCTGCCTAGAGGATCTTCTCTTGGAAGCAGGAGAGCCTTCTCATGTAATGG
CTGACTTCCAAAGACAGGCTATGTTCTAGAAGGAAATGGATGGAATCAGTTCAGGGGACTTCAG
CCGCACTGTGGTCTAACCAGAAAAGCCCGTGTTGGGGGCCCTCCTGGTGCCCTGGGATGTTGCA
TACTCTGGACCTGGATGCATGGCCCGCACCTGAGTGAGGATGGTCCGACGCGGGCTGGTGGGGT
GGATTTCCCGGGTAGTGATTCTGCTGGTGCTGCTCTGTTGTGCCATCTCTGTTCTCTACATGTT
AGCCTGCACCCCAAAAGGCGACCAAGAGCAGCTGGGACTGCCACGGGCCAACGGCCCCACAGGC
AAAGATGGCTACCAAGCGGTGCTACAGGAGCGTGAGGAACAGCATCGCAACTATGTGAATAGTC
TTAAGCGACAGATCGCGCAGCTCAAGGATGAACTGCAGGCACGCAGTGAGCAGCTCCGCAGTGG
GCAGGACCAGGCCAGCGATGCCACCAGCCTGCGGTCAGGCTGGGACCCTGAACCCAAAGCCCAG
GCTGATATACTGGCCTTCCTGCGTGGGCAGGTGGACAAGGCTGAGGTCCACGCCGGTGTCAAGC
TGGCCACCGAATATGCTGCTGTGCCTTTTGATAGCTTCACTCTGCAGAAAGTATACCAGCTGGA
GACTGGTCTGACCCGCCACCCTGAGGAGAAACCAGTGAGGAAGGACAAGCGAGATGAGCTAGTG
GAAGCTATCGAATCAGCCCTGGAGAGTCTAAACAGCCCTGTGGAAAGCAGCCCACACCAGCGCC
CTTACACGGCTGCAGACTTCATAGAAGGGATCTACCGAACAGAAAGGGATAAAGGCACTTTGTA
TGAGCTGACCTTCAAAGGGGACCATAAGCATGAATTCCAACGACTTGTCCTATTTCGACCTTTT
GGCCCCATCATGAAAGTGAAGAAGGAAAAGCTCAACATGGCCAACACACTTATCAACGTTATCG
TGCCCCTAGCGAGGAGGGTGGACAAGTTCCGGCACTTCATGCAGAACTTCAGGGAGATGTGCAT
CCAACAAGATGGGAGAGTTCATCTTACCGTTGTTTATTTTGGGAAAGAAGAAATGAATGAAGTC
AAAGGAATACTTGAAAACACTTCCAAGGCTGCCAATTTTAGAAACTTCACCTTCATCCAGCTGA
ATGGAGAGTTCTCCCGGGGAAAGGGACTGGATGTTGGAGCCCGCTTCTGGAAGGGAAGTAATGT
CGTGCTCTTTTTCTGTGATGTGGACATCTACTTCACCTCTGAGTTCCTCAACACATGTAGGCTG
AACACACAGCCAGGGAAGAAGGTATTTTATCCGGTTCTTTTCAGTCAGTATAACCCTGGCATAA
TCTACGGCCATCATGATGCTGTCCCTGCCCTAGAACAGCAGCTGGTCATAAAGAAGGAAACAGG
ATTTTGGAGGGACTTTGGATTCGGAATGACTTGTCAGTACCGGTCAGACTTCATCAACATAGGT
GGATTTGACCTGGACATCAAAGGCTGGGGCGGTGAAGATGTGCACCTGTACCGGAAATATCTCC
ATAGCAACCTCATAGTGATACGCACGCCTGTACGGGGACTTTTCCACCTTTGGCATGAGAAGCA
CTGTATGGATGAACTGACCCCTGAGCAGTACAGGATGTGCATGCAATCAAAGGCTATGAATGAA
GCATCCCACGGGCAGCTGGGAATGCTTGTCTTCCGGCATGAAATAGAGGCTCACCTTCGCAAAC
AGAAGCTCAAAGCCAGCAGTAAAAAGACATGACCTCCCAGGTAAAGATTAGCCAAGACGTTTAA
ATTTTGTGCCTTTGGCAGTTACTGAAGAAGTAGATGCAACAAGGTATAGACTTCCACAAAGGGC
AACAGAGAATCTGACTGATGAGTGACAGATGAATGAAGAGTCTCGGGTTTCTGTTGGCTCTGTG
TATGCTGGTGACTCTGACTGTGTTTACAGCCAAATGAGCTCTCTGGTCCCTGCTCCCTGAAATA
GTCACAACCGGTTTCAGAAAACCAGAAGGAGCTGCAAGCCCACTGACTTCTCTTCTTTGGATTG
GTTACATCAGAGGGCTTTGGTACTACTAGGACTACCAAAGGCTCAGATGGAGCTCTCGGACGGA
GCAGAGGACCTGTGTGAAAAGTGGAGCTCTGACATTAGTGTCCTCCACCAGACCGTGAGCAAAA
TCAAAGGGACCTGGAAACAAACCATCCAAACTGTCATTTCCCTAGTATTAACTGAAAAACAAAC
AAACAAACAAACAAAAACCCTAAAAAACAAAAAAAAGACAAAAACAAAAACAAAAAACAAAGCC
AACAACAACTACAACAAAAACCCCTCTCTTTCCCATTATTGTTTAGTCATCTCTGTTCTAAAAA
TGCACTTTTTTTGCTTCTGAGCATTATGCTTATTTAATTACCCATTTCCAAGCCTTAGTAGGAG
TACATTGTAGTACACACATTTTTATGATTTTTTTAAAGATTTGTTTTTATGTTTTTGCTGATTT
GTTTACTTGAGACAGTCTTGACACAGAGCCCGAGATAACTTGAAATCCTGATCCTCCTGTCTCC
GAAGCCTGAGTGCTGAGATTACAGGTAGCTAGAAGATACGTGCAGAGGCGTGGAGTGAGGAGCT
CCAGTTGCAGGCATGTGGAGCTGATCCAAGGACTTGCCAGTCTCCGACCACAAGAAGGCTACAT
GTGGGGCTGCAGAGAGAAAGGTATCTACAAACTAAGACTGTCGGAAGAGGAGCAATCAAACACT
GGAAAAAGAAAAAGATACTTTTCACAAAGAAAGGACACTAAGAAGACCTTCGTGTATTTACTAG
AGAATATAATNNTTTCTCTTCTGGAGAAATGGGACCACTTTCTTACCTGTTTGAATAAACCAAA
GTTATGAACCAAATGATCACTTTTCAAAACAGGGTGCTCTTCTTGGTCTCTGGTTTGCATAAAG
AAGAAACTGCAGGAAATATATATATGTATATATATATATATATATATATATATATATATATATA
TATATATTTTGAAAGACAAATCCATTAACCCAGTGAGGTGGAAGATTCTGCTCCATTTCCATTC
ACTCCTGGCTAGGTGGAAGCAACTTATTTTTAAAATAAGCAATGTTACCTGATTGCCAAGACGC
TTCTGAAGCATTTTCTTACAACTCCAAATTTGTTTTTTTAAAAAAAATAAATCTGATTAACATT
GAGTGGTTTCTACATCCATGTGCAAATTATTTATTTATTAGCCAGCACCAGATGCATGAGCTAA
TTACCTCTCCTGTCTCTGTGCCTTCTGTTTGCCCACAGTGAACTCATTGTTTAAATGCTTCAAG
AACACTCAAGCTGTGTGTTTAAAAAAAAAAAAAGGATTGTATTGATTTGTACTGGTAGTTTATA
AAATTTAATTAAAACACAAGACATGAATGAAAGGTGGCATTGCACAGCTAATAAAATTTGTGAA
TTTGATTTCTTTCCATAA

hide sequence

RefSeq Acc Id:

XM_006253028 ⟹ XP_006253090

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	25,865,180 - 26,097,306 (+)	NCBI
mRatBN7.2	16	21,100,081 - 21,330,586 (+)	NCBI
Rnor_6.0	16	22,842,529 - 23,075,071 (+)	NCBI
Rnor_5.0	16	22,733,680 - 22,963,531 (+)	NCBI

