Ube2f (ubiquitin-conjugating enzyme E2F (putative)) - Rat Genome Database

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Gene: Ube2f (ubiquitin-conjugating enzyme E2F (putative)) Rattus norvegicus
Analyze
Symbol: Ube2f
Name: ubiquitin-conjugating enzyme E2F (putative)
RGD ID: 1307608
Description: Predicted to enable NEDD8 conjugating enzyme activity. Predicted to be involved in protein neddylation. Predicted to act upstream of or within defense response to virus; innate immune response; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human UBE2F (ubiquitin conjugating enzyme E2 F (putative)); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363284; MGC105540; NEDD8 carrier protein UBE2F; NEDD8 protein ligase UBE2F; NEDD8-conjugating enzyme UBE2F; RGD1307608; RING-type E3 NEDD8 transferase UBE2F; similar to RIKEN cDNA 2510010F15; ubiquitin-conjugating enzyme E2 F
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,293,506 - 99,328,690 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl999,293,515 - 99,330,479 (+)EnsemblGRCr8
mRatBN7.2991,845,975 - 91,881,145 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl991,845,987 - 91,880,594 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9100,272,736 - 100,307,910 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,408,500 - 105,443,674 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09103,772,186 - 103,807,364 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,394,112 - 98,428,684 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,398,128 - 98,428,128 (+)Ensemblrn6Rnor6.0
Rnor_5.0998,070,661 - 98,105,959 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4990,480,334 - 90,515,912 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera989,387,935 - 89,422,442 (+)NCBICelera
RGSC_v3.1990,685,102 - 90,720,680 (+)NCBI
Cytogenetic Map9q36NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
protein neddylation  (IBA,IEA,ISO,ISS)

Cellular Component
cytosol  (IBA)
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19250909  


Genomics

Comparative Map Data
Ube2f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,293,506 - 99,328,690 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl999,293,515 - 99,330,479 (+)EnsemblGRCr8
mRatBN7.2991,845,975 - 91,881,145 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl991,845,987 - 91,880,594 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx9100,272,736 - 100,307,910 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,408,500 - 105,443,674 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09103,772,186 - 103,807,364 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,394,112 - 98,428,684 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,398,128 - 98,428,128 (+)Ensemblrn6Rnor6.0
Rnor_5.0998,070,661 - 98,105,959 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4990,480,334 - 90,515,912 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera989,387,935 - 89,422,442 (+)NCBICelera
RGSC_v3.1990,685,102 - 90,720,680 (+)NCBI
Cytogenetic Map9q36NCBI
UBE2F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,967,014 - 238,042,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,966,827 - 238,045,486 (+)Ensemblhg38GRCh38
GRCh372238,875,656 - 238,951,423 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,540,439 - 238,615,423 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2232,588,691 - 232,663,675 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2230,667,560 - 230,743,407 (+)NCBIHuRef
CHM1_12238,881,335 - 238,957,233 (+)NCBICHM1_1
T2T-CHM13v2.02238,457,016 - 238,532,785 (+)NCBIT2T-CHM13v2.0
Ube2f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,177,412 - 91,214,243 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl191,178,026 - 91,218,059 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38191,249,690 - 91,286,521 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,250,304 - 91,290,337 (+)Ensemblmm10GRCm38
MGSCv37193,146,896 - 93,182,602 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36193,080,972 - 93,116,330 (+)NCBIMGSCv36mm8
Celera194,187,788 - 94,223,112 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.08NCBI
Ube2f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555422,480,455 - 2,515,986 (-)Ensembl
ChiLan1.0NW_0049555422,480,455 - 2,515,982 (-)NCBIChiLan1.0ChiLan1.0
UBE2F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213140,598,262 - 140,673,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B140,613,242 - 140,688,205 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B125,198,590 - 125,274,112 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B244,050,520 - 244,125,333 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B244,050,518 - 244,125,333 (+)EnsemblpanPan2panpan1.1
UBE2F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12548,503,866 - 48,558,950 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2548,503,833 - 48,558,986 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2548,999,886 - 49,055,746 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02548,889,166 - 48,945,023 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2548,889,191 - 48,944,533 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12548,764,541 - 48,820,382 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02548,553,112 - 48,610,715 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02548,785,596 - 48,841,485 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ube2f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303190,466,839 - 190,522,663 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936525418,554 - 472,863 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936525418,554 - 472,850 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115137,567,250 - 137,620,586 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215151,976,738 - 152,030,117 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110123,984,075 - 124,063,747 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604075,352,398 - 75,426,824 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube2f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248473,213,196 - 3,253,407 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248473,213,455 - 3,253,049 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ube2f
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14163,251,524 - 163,286,835 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ube2f
266 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:433
Count of miRNA genes:202
Interacting mature miRNAs:227
Transcripts:ENSRNOT00000027050, ENSRNOT00000042082
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat

Markers in Region
AA955633  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2991,880,131 - 91,880,356 (+)MAPPERmRatBN7.2
Rnor_6.0998,428,262 - 98,428,486NCBIRnor6.0
Rnor_5.0998,104,941 - 98,105,165UniSTSRnor5.0
RGSC_v3.4990,515,490 - 90,515,714UniSTSRGSC3.4
Celera989,422,020 - 89,422,244UniSTS
RH 3.4 Map9784.99UniSTS
Cytogenetic Map9q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001008381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000027050   ⟹   ENSRNOP00000027050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl999,293,795 - 99,324,982 (+)Ensembl
mRatBN7.2 Ensembl991,846,009 - 91,880,423 (+)Ensembl
Rnor_6.0 Ensembl998,398,128 - 98,428,128 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000042082   ⟹   ENSRNOP00000040354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl999,293,515 - 99,328,226 (+)Ensembl
mRatBN7.2 Ensembl991,846,038 - 91,880,551 (+)Ensembl
Rnor_6.0 Ensembl998,398,128 - 98,428,128 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100973   ⟹   ENSRNOP00000080917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,846,034 - 91,878,442 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116409   ⟹   ENSRNOP00000094106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,845,987 - 91,880,594 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000137103   ⟹   ENSRNOP00000110584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl999,297,538 - 99,330,479 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000170276   ⟹   ENSRNOP00000099170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl999,293,530 - 99,330,479 (+)Ensembl
RefSeq Acc Id: NM_001008381   ⟹   NP_001008382
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,515 - 99,328,685 (+)NCBI
mRatBN7.2991,845,975 - 91,881,145 (+)NCBI
Rnor_6.0998,394,168 - 98,428,684 (+)NCBI
Rnor_5.0998,070,661 - 98,105,959 (+)NCBI
RGSC_v3.4990,480,334 - 90,515,912 (+)RGD
Celera989,387,935 - 89,422,442 (+)RGD
Sequence:
RefSeq Acc Id: NM_001399154   ⟹   NP_001386083
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,515 - 99,328,685 (+)NCBI
mRatBN7.2991,845,975 - 91,881,145 (+)NCBI
RefSeq Acc Id: NM_001399155   ⟹   NP_001386084
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,515 - 99,328,685 (+)NCBI
mRatBN7.2991,845,975 - 91,881,145 (+)NCBI
RefSeq Acc Id: NM_001399156   ⟹   NP_001386085
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,515 - 99,328,685 (+)NCBI
mRatBN7.2991,845,975 - 91,881,145 (+)NCBI
RefSeq Acc Id: NM_001399157   ⟹   NP_001386086
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,515 - 99,328,685 (+)NCBI
mRatBN7.2991,845,975 - 91,881,145 (+)NCBI
RefSeq Acc Id: NM_001399158   ⟹   NP_001386087
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,515 - 99,328,685 (+)NCBI
mRatBN7.2991,845,975 - 91,881,145 (+)NCBI
RefSeq Acc Id: NM_001399159   ⟹   NP_001386088
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,515 - 99,328,685 (+)NCBI
mRatBN7.2991,845,975 - 91,881,145 (+)NCBI
RefSeq Acc Id: NM_001399172   ⟹   NP_001386101
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,515 - 99,328,685 (+)NCBI
mRatBN7.2991,845,975 - 91,881,145 (+)NCBI
RefSeq Acc Id: XM_006245423   ⟹   XP_006245485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,904 - 99,328,690 (+)NCBI
mRatBN7.2991,846,364 - 91,880,554 (+)NCBI
Rnor_6.0998,394,303 - 98,428,684 (+)NCBI
Rnor_5.0998,070,661 - 98,105,959 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596539   ⟹   XP_017452028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,871 - 99,328,690 (+)NCBI
mRatBN7.2991,846,331 - 91,880,554 (+)NCBI
Rnor_6.0998,394,303 - 98,428,684 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083920   ⟹   XP_038939848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,907 - 99,328,690 (+)NCBI
mRatBN7.2991,846,365 - 91,880,554 (+)NCBI
RefSeq Acc Id: XM_063267453   ⟹   XP_063123523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,887 - 99,328,690 (+)NCBI
RefSeq Acc Id: XM_063267454   ⟹   XP_063123524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,506 - 99,328,140 (+)NCBI
RefSeq Acc Id: XM_063267455   ⟹   XP_063123525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,293,506 - 99,328,140 (+)NCBI
RefSeq Acc Id: NP_001008382   ⟸   NM_001008381
- Peptide Label: isoform 3
- UniProtKB: A0A8I6ALE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245485   ⟸   XM_006245423
- Peptide Label: isoform X1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot),   A6JQQ2 (UniProtKB/TrEMBL),   A0A8I6ALE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452028   ⟸   XM_017596539
- Peptide Label: isoform X1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot),   A6JQQ2 (UniProtKB/TrEMBL),   A0A8I6ALE6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000040354   ⟸   ENSRNOT00000042082
Ensembl Acc Id: ENSRNOP00000027050   ⟸   ENSRNOT00000027050
RefSeq Acc Id: XP_038939848   ⟸   XM_039083920
- Peptide Label: isoform X1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot),   A6JQQ2 (UniProtKB/TrEMBL),   A0A8I6ALE6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094106   ⟸   ENSRNOT00000116409
Ensembl Acc Id: ENSRNOP00000080917   ⟸   ENSRNOT00000100973
RefSeq Acc Id: NP_001386085   ⟸   NM_001399156
- Peptide Label: isoform 1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot),   A6JQQ2 (UniProtKB/TrEMBL),   A0A8I6ALE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386084   ⟸   NM_001399155
- Peptide Label: isoform 1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot),   A6JQQ2 (UniProtKB/TrEMBL),   A0A8I6ALE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386086   ⟸   NM_001399157
- Peptide Label: isoform 2
- UniProtKB: A6JQQ3 (UniProtKB/TrEMBL),   A0A8I6ALE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386087   ⟸   NM_001399158
- Peptide Label: isoform 4
- UniProtKB: A0A8I6ALE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386083   ⟸   NM_001399154