Sequence:

show sequence

GTATATATATGCATGTATATATACTTCTTATGCTTCTGTGGATTCTGTATACAGTGGATTGTGT
TTTCCATTTTCTAGTCCCTGAAAAACAGAGGGCTTAGTTATATGAGTAAATACAGAAATAAAAC
TATATTTCTTTAAAAATGCATAATTCATGCAGAGCACATTTGCACTGTCCTTCATAACATTTTA
TGCAAGCAAGGAATGAGAAATGAGTGTATTATTTATTTGGGGGCAGCTTATACTTGTGACAGAT
TTCCAAAGATTTAGGTAAAAGTAAGACTTCCCCCTCTACCTTCTATCCATACTGTTCTGCCTCC
TCTCTTTCATGGTGGCCTTCCTTTCTGTCTTCCTCTCTTGCACTTCTTCCCATGCTAAGGATCT
ACATCAGGATCTCCTGCAAGTCAGGCAATCACCAAGCTGCATCCCAGTCCTGCACTAGAAAGTT
CTATGTAGTCAGTCCTGAGATGCTGGGCTCTGAGACTAGGCAAGAATTTCACCCCAGCCAGTGG
CCTTGTAGAGAAGCTACCAGACCTCACTGTGCCTCTGTTTTGTCACTGGAAAAATAGGAATATT
AGAGATGCCAAGAAGAACAAATTGGACAATTCCTGTGATGTGCTGAGCGTCAATTATGGACTTG
CAACACTTATGAAATACTAACTTCCTCCCTTATATAGGATGTTTCCTTACCTACTCATCATTTT
CTTACACAACACTAAGTTGTATGTGTTTAAATAGATGGCTTTTGGAAACGCAGCAAAATGAGAT
TTCTCACCTGAGCTCATGGGATTGCTGGTCTTATGGATCGAGCTGACTCATTTTTCTTTTTTGG
TTACCTACTATTCAGCTTTTTGGATGGATTTATCTATTTTTATGTATAAAATTTTTATATCTTT
GTTTAATTTATCTAATTATACTTTATATATATTTATCTAATTTATATAATCACATATCCAGCTT
CCAACTGATGGTCAGTCGGGCTGCTTCCACTCTTATTACCATATCATGAGACCCTGGAAAAAGG
TGTGAGCCCTTCCAGTGTAGATCCTGACGGGAAGTTTGTAGGCAGGAAGTCAAATAAATGTTCA
CAGCACAGGTTCTAGTTTTGACGAATGTTTATGAGTTGCTCTCCACAAGGCAAGGAACTCGGTC
TACAGAGTGTGAAAATGCTCATTTCCAAAGGTCATACTGCAACTTTAATTTTCAAAAATTCAGT
TTTTTCAGGCCTAATAATAACGATTTGGAAATTTGATCAAGGTTTCTAGGTTCCCTGGAATAGC
TAGTGGGTAGAGGGAGGGCAATGGTGCTTCCTCCTTAAGTGTTAGAAGGGACAACAGACTTCTA
TGGTGATTCCTATGAAATACACATACATTGTCCTTATGGGCACTGGCTGCCAGGGATTCCTGAG
CTATGGAAATAGAGCAAAGAGTTTGGGAAGAGAACATTAGCAACAGTGCTTTTCGTTTAGTTTG
CATCAGAGCCTGGCCTCTCTATGCCCCTTGAACTTGCCTTGGCTGAGCAGAGCTGTTTGTTGGA
CCAGTTTCTGAGAGAGCCTTTCTCATTCATCCACACAAATGTCCCATTGTACAGTTCTCCTTGC
TTCCCAAAATGACCATATAGCTTTTGTTTGGAGGTAGGTGGACAATTTTCTCTCTTTTCAGATA
TACAAAAAACAAAACAAAACAAAACAAAAAACCTCTCAAATAACTAAAAAAAAAAAAAAAGATA
TAATGTTGATTTCGGCATCCAGTATCTTAGAGTATATGACCTTCGTTAGTGCTTTTGGGTAGTC
TAAAATAGTTTTAACCCCTTCTTACATATTTTACAGTTTATAGCAAATTCACTATGTTTTACAG
AGTTCATGGTGCACTGCCTGCCCCCTGACACATAACTCTGGTCTCTGGAAGGAATTAGGATTTG
TAATGAAATCGACAGTTTCAGTCCACTTGGCAAGTGCTCACAGGCTGTATTTGCATATGCAAAC
AAGCTGAGGAATTGAAAAATGAAAAACCCAAAATTAGTATTCTACGAGGAACTAAACACTTGGA
CGCTTTGGGTCACTCACATTATTACAGAAATACTCGTTGGCTTTCCGCTGTGTTGATCATGATA
CACTGTCAAGGGTGAAAGGAGCTGGGTGGCTGAACCATCTGCACCTAGTAGGGACTGATGCTTC
AGAACACCCGGCCTATGAGGCTGAGCCTGGCTGCCTTGGACCTGCGAGTGGTGGCGCTGAGCTG
AACACGGTGCTAGCAGAAGGGGGCGGTACTTTCCCTCTGGACCCTGACTTGGAAGCCAAGTGCG
ACTCGAGCGCAGTCACCGCCAGAAGCAGATGTGTGAGCGGAGCAGCTGTGCGCCTCTCTTTCTG
CCGAGGATCCCCCTCATCTTCAGCACATCAGGAAGACTATGATGGAAACAAAAGAAAGAACTTG
GAGGTTCCACTTAACTGATTGTTTCTGCCTAGAGGATCTTCTCTTGGAAGCAGGAGAGCCTTCT
CATGTAATGGCTGACTTCCAAAGACAGGCTATGTTCTAGAAGGAAATGGATGGAATCAGTTCAG
GGGACTTCAGCCGCACTGTGGTCTAACCAGAAAAGCCCGTGTTGGGGGCCCTCCTGGTGCCCTG
GGATGTTGCATACTCTGGACCTGGATGCATGGCCCGCACCTGAGTGAGGATGGTCCGACGCGGG
CTGGTGGGGTGGATTTCCCGGGTAGTGATTCTGCTGGTGCTGCTCTGTTGTGCCATCTCTGTTC
TCTACATGTTAGCCTGCACCCCAAAAGGCGACCAAGAGCAGCTGGGACTGCCACGGGCCAACGG
CCCCACAGGCAAAGATGGCTACCAAGCGGTGCTACAGGAGCGTGAGGAACAGCATCGCAACTAT
GTGAATAGTCTTAAGCGACAGATCGCGCAGCTCAAGGATGAACTGCAGGCACGCAGTGAGCAGC
TCCGCAGTGGGCAGGACCAGGCCAGCGATGCCACCAGCCTGCGGTCAGGCTGGGACCCTGAACC
CAAAGCCCAGGCTGATATACTGGCCTTCCTGCGTGGGCAGGTGGACAAGGCTGAGGTCCACGCC
GGTGTCAAGCTGGCCACCGAATATGCTGCTGTGCCTTTTGATAGCTTCACTCTGCAGAAAGTAT
ACCAGCTGGAGACTGGTCTGACCCGCCACCCTGAGGAGAAACCAGTGAGGAAGGACAAGCGAGA
TGAGCTAGTGGAAGCTATCGAATCAGCCCTGGAGAGTCTAAACAGCCCTGTGGAAAGCAGCCCA
CACCAGCGCCCTTACACGGCTGCAGACTTCATAGAAGGGATCTACCGAACAGAAAGGGATAAAG
GCACTTTGTATGAGCTGACCTTCAAAGGGGACCATAAGCATGAATTCCAACGACTTGTCCTATT
TCGACCTTTTGGCCCCATCATGAAAGTGAAGAAGGAAAAGCTCAACATGGCCAACACACTTATC
AACGTTATCGTGCCCCTAGCGAGGAGGGTGGACAAGTTCCGGCACTTCATGCAGAACTTCAGGG
AGATGTGCATCCAACAAGATGGGAGAGTTCATCTTACCGTTGTTTATTTTGGGAAAGAAGAAAT
GAATGAAGTCAAAGGAATACTTGAAAACACTTCCAAGGCTGCCAATTTTAGAAACTTCACCTTC
ATCCAGCTGAATGGAGAGTTCTCCCGGGGAAAGGGACTGGATGTTGGAGCCCGCTTCTGGAAGG
GAAGTAATGTCGTGCTCTTTTTCTGTGATGTGGACATCTACTTCACCTCTGAGTTCCTCAACAC
ATGTAGGCTGAACACACAGCCAGGGAAGAAGGTATTTTATCCGGTTCTTTTCAGTCAGTATAAC
CCTGGCATAATCTACGGCCATCATGATGCTGTCCCTGCCCTAGAACAGCAGCTGGTCATAAAGA
AGGAAACAGGATTTTGGAGGGACTTTGGATTCGGAATGACTTGTCAGTACCGGTCAGACTTCAT
CAACATAGGTGGATTTGACCTGGACATCAAAGGCTGGGGCGGTGAAGATGTGCACCTGTACCGG
AAATATCTCCATAGCAACCTCATAGTGATACGCACGCCTGTACGGGGACTTTTCCACCTTTGGC
ATGAGAAGCACTGTATGGATGAACTGACCCCTGAGCAGTACAGGATGTGCATGCAATCAAAGGC
TATGAATGAAGCATCCCACGGGCAGCTGGGAATGCTTGTCTTCCGGCATGAAATAGAGGCTCAC
CTTCGCAAACAGAAGCTCAAAGCCAGCAGTAAAAAGACATGACCTCCCAGGTAAAGATTAGCCA
AGACGTTTAAATTTTGTGCCTTTGGCAGTTACTGAAGAAGTAGATGCAACAAGGTATAGACTTC
CACAAAGGGCAACAGAGAATCTGACTGATGAGTGACAGATGAATGAAGAGTCTCGGGTTTCTGT
TGGCTCTGTGTATGCTGGTGACTCTGACTGTGTTTACAGCCAAATGAGCTCTCTGGTCCCTGCT
CCCTGAAATAGTCACAACCGGTTTCAGAAAACCAGAAGGAGCTGCAAGCCCACTGACTTCTCTT
CTTTGGATTGGTTACATCAGAGGGCTTTGGTACTACTAGGACTACCAAAGGCTCAGATGGAGCT
CTCGGACGGAGCAGAGGACCTGTGTGAAAAGTGGAGCTCTGACATTAGTGTCCTCCACCAGACC
GTGAGCAAAATCAAAGGGACCTGGAAACAAACCATCCAAACTGTCATTTCCCTAGTATTAACTG
AAAAACAAACAAACAAACAAACAAAAACCCTAAAAAACAAAAAAAAGACAAAAACAAAAACAAA
AAACAAAGCCAACAACAACTACAACAAAAACCCCTCTCTTTCCCATTATTGTTTAGTCATCTCT
GTTCTAAAAATGCACTTTTTTTGCTTCTGAGCATTATGCTTATTTAATTACCCATTTCCAAGCC
TTAGTAGGAGTACATTGTAGTACACACATTTTTATGATTTTTTTAAAGATTTGTTTTTATGTTT
TTGCTGATTTGTTTACTTGAGACAGTCTTGACACAGAGCCCGAGATAACTTGAAATCCTGATCC
TCCTGTCTCCGAAGCCTGAGTGCTGAGATTACAGGTAGCTAGAAGATACGTGCAGAGGCGTGGA
GTGAGGAGCTCCAGTTGCAGGCATGTGGAGCTGATCCAAGGACTTGCCAGTCTCCGACCACAAG
AAGGCTACATGTGGGGCTGCAGAGAGAAAGGTATCTACAAACTAAGACTGTCGGAAGAGGAGCA
ATCAAACACTGGAAAAAGAAAAAGATACTTTTCACAAAGAAAGGACACTAAGAAGACCTTCGTG
TATTTACTAGAGAATATAATNNTTTCTCTTCTGGAGAAATGGGACCACTTTCTTACCTGTTTGA
ATAAACCAAAGTTATGAACCAAATGATCACTTTTCAAAACAGGGTGCTCTTCTTGGTCTCTGGT
TTGCATAAAGAAGAAACTGCAGGAAATATATATATGTATATATATATATATATATATATATATA
TATATATATATATATATTTTGAAAGACAAATCCATTAACCCAGTGAGGTGGAAGATTCTGCTCC
ATTTCCATTCACTCCTGGCTAGGTGGAAGCAACTTATTTTTAAAATAAGCAATGTTACCTGATT
GCCAAGACGCTTCTGAAGCATTTTCTTACAACTCCAAATTTGTTTTTTTAAAAAAAATAAATCT
GATTAACATTGAGTGGTTTCTACATCCATGTGCAAATTATTTATTTATTAGCCAGCACCAGATG
CATGAGCTAATTACCTCTCCTGTCTCTGTGCCTTCTGTTTGCCCACAGTGAACTCATTGTTTAA
ATGCTTCAAGAACACTCAAGCTGTGTGTTTAAAAAAAAAAAAAGGATTGTATTGATTTGTACTG
GTAGTTTATAAAATTTAATTAAAACACAAGACATGAATGAAAGGTGGCATTGCACAGCTAATAA
AATTTGTGAATTTGATTTCTTTCCATAA

hide sequence

RefSeq Acc Id:

XM_006253029 ⟹ XP_006253091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	25,914,587 - 26,097,306 (+)	NCBI
mRatBN7.2	16	21,147,975 - 21,330,586 (+)	NCBI
Rnor_6.0	16	22,890,798 - 23,075,071 (+)	NCBI
Rnor_5.0	16	22,733,680 - 22,963,531 (+)	NCBI

Sequence:

show sequence

AGTGGTAGTGTATATACACACACATGGATATATTGCGACTATTACTTGAATTATGGGACAGACA
GGATAAAAATAAGAAAAACTCTTGGGGAACTGAGCCCCAAGTTAGTTCACTGGAAACAGTATAT
TACAGGCTCCACATGAGCGCCTTAGTGTCTTTCCAGAATCTTTCTTACTTACAGGGAGTCTTTG
GCCTGACTGTGTTCACTTTCGGCTTGTATCTCAGCTGACAGCATCTGTTTTGTCAAGGGCTGGG
ACAGTGTGGGTCCATCCGTAACGCACTCCATCAGACTTCAGCGTGGGCAAGAAGTACCGAGCGA
GCGTGGTGGCGCTGAGCTGAACACGGTGCTAGCAGAAGGGGGCGGTACTTTCCCTCTGGACCCT
GACTTGGAAGCCAAGTGCGACTCGAGCGCAGTCACCGCCAGAAGCAGATGTGTGAGCGGAGCAG
CTGTGCGCCTCTCTTTCTGCCGAGGATCCCCCTCATCTTCAGCACATCAGGAAGACTATGATGG
AAACAAAAGAAAGAACTTGGAGGTTCCACTTAACTGATTGTTTCTGCCTAGAGGATCTTCTCTT
GGAAGCAGGAGAGCCTTCTCATGTAATGGCTGACTTCCAAAGACAGGCTATGTTCTAGAAGGAA
ATGGATGGAATCAGTTCAGGGGACTTCAGCCGCACTGTGGTCTAACCAGAAAAGCCCGTGTTGG
GGGCCCTCCTGGTGCCCTGGGATGTTGCATACTCTGGACCTGGATGCATGGCCCGCACCTGAGT
GAGGATGGTCCGACGCGGGCTGGTGGGGTGGATTTCCCGGGTAGTGATTCTGCTGGTGCTGCTC
TGTTGTGCCATCTCTGTTCTCTACATGTTAGCCTGCACCCCAAAAGGCGACCAAGAGCAGCTGG
GACTGCCACGGGCCAACGGCCCCACAGGCAAAGATGGCTACCAAGCGGTGCTACAGGAGCGTGA
GGAACAGCATCGCAACTATGTGAATAGTCTTAAGCGACAGATCGCGCAGCTCAAGGATGAACTG
CAGGCACGCAGTGAGCAGCTCCGCAGTGGGCAGGACCAGGCCAGCGATGCCACCAGCCTGCGGT
CAGGCTGGGACCCTGAACCCAAAGCCCAGGCTGATATACTGGCCTTCCTGCGTGGGCAGGTGGA
CAAGGCTGAGGTCCACGCCGGTGTCAAGCTGGCCACCGAATATGCTGCTGTGCCTTTTGATAGC
TTCACTCTGCAGAAAGTATACCAGCTGGAGACTGGTCTGACCCGCCACCCTGAGGAGAAACCAG
TGAGGAAGGACAAGCGAGATGAGCTAGTGGAAGCTATCGAATCAGCCCTGGAGAGTCTAAACAG
CCCTGTGGAAAGCAGCCCACACCAGCGCCCTTACACGGCTGCAGACTTCATAGAAGGGATCTAC
CGAACAGAAAGGGATAAAGGCACTTTGTATGAGCTGACCTTCAAAGGGGACCATAAGCATGAAT
TCCAACGACTTGTCCTATTTCGACCTTTTGGCCCCATCATGAAAGTGAAGAAGGAAAAGCTCAA
CATGGCCAACACACTTATCAACGTTATCGTGCCCCTAGCGAGGAGGGTGGACAAGTTCCGGCAC
TTCATGCAGAACTTCAGGGAGATGTGCATCCAACAAGATGGGAGAGTTCATCTTACCGTTGTTT
ATTTTGGGAAAGAAGAAATGAATGAAGTCAAAGGAATACTTGAAAACACTTCCAAGGCTGCCAA
TTTTAGAAACTTCACCTTCATCCAGCTGAATGGAGAGTTCTCCCGGGGAAAGGGACTGGATGTT
GGAGCCCGCTTCTGGAAGGGAAGTAATGTCGTGCTCTTTTTCTGTGATGTGGACATCTACTTCA
CCTCTGAGTTCCTCAACACATGTAGGCTGAACACACAGCCAGGGAAGAAGGTATTTTATCCGGT
TCTTTTCAGTCAGTATAACCCTGGCATAATCTACGGCCATCATGATGCTGTCCCTGCCCTAGAA
CAGCAGCTGGTCATAAAGAAGGAAACAGGATTTTGGAGGGACTTTGGATTCGGAATGACTTGTC
AGTACCGGTCAGACTTCATCAACATAGGTGGATTTGACCTGGACATCAAAGGCTGGGGCGGTGA
AGATGTGCACCTGTACCGGAAATATCTCCATAGCAACCTCATAGTGATACGCACGCCTGTACGG
GGACTTTTCCACCTTTGGCATGAGAAGCACTGTATGGATGAACTGACCCCTGAGCAGTACAGGA
TGTGCATGCAATCAAAGGCTATGAATGAAGCATCCCACGGGCAGCTGGGAATGCTTGTCTTCCG
GCATGAAATAGAGGCTCACCTTCGCAAACAGAAGCTCAAAGCCAGCAGTAAAAAGACATGACCT
CCCAGGTAAAGATTAGCCAAGACGTTTAAATTTTGTGCCTTTGGCAGTTACTGAAGAAGTAGAT
GCAACAAGGTATAGACTTCCACAAAGGGCAACAGAGAATCTGACTGATGAGTGACAGATGAATG
AAGAGTCTCGGGTTTCTGTTGGCTCTGTGTATGCTGGTGACTCTGACTGTGTTTACAGCCAAAT
GAGCTCTCTGGTCCCTGCTCCCTGAAATAGTCACAACCGGTTTCAGAAAACCAGAAGGAGCTGC
AAGCCCACTGACTTCTCTTCTTTGGATTGGTTACATCAGAGGGCTTTGGTACTACTAGGACTAC
CAAAGGCTCAGATGGAGCTCTCGGACGGAGCAGAGGACCTGTGTGAAAAGTGGAGCTCTGACAT
TAGTGTCCTCCACCAGACCGTGAGCAAAATCAAAGGGACCTGGAAACAAACCATCCAAACTGTC
ATTTCCCTAGTATTAACTGAAAAACAAACAAACAAACAAACAAAAACCCTAAAAAACAAAAAAA
AGACAAAAACAAAAACAAAAAACAAAGCCAACAACAACTACAACAAAAACCCCTCTCTTTCCCA
TTATTGTTTAGTCATCTCTGTTCTAAAAATGCACTTTTTTTGCTTCTGAGCATTATGCTTATTT
AATTACCCATTTCCAAGCCTTAGTAGGAGTACATTGTAGTACACACATTTTTATGATTTTTTTA
AAGATTTGTTTTTATGTTTTTGCTGATTTGTTTACTTGAGACAGTCTTGACACAGAGCCCGAGA
TAACTTGAAATCCTGATCCTCCTGTCTCCGAAGCCTGAGTGCTGAGATTACAGGTAGCTAGAAG
ATACGTGCAGAGGCGTGGAGTGAGGAGCTCCAGTTGCAGGCATGTGGAGCTGATCCAAGGACTT
GCCAGTCTCCGACCACAAGAAGGCTACATGTGGGGCTGCAGAGAGAAAGGTATCTACAAACTAA
GACTGTCGGAAGAGGAGCAATCAAACACTGGAAAAAGAAAAAGATACTTTTCACAAAGAAAGGA
CACTAAGAAGACCTTCGTGTATTTACTAGAGAATATAATNNTTTCTCTTCTGGAGAAATGGGAC
CACTTTCTTACCTGTTTGAATAAACCAAAGTTATGAACCAAATGATCACTTTTCAAAACAGGGT
GCTCTTCTTGGTCTCTGGTTTGCATAAAGAAGAAACTGCAGGAAATATATATATGTATATATAT
ATATATATATATATATATATATATATATATATATATTTTGAAAGACAAATCCATTAACCCAGTG
AGGTGGAAGATTCTGCTCCATTTCCATTCACTCCTGGCTAGGTGGAAGCAACTTATTTTTAAAA
TAAGCAATGTTACCTGATTGCCAAGACGCTTCTGAAGCATTTTCTTACAACTCCAAATTTGTTT
TTTTAAAAAAAATAAATCTGATTAACATTGAGTGGTTTCTACATCCATGTGCAAATTATTTATT
TATTAGCCAGCACCAGATGCATGAGCTAATTACCTCTCCTGTCTCTGTGCCTTCTGTTTGCCCA
CAGTGAACTCATTGTTTAAATGCTTCAAGAACACTCAAGCTGTGTGTTTAAAAAAAAAAAAAGG
ATTGTATTGATTTGTACTGGTAGTTTATAAAATTTAATTAAAACACAAGACATGAATGAAAGGT
GGCATTGCACAGCTAATAAAATTTGTGAATTTGATTTCTTTCCATAA

hide sequence

RefSeq Acc Id:

XM_008771114 ⟹ XP_008769336

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	25,761,946 - 26,097,306 (+)	NCBI
mRatBN7.2	16	20,995,210 - 21,330,586 (+)	NCBI
Rnor_6.0	16	22,704,318 - 23,075,058 (+)	NCBI

Sequence:

show sequence

CGAGCCCAGGGCCGCCTCGCAGGAGGGAAAGTTCGGCGGCGCCGGGCGGGAGCAGCGTAGCCAA
GGGAGCCGGCTCCGCTGTCTGCAGGGTTGCTTGGGGTCCCTTGATCATGAATGACAGATTGAAG
AGTTGCCATGTGGATCTACAGTCCTCAATGTGAGAAGCTTTAAACAATCTTTTCTATGGCTGGA
ATCCTCAAATGTTCTACTTAATTGCCTCTGGAGCATCACCAGTGGTGGCGCTGAGCTGAACACG
GTGCTAGCAGAAGGGGGCGGTACTTTCCCTCTGGACCCTGACTTGGAAGCCAAGTGCGACTCGA
GCGCAGTCACCGCCAGAAGCAGATGTGTGAGCGGAGCAGCTGTGCGCCTCTCTTTCTGCCGAGG
ATCCCCCTCATCTTCAGCACATCAGGAAGACTATGATGGAAACAAAAGAAAGAACTTGGAGGTT
CCACTTAACTGATTGTTTCTGCCTAGAGGATCTTCTCTTGGAAGCAGGAGAGCCTTCTCATGTA
ATGGCTGACTTCCAAAGACAGGCTATGTTCTAGAAGGAAATGGATGGAATCAGTTCAGGGGACT
TCAGCCGCACTGTGGTCTAACCAGAAAAGCCCGTGTTGGGGGCCCTCCTGGTGCCCTGGGATGT
TGCATACTCTGGACCTGGATGCATGGCCCGCACCTGAGTGAGGATGGTCCGACGCGGGCTGGTG
GGGTGGATTTCCCGGGTAGTGATTCTGCTGGTGCTGCTCTGTTGTGCCATCTCTGTTCTCTACA
TGTTAGCCTGCACCCCAAAAGGCGACCAAGAGCAGCTGGGACTGCCACGGGCCAACGGCCCCAC
AGGCAAAGATGGCTACCAAGCGGTGCTACAGGAGCGTGAGGAACAGCATCGCAACTATGTGAAT
AGTCTTAAGCGACAGATCGCGCAGCTCAAGGATGAACTGCAGGCACGCAGTGAGCAGCTCCGCA
GTGGGCAGGACCAGGCCAGCGATGCCACCAGCCTGCGGTCAGGCTGGGACCCTGAACCCAAAGC
CCAGGCTGATATACTGGCCTTCCTGCGTGGGCAGGTGGACAAGGCTGAGGTCCACGCCGGTGTC
AAGCTGGCCACCGAATATGCTGCTGTGCCTTTTGATAGCTTCACTCTGCAGAAAGTATACCAGC
TGGAGACTGGTCTGACCCGCCACCCTGAGGAGAAACCAGTGAGGAAGGACAAGCGAGATGAGCT
AGTGGAAGCTATCGAATCAGCCCTGGAGAGTCTAAACAGCCCTGTGGAAAGCAGCCCACACCAG
CGCCCTTACACGGCTGCAGACTTCATAGAAGGGATCTACCGAACAGAAAGGGATAAAGGCACTT
TGTATGAGCTGACCTTCAAAGGGGACCATAAGCATGAATTCCAACGACTTGTCCTATTTCGACC
TTTTGGCCCCATCATGAAAGTGAAGAAGGAAAAGCTCAACATGGCCAACACACTTATCAACGTT
ATCGTGCCCCTAGCGAGGAGGGTGGACAAGTTCCGGCACTTCATGCAGAACTTCAGGGAGATGT
GCATCCAACAAGATGGGAGAGTTCATCTTACCGTTGTTTATTTTGGGAAAGAAGAAATGAATGA
AGTCAAAGGAATACTTGAAAACACTTCCAAGGCTGCCAATTTTAGAAACTTCACCTTCATCCAG
CTGAATGGAGAGTTCTCCCGGGGAAAGGGACTGGATGTTGGAGCCCGCTTCTGGAAGGGAAGTA
ATGTCGTGCTCTTTTTCTGTGATGTGGACATCTACTTCACCTCTGAGTTCCTCAACACATGTAG
GCTGAACACACAGCCAGGGAAGAAGGTATTTTATCCGGTTCTTTTCAGTCAGTATAACCCTGGC
ATAATCTACGGCCATCATGATGCTGTCCCTGCCCTAGAACAGCAGCTGGTCATAAAGAAGGAAA
CAGGATTTTGGAGGGACTTTGGATTCGGAATGACTTGTCAGTACCGGTCAGACTTCATCAACAT
AGGTGGATTTGACCTGGACATCAAAGGCTGGGGCGGTGAAGATGTGCACCTGTACCGGAAATAT
CTCCATAGCAACCTCATAGTGATACGCACGCCTGTACGGGGACTTTTCCACCTTTGGCATGAGA
AGCACTGTATGGATGAACTGACCCCTGAGCAGTACAGGATGTGCATGCAATCAAAGGCTATGAA
TGAAGCATCCCACGGGCAGCTGGGAATGCTTGTCTTCCGGCATGAAATAGAGGCTCACCTTCGC
AAACAGAAGCTCAAAGCCAGCAGTAAAAAGACATGACCTCCCAGGTAAAGATTAGCCAAGACGT
TTAAATTTTGTGCCTTTGGCAGTTACTGAAGAAGTAGATGCAACAAGGTATAGACTTCCACAAA
GGGCAACAGAGAATCTGACTGATGAGTGACAGATGAATGAAGAGTCTCGGGTTTCTGTTGGCTC
TGTGTATGCTGGTGACTCTGACTGTGTTTACAGCCAAATGAGCTCTCTGGTCCCTGCTCCCTGA
AATAGTCACAACCGGTTTCAGAAAACCAGAAGGAGCTGCAAGCCCACTGACTTCTCTTCTTTGG
ATTGGTTACATCAGAGGGCTTTGGTACTACTAGGACTACCAAAGGCTCAGATGGAGCTCTCGGA
CGGAGCAGAGGACCTGTGTGAAAAGTGGAGCTCTGACATTAGTGTCCTCCACCAGACCGTGAGC
AAAATCAAAGGGACCTGGAAACAAACCATCCAAACTGTCATTTCCCTAGTATTAACTGAAAAAC
AAACAAACAAACAAACAAAAACCCTAAAAAACAAAAAAAAGACAAAAACAAAAACAAAAAACAA
AGCCAACAACAACTACAACAAAAACCCCTCTCTTTCCCATTATTGTTTAGTCATCTCTGTTCTA
AAAATGCACTTTTTTTGCTTCTGAGCATTATGCTTATTTAATTACCCATTTCCAAGCCTTAGTA
GGAGTACATTGTAGTACACACATTTTTATGATTTTTTTAAAGATTTGTTTTTATGTTTTTGCTG
ATTTGTTTACTTGAGACAGTCTTGACACAGAGCCCGAGATAACTTGAAATCCTGATCCTCCTGT
CTCCGAAGCCTGAGTGCTGAGATTACAGGTAGCTAGAAGATACGTGCAGAGGCGTGGAGTGAGG
AGCTCCAGTTGCAGGCATGTGGAGCTGATCCAAGGACTTGCCAGTCTCCGACCACAAGAAGGCT
ACATGTGGGGCTGCAGAGAGAAAGGTATCTACAAACTAAGACTGTCGGAAGAGGAGCAATCAAA
CACTGGAAAAAGAAAAAGATACTTTTCACAAAGAAAGGACACTAAGAAGACCTTCGTGTATTTA
CTAGAGAATATAATNNTTTCTCTTCTGGAGAAATGGGACCACTTTCTTACCTGTTTGAATAAAC
CAAAGTTATGAACCAAATGATCACTTTTCAAAACAGGGTGCTCTTCTTGGTCTCTGGTTTGCAT
AAAGAAGAAACTGCAGGAAATATATATATGTATATATATATATATATATATATATATATATATA
TATATATATATTTTGAAAGACAAATCCATTAACCCAGTGAGGTGGAAGATTCTGCTCCATTTCC
ATTCACTCCTGGCTAGGTGGAAGCAACTTATTTTTAAAATAAGCAATGTTACCTGATTGCCAAG
ACGCTTCTGAAGCATTTTCTTACAACTCCAAATTTGTTTTTTTAAAAAAAATAAATCTGATTAA
CATTGAGTGGTTTCTACATCCATGTGCAAATTATTTATTTATTAGCCAGCACCAGATGCATGAG
CTAATTACCTCTCCTGTCTCTGTGCCTTCTGTTTGCCCACAGTGAACTCATTGTTTAAATGCTT
CAAGAACACTCAAGCTGTGTGTTTAAAAAAAAAAAAAGGATTGTATTGATTTGTACTGGTAGTT
TATAAAATTTAATTAAAACACAAGACATGAATGAAAGGTGGCATTGCACAGCTAATAAAATTTG
TGAATTTGA

hide sequence

RefSeq Acc Id:

XM_008771116 ⟹ XP_008769338

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	25,914,002 - 26,097,306 (+)	NCBI
mRatBN7.2	16	21,147,277 - 21,330,586 (+)	NCBI
Rnor_6.0	16	22,890,257 - 23,075,071 (+)	NCBI

Sequence:

show sequence

ATAAACCCATTTCAGCGCTTGGCCTGCAGGCTGGGAAGTAACATTATTTGTTGTCAGGGATGGA
AAACAGCTCAGATTCAGGTCCACGTTGACACTGCTGCCTCTCTGCCAACTGCAGCTCCGTTTAG
ACATAGATTAATTAGGCTGGCAGAGGGGGGCTGGGCTGTGAGAGCCGTGTGGAAGGAAGCAGGC
AGCTCTACGGAAGGAGTCTAAGCCGGAGGTCTTGGGACTTGTCCCCCAGGAAGATAACTGCCAC
TGCTAAAACCATAGCAAACCAGGTGGTGGCGCTGAGCTGAACACGGTGCTAGCAGAAGGGGGCG
GTACTTTCCCTCTGGACCCTGACTTGGAAGCCAAGTGCGACTCGAGCGCAGTCACCGCCAGAAG
CAGATGTGTGAGCGGAGCAGCTGTGCGCCTCTCTTTCTGCCGAGGATCCCCCTCATCTTCAGCA
CATCAGGAAGACTATGATGGAAACAAAAGAAAGAACTTGGAGGTTCCACTTAACTGATTGTTTC
TGCCTAGAGGATCTTCTCTTGGAAGCAGGAGAGCCTTCTCATGTAATGGCTGACTTCCAAAGAC
AGGCTATGTTCTAGAAGGAAATGGATGGAATCAGTTCAGGGGACTTCAGCCGCACTGTGGTCTA
ACCAGAAAAGCCCGTGTTGGGGGCCCTCCTGGTGCCCTGGGATGTTGCATACTCTGGACCTGGA
TGCATGGCCCGCACCTGAGTGAGGATGGTCCGACGCGGGCTGGTGGGGTGGATTTCCCGGGTAG
TGATTCTGCTGGTGCTGCTCTGTTGTGCCATCTCTGTTCTCTACATGTTAGCCTGCACCCCAAA
AGGCGACCAAGAGCAGCTGGGACTGCCACGGGCCAACGGCCCCACAGGCAAAGATGGCTACCAA
GCGGTGCTACAGGAGCGTGAGGAACAGCATCGCAACTATGTGAATAGTCTTAAGCGACAGATCG
CGCAGCTCAAGGATGAACTGCAGGCACGCAGTGAGCAGCTCCGCAGTGGGCAGGACCAGGCCAG
CGATGCCACCAGCCTGCGGTCAGGCTGGGACCCTGAACCCAAAGCCCAGGCTGATATACTGGCC
TTCCTGCGTGGGCAGGTGGACAAGGCTGAGGTCCACGCCGGTGTCAAGCTGGCCACCGAATATG
CTGCTGTGCCTTTTGATAGCTTCACTCTGCAGAAAGTATACCAGCTGGAGACTGGTCTGACCCG
CCACCCTGAGGAGAAACCAGTGAGGAAGGACAAGCGAGATGAGCTAGTGGAAGCTATCGAATCA
GCCCTGGAGAGTCTAAACAGCCCTGTGGAAAGCAGCCCACACCAGCGCCCTTACACGGCTGCAG
ACTTCATAGAAGGGATCTACCGAACAGAAAGGGATAAAGGCACTTTGTATGAGCTGACCTTCAA
AGGGGACCATAAGCATGAATTCCAACGACTTGTCCTATTTCGACCTTTTGGCCCCATCATGAAA
GTGAAGAAGGAAAAGCTCAACATGGCCAACACACTTATCAACGTTATCGTGCCCCTAGCGAGGA
GGGTGGACAAGTTCCGGCACTTCATGCAGAACTTCAGGGAGATGTGCATCCAACAAGATGGGAG
AGTTCATCTTACCGTTGTTTATTTTGGGAAAGAAGAAATGAATGAAGTCAAAGGAATACTTGAA
AACACTTCCAAGGCTGCCAATTTTAGAAACTTCACCTTCATCCAGCTGAATGGAGAGTTCTCCC
GGGGAAAGGGACTGGATGTTGGAGCCCGCTTCTGGAAGGGAAGTAATGTCGTGCTCTTTTTCTG
TGATGTGGACATCTACTTCACCTCTGAGTTCCTCAACACATGTAGGCTGAACACACAGCCAGGG
AAGAAGGTATTTTATCCGGTTCTTTTCAGTCAGTATAACCCTGGCATAATCTACGGCCATCATG
ATGCTGTCCCTGCCCTAGAACAGCAGCTGGTCATAAAGAAGGAAACAGGATTTTGGAGGGACTT
TGGATTCGGAATGACTTGTCAGTACCGGTCAGACTTCATCAACATAGGTGGATTTGACCTGGAC
ATCAAAGGCTGGGGCGGTGAAGATGTGCACCTGTACCGGAAATATCTCCATAGCAACCTCATAG
TGATACGCACGCCTGTACGGGGACTTTTCCACCTTTGGCATGAGAAGCACTGTATGGATGAACT
GACCCCTGAGCAGTACAGGATGTGCATGCAATCAAAGGCTATGAATGAAGCATCCCACGGGCAG
CTGGGAATGCTTGTCTTCCGGCATGAAATAGAGGCTCACCTTCGCAAACAGAAGCTCAAAGCCA
GCAGTAAAAAGACATGACCTCCCAGGTAAAGATTAGCCAAGACGTTTAAATTTTGTGCCTTTGG
CAGTTACTGAAGAAGTAGATGCAACAAGGTATAGACTTCCACAAAGGGCAACAGAGAATCTGAC
TGATGAGTGACAGATGAATGAAGAGTCTCGGGTTTCTGTTGGCTCTGTGTATGCTGGTGACTCT
GACTGTGTTTACAGCCAAATGAGCTCTCTGGTCCCTGCTCCCTGAAATAGTCACAACCGGTTTC
AGAAAACCAGAAGGAGCTGCAAGCCCACTGACTTCTCTTCTTTGGATTGGTTACATCAGAGGGC
TTTGGTACTACTAGGACTACCAAAGGCTCAGATGGAGCTCTCGGACGGAGCAGAGGACCTGTGT
GAAAAGTGGAGCTCTGACATTAGTGTCCTCCACCAGACCGTGAGCAAAATCAAAGGGACCTGGA
AACAAACCATCCAAACTGTCATTTCCCTAGTATTAACTGAAAAACAAACAAACAAACAAACAAA
AACCCTAAAAAACAAAAAAAAGACAAAAACAAAAACAAAAAACAAAGCCAACAACAACTACAAC
AAAAACCCCTCTCTTTCCCATTATTGTTTAGTCATCTCTGTTCTAAAAATGCACTTTTTTTGCT
TCTGAGCATTATGCTTATTTAATTACCCATTTCCAAGCCTTAGTAGGAGTACATTGTAGTACAC
ACATTTTTATGATTTTTTTAAAGATTTGTTTTTATGTTTTTGCTGATTTGTTTACTTGAGACAG
TCTTGACACAGAGCCCGAGATAACTTGAAATCCTGATCCTCCTGTCTCCGAAGCCTGAGTGCTG
AGATTACAGGTAGCTAGAAGATACGTGCAGAGGCGTGGAGTGAGGAGCTCCAGTTGCAGGCATG
TGGAGCTGATCCAAGGACTTGCCAGTCTCCGACCACAAGAAGGCTACATGTGGGGCTGCAGAGA
GAAAGGTATCTACAAACTAAGACTGTCGGAAGAGGAGCAATCAAACACTGGAAAAAGAAAAAGA
TACTTTTCACAAAGAAAGGACACTAAGAAGACCTTCGTGTATTTACTAGAGAATATAATNNTTT
CTCTTCTGGAGAAATGGGACCACTTTCTTACCTGTTTGAATAAACCAAAGTTATGAACCAAATG
ATCACTTTTCAAAACAGGGTGCTCTTCTTGGTCTCTGGTTTGCATAAAGAAGAAACTGCAGGAA
ATATATATATGTATATATATATATATATATATATATATATATATATATATATATATTTTGAAAG
ACAAATCCATTAACCCAGTGAGGTGGAAGATTCTGCTCCATTTCCATTCACTCCTGGCTAGGTG
GAAGCAACTTATTTTTAAAATAAGCAATGTTACCTGATTGCCAAGACGCTTCTGAAGCATTTTC
TTACAACTCCAAATTTGTTTTTTTAAAAAAAATAAATCTGATTAACATTGAGTGGTTTCTACAT
CCATGTGCAAATTATTTATTTATTAGCCAGCACCAGATGCATGAGCTAATTACCTCTCCTGTCT
CTGTGCCTTCTGTTTGCCCACAGTGAACTCATTGTTTAAATGCTTCAAGAACACTCAAGCTGTG
TGTTTAAAAAAAAAAAAAGGATTGTATTGATTTGTACTGGTAGTTTATAAAATTTAATTAAAAC
ACAAGACATGAATGAAAGGTGGCATTGCACAGCTAATAAAATTTGTGAATTTGATTTCTTTCCA
TAA

hide sequence

RefSeq Acc Id:

XM_017600096 ⟹ XP_017455585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	25,761,946 - 26,097,306 (+)	NCBI
mRatBN7.2	16	20,995,210 - 21,330,586 (+)	NCBI
Rnor_6.0	16	22,704,319 - 23,075,058 (+)	NCBI

Sequence:

show sequence

GAGCCCAGGGCCGCCTCGCAGGAGGGAAAGTTCGGCGGCGCCGGGCGGGAGCAGCGTAGCCAAG
GGAGCCGGCTCCGCTGTCTGCAGGGTTGCTTGGGGTCTCGTTTTCCTCCTGGAATACAGCGTGT
GCAGATGGATCAAAGTTACCTACTATAAAGTCCCTTGATCATGAATGACAGATTGAAGAGTTGC
CATGTGGATCTACAGTCCTCAATGTGAGAAGCTTTAAACAATCTTTTCTATGGCTGGAATCCTC
AAATGTTCTACTTAATTGCCTCTGGAGCATCACCAGTGGTGGCGCTGAGCTGAACACGGTGCTA
GCAGAAGGGGGCGGTACTTTCCCTCTGGACCCTGACTTGGAAGCCAAGTGCGACTCGAGCGCAG
TCACCGCCAGAAGCAGATGTGTGAGCGGAGCAGCTGTGCGCCTCTCTTTCTGCCGAGGATCCCC
CTCATCTTCAGCACATCAGGAAGACTATGATGGAAACAAAAGAAAGAACTTGGAGGTTCCACTT
AACTGATTGTTTCTGCCTAGAGGATCTTCTCTTGGAAGCAGGAGAGCCTTCTCATGTAATGGCT
GACTTCCAAAGACAGGCTATGTTCTAGAAGGAAATGGATGGAATCAGTTCAGGGGACTTCAGCC
GCACTGTGGTCTAACCAGAAAAGCCCGTGTTGGGGGCCCTCCTGGTGCCCTGGGATGTTGCATA
CTCTGGACCTGGATGCATGGCCCGCACCTGAGTGAGGATGGTCCGACGCGGGCTGGTGGGGTGG
ATTTCCCGGGTAGTGATTCTGCTGGTGCTGCTCTGTTGTGCCATCTCTGTTCTCTACATGTTAG
CCTGCACCCCAAAAGGCGACCAAGAGCAGCTGGGACTGCCACGGGCCAACGGCCCCACAGGCAA
AGATGGCTACCAAGCGGTGCTACAGGAGCGTGAGGAACAGCATCGCAACTATGTGAATAGTCTT
AAGCGACAGATCGCGCAGCTCAAGGATGAACTGCAGGCACGCAGTGAGCAGCTCCGCAGTGGGC
AGGACCAGGCCAGCGATGCCACCAGCCTGCGGTCAGGCTGGGACCCTGAACCCAAAGCCCAGGC
TGATATACTGGCCTTCCTGCGTGGGCAGGTGGACAAGGCTGAGGTCCACGCCGGTGTCAAGCTG
GCCACCGAATATGCTGCTGTGCCTTTTGATAGCTTCACTCTGCAGAAAGTATACCAGCTGGAGA
CTGGTCTGACCCGCCACCCTGAGGAGAAACCAGTGAGGAAGGACAAGCGAGATGAGCTAGTGGA
AGCTATCGAATCAGCCCTGGAGAGTCTAAACAGCCCTGTGGAAAGCAGCCCACACCAGCGCCCT
TACACGGCTGCAGACTTCATAGAAGGGATCTACCGAACAGAAAGGGATAAAGGCACTTTGTATG
AGCTGACCTTCAAAGGGGACCATAAGCATGAATTCCAACGACTTGTCCTATTTCGACCTTTTGG
CCCCATCATGAAAGTGAAGAAGGAAAAGCTCAACATGGCCAACACACTTATCAACGTTATCGTG
CCCCTAGCGAGGAGGGTGGACAAGTTCCGGCACTTCATGCAGAACTTCAGGGAGATGTGCATCC
AACAAGATGGGAGAGTTCATCTTACCGTTGTTTATTTTGGGAAAGAAGAAATGAATGAAGTCAA
AGGAATACTTGAAAACACTTCCAAGGCTGCCAATTTTAGAAACTTCACCTTCATCCAGCTGAAT
GGAGAGTTCTCCCGGGGAAAGGGACTGGATGTTGGAGCCCGCTTCTGGAAGGGAAGTAATGTCG
TGCTCTTTTTCTGTGATGTGGACATCTACTTCACCTCTGAGTTCCTCAACACATGTAGGCTGAA
CACACAGCCAGGGAAGAAGGTATTTTATCCGGTTCTTTTCAGTCAGTATAACCCTGGCATAATC
TACGGCCATCATGATGCTGTCCCTGCCCTAGAACAGCAGCTGGTCATAAAGAAGGAAACAGGAT
TTTGGAGGGACTTTGGATTCGGAATGACTTGTCAGTACCGGTCAGACTTCATCAACATAGGTGG
ATTTGACCTGGACATCAAAGGCTGGGGCGGTGAAGATGTGCACCTGTACCGGAAATATCTCCAT
AGCAACCTCATAGTGATACGCACGCCTGTACGGGGACTTTTCCACCTTTGGCATGAGAAGCACT
GTATGGATGAACTGACCCCTGAGCAGTACAGGATGTGCATGCAATCAAAGGCTATGAATGAAGC
ATCCCACGGGCAGCTGGGAATGCTTGTCTTCCGGCATGAAATAGAGGCTCACCTTCGCAAACAG
AAGCTCAAAGCCAGCAGTAAAAAGACATGACCTCCCAGGTAAAGATTAGCCAAGACGTTTAAAT
TTTGTGCCTTTGGCAGTTACTGAAGAAGTAGATGCAACAAGGTATAGACTTCCACAAAGGGCAA
CAGAGAATCTGACTGATGAGTGACAGATGAATGAAGAGTCTCGGGTTTCTGTTGGCTCTGTGTA
TGCTGGTGACTCTGACTGTGTTTACAGCCAAATGAGCTCTCTGGTCCCTGCTCCCTGAAATAGT
CACAACCGGTTTCAGAAAACCAGAAGGAGCTGCAAGCCCACTGACTTCTCTTCTTTGGATTGGT
TACATCAGAGGGCTTTGGTACTACTAGGACTACCAAAGGCTCAGATGGAGCTCTCGGACGGAGC
AGAGGACCTGTGTGAAAAGTGGAGCTCTGACATTAGTGTCCTCCACCAGACCGTGAGCAAAATC
AAAGGGACCTGGAAACAAACCATCCAAACTGTCATTTCCCTAGTATTAACTGAAAAACAAACAA
ACAAACAAACAAAAACCCTAAAAAACAAAAAAAAGACAAAAACAAAAACAAAAAACAAAGCCAA
CAACAACTACAACAAAAACCCCTCTCTTTCCCATTATTGTTTAGTCATCTCTGTTCTAAAAATG
CACTTTTTTTGCTTCTGAGCATTATGCTTATTTAATTACCCATTTCCAAGCCTTAGTAGGAGTA
CATTGTAGTACACACATTTTTATGATTTTTTTAAAGATTTGTTTTTATGTTTTTGCTGATTTGT
TTACTTGAGACAGTCTTGACACAGAGCCCGAGATAACTTGAAATCCTGATCCTCCTGTCTCCGA
AGCCTGAGTGCTGAGATTACAGGTAGCTAGAAGATACGTGCAGAGGCGTGGAGTGAGGAGCTCC
AGTTGCAGGCATGTGGAGCTGATCCAAGGACTTGCCAGTCTCCGACCACAAGAAGGCTACATGT
GGGGCTGCAGAGAGAAAGGTATCTACAAACTAAGACTGTCGGAAGAGGAGCAATCAAACACTGG
AAAAAGAAAAAGATACTTTTCACAAAGAAAGGACACTAAGAAGACCTTCGTGTATTTACTAGAG
AATATAATNNTTTCTCTTCTGGAGAAATGGGACCACTTTCTTACCTGTTTGAATAAACCAAAGT
TATGAACCAAATGATCACTTTTCAAAACAGGGTGCTCTTCTTGGTCTCTGGTTTGCATAAAGAA
GAAACTGCAGGAAATATATATATGTATATATATATATATATATATATATATATATATATATATA
TATATTTTGAAAGACAAATCCATTAACCCAGTGAGGTGGAAGATTCTGCTCCATTTCCATTCAC
TCCTGGCTAGGTGGAAGCAACTTATTTTTAAAATAAGCAATGTTACCTGATTGCCAAGACGCTT
CTGAAGCATTTTCTTACAACTCCAAATTTGTTTTTTTAAAAAAAATAAATCTGATTAACATTGA
GTGGTTTCTACATCCATGTGCAAATTATTTATTTATTAGCCAGCACCAGATGCATGAGCTAATT
ACCTCTCCTGTCTCTGTGCCTTCTGTTTGCCCACAGTGAACTCATTGTTTAAATGCTTCAAGAA
CACTCAAGCTGTGTGTTTAAAAAAAAAAAAAGGATTGTATTGATTTGTACTGGTAGTTTATAAA
ATTTAATTAAAACACAAGACATGAATGAAAGGTGGCATTGCACAGCTAATAAAATTTGTGAATT
TGA

hide sequence

RefSeq Acc Id:

XM_039094494 ⟹ XP_038950422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	25,761,946 - 26,097,306 (+)	NCBI
mRatBN7.2	16	20,995,210 - 21,330,586 (+)	NCBI

RefSeq Acc Id:

XM_039094495 ⟹ XP_038950423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	25,761,946 - 26,097,306 (+)	NCBI
mRatBN7.2	16	20,995,210 - 21,330,586 (+)	NCBI

RefSeq Acc Id:

XM_063275379 ⟹ XP_063131449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	25,761,946 - 26,097,306 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100779	(Get FASTA)	NCBI Sequence Viewer
	NP_001423574	(Get FASTA)	NCBI Sequence Viewer
	NP_001423575	(Get FASTA)	NCBI Sequence Viewer
	NP_001423576	(Get FASTA)	NCBI Sequence Viewer
	NP_001423577	(Get FASTA)	NCBI Sequence Viewer
	XP_006253089	(Get FASTA)	NCBI Sequence Viewer
	XP_006253090	(Get FASTA)	NCBI Sequence Viewer
	XP_006253091	(Get FASTA)	NCBI Sequence Viewer
	XP_008769336	(Get FASTA)	NCBI Sequence Viewer
	XP_008769338	(Get FASTA)	NCBI Sequence Viewer
	XP_017455585	(Get FASTA)	NCBI Sequence Viewer
	XP_038950422	(Get FASTA)	NCBI Sequence Viewer
	XP_038950423	(Get FASTA)	NCBI Sequence Viewer
	XP_063131449	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68857	(Get FASTA)	NCBI Sequence Viewer
	EDL75936	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000098230
	ENSRNOP00000098230.1

RefSeq Acc Id:

NP_001100779 ⟸ NM_001107309

- UniProtKB:

B5DEY9 (UniProtKB/TrEMBL), F7FDK7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVRRGLVGWISRVVILLVLLCCAISVLYMLACTPKGDQEQLGLPRANGPTGKDGYQAVLQEREE
QHRNYVNSLKRQIAQLKDELQARSEQLRSGQDQASDATSLRSGWDPEPKAQADILAFLRGQVDK
AEVHAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALESLNSP
VESSPHQRPYTAADFIEGIYRTERDKGTLYELTFKGDHKHEFQRLVLFRPFGPIMKVKKEKLNM
ANTLINVIVPLARRVDKFRHFMQNFREMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANF
RNFTFIQLNGEFSRGKGLDVGARFWKGSNVVLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVL
FSQYNPGIIYGHHDAVPALEQQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGED
VHLYRKYLHSNLIVIRTPVRGLFHLWHEKHCMDELTPEQYRMCMQSKAMNEASHGQLGMLVFRH
EIEAHLRKQKLKASSKKT

hide sequence

RefSeq Acc Id:	XP_006253090 ⟸ XM_006253028
- Peptide Label:	isoform X1
- UniProtKB:	B5DEY9 (UniProtKB/TrEMBL), F7FDK7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVRRGLVGWISRVVILLVLLCCAISVLYMLACTPKGDQEQLGLPRANGPTGKDGYQAVLQEREE QHRNYVNSLKRQIAQLKDELQARSEQLRSGQDQASDATSLRSGWDPEPKAQADILAFLRGQVDK AEVHAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALESLNSP VESSPHQRPYTAADFIEGIYRTERDKGTLYELTFKGDHKHEFQRLVLFRPFGPIMKVKKEKLNM ANTLINVIVPLARRVDKFRHFMQNFREMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANF RNFTFIQLNGEFSRGKGLDVGARFWKGSNVVLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVL FSQYNPGIIYGHHDAVPALEQQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGED VHLYRKYLHSNLIVIRTPVRGLFHLWHEKHCMDELTPEQYRMCMQSKAMNEASHGQLGMLVFRH EIEAHLRKQKLKASSKKT hide sequence

RefSeq Acc Id:	XP_006253091 ⟸ XM_006253029
- Peptide Label:	isoform X1
- UniProtKB:	B5DEY9 (UniProtKB/TrEMBL), F7FDK7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVRRGLVGWISRVVILLVLLCCAISVLYMLACTPKGDQEQLGLPRANGPTGKDGYQAVLQEREE QHRNYVNSLKRQIAQLKDELQARSEQLRSGQDQASDATSLRSGWDPEPKAQADILAFLRGQVDK AEVHAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALESLNSP VESSPHQRPYTAADFIEGIYRTERDKGTLYELTFKGDHKHEFQRLVLFRPFGPIMKVKKEKLNM ANTLINVIVPLARRVDKFRHFMQNFREMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANF RNFTFIQLNGEFSRGKGLDVGARFWKGSNVVLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVL FSQYNPGIIYGHHDAVPALEQQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGED VHLYRKYLHSNLIVIRTPVRGLFHLWHEKHCMDELTPEQYRMCMQSKAMNEASHGQLGMLVFRH EIEAHLRKQKLKASSKKT hide sequence

RefSeq Acc Id:	XP_006253089 ⟸ XM_006253027
- Peptide Label:	isoform X1
- UniProtKB:	B5DEY9 (UniProtKB/TrEMBL), F7FDK7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVRRGLVGWISRVVILLVLLCCAISVLYMLACTPKGDQEQLGLPRANGPTGKDGYQAVLQEREE QHRNYVNSLKRQIAQLKDELQARSEQLRSGQDQASDATSLRSGWDPEPKAQADILAFLRGQVDK AEVHAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALESLNSP VESSPHQRPYTAADFIEGIYRTERDKGTLYELTFKGDHKHEFQRLVLFRPFGPIMKVKKEKLNM ANTLINVIVPLARRVDKFRHFMQNFREMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANF RNFTFIQLNGEFSRGKGLDVGARFWKGSNVVLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVL FSQYNPGIIYGHHDAVPALEQQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGED VHLYRKYLHSNLIVIRTPVRGLFHLWHEKHCMDELTPEQYRMCMQSKAMNEASHGQLGMLVFRH EIEAHLRKQKLKASSKKT hide sequence

RefSeq Acc Id:

XP_008769336 ⟸ XM_008771114

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVRRGLVGWISRVVILLVLLCCAISVLYMLACTPKGDQEQLGLPRANGPTGKDGYQAVLQEREE
QHRNYVNSLKRQIAQLKDELQARSEQLRSGQDQASDATSLRSGWDPEPKAQADILAFLRGQVDK
AEVHAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALESLNSP
VESSPHQRPYTAADFIEGIYRTERDKGTLYELTFKGDHKHEFQRLVLFRPFGPIMKVKKEKLNM
ANTLINVIVPLARRVDKFRHFMQNFREMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANF
RNFTFIQLNGEFSRGKGLDVGARFWKGSNVVLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVL
FSQYNPGIIYGHHDAVPALEQQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGED
VHLYRKYLHSNLIVIRTPVRGLFHLWHEKHCMDELTPEQYRMCMQSKAMNEASHGQLGMLVFRH
EIEAHLRKQKLKASSKKT

hide sequence

RefSeq Acc Id:	XP_008769338 ⟸ XM_008771116
- Peptide Label:	isoform X1
- UniProtKB:	B5DEY9 (UniProtKB/TrEMBL), F7FDK7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVRRGLVGWISRVVILLVLLCCAISVLYMLACTPKGDQEQLGLPRANGPTGKDGYQAVLQEREE QHRNYVNSLKRQIAQLKDELQARSEQLRSGQDQASDATSLRSGWDPEPKAQADILAFLRGQVDK AEVHAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALESLNSP VESSPHQRPYTAADFIEGIYRTERDKGTLYELTFKGDHKHEFQRLVLFRPFGPIMKVKKEKLNM ANTLINVIVPLARRVDKFRHFMQNFREMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANF RNFTFIQLNGEFSRGKGLDVGARFWKGSNVVLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVL FSQYNPGIIYGHHDAVPALEQQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGED VHLYRKYLHSNLIVIRTPVRGLFHLWHEKHCMDELTPEQYRMCMQSKAMNEASHGQLGMLVFRH EIEAHLRKQKLKASSKKT hide sequence

RefSeq Acc Id:

XP_017455585 ⟸ XM_017600096

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVRRGLVGWISRVVILLVLLCCAISVLYMLACTPKGDQEQLGLPRANGPTGKDGYQAVLQEREE
QHRNYVNSLKRQIAQLKDELQARSEQLRSGQDQASDATSLRSGWDPEPKAQADILAFLRGQVDK
AEVHAGVKLATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALESLNSP
VESSPHQRPYTAADFIEGIYRTERDKGTLYELTFKGDHKHEFQRLVLFRPFGPIMKVKKEKLNM
ANTLINVIVPLARRVDKFRHFMQNFREMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANF
RNFTFIQLNGEFSRGKGLDVGARFWKGSNVVLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVL
FSQYNPGIIYGHHDAVPALEQQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGED
VHLYRKYLHSNLIVIRTPVRGLFHLWHEKHCMDELTPEQYRMCMQSKAMNEASHGQLGMLVFRH
EIEAHLRKQKLKASSKKT

hide sequence

Ensembl Acc Id:

ENSRNOP00000017822 ⟸ ENSRNOT00000017822

RefSeq Acc Id:	XP_038950422 ⟸ XM_039094494
- Peptide Label:	isoform X1
- UniProtKB:	B5DEY9 (UniProtKB/TrEMBL), F7FDK7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038950423 ⟸ XM_039094495
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063131449 ⟸ XM_063275379
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000098230 ⟸ ENSRNOT00000120590

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DEY9-F1-model_v2	AlphaFold	B5DEY9	1-530	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307618	AgrOrtholog
BioCyc Gene	G2FUF-11691	BioCyc
Ensembl Genes	ENSRNOG00000013024	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000120590	ENTREZGENE
	ENSRNOT00000120590.2	UniProtKB/TrEMBL
Gene3D-CATH	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/TrEMBL
InterPro	Chond_GalNAc	UniProtKB/TrEMBL
	CS_glycosyltransferase	UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/TrEMBL
KEGG Report	rno:306375	UniProtKB/TrEMBL
NCBI Gene	306375	ENTREZGENE
PANTHER	CHONDROITIN SULFATE N-ACETYLGALACTOSAMINYLTRANSFERASE 1	UniProtKB/TrEMBL
	CHONDROITIN SYNTHASE	UniProtKB/TrEMBL
Pfam	CHGN	UniProtKB/TrEMBL
PhenoGen	Csgalnact1	PhenoGen
RatGTEx	ENSRNOG00000013024	RatGTEx
Superfamily-SCOP	SSF53448	UniProtKB/TrEMBL
UniProt	A0ABK0L379_RAT	UniProtKB/TrEMBL
	B5DEY9	ENTREZGENE
	F7FDK7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-19	Csgalnact1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	Chgn	chondroitin beta1,4 N-acetylgalactosaminyltransferase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Chgn	chondroitin beta1,4 N-acetylgalactosaminyltransferase	RGD1307618_predicted	similar to chondroitin beta1,4 N-acetylgalactosaminyltransferase (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1307618_predicted	similar to chondroitin beta1,4 N-acetylgalactosaminyltransferase (predicted)	LOC306375_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC306375_predicted	similar to chondroitin beta1,4 N-acetylgalactosaminyltransferase (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)

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Imported Annotations - KEGG (archival)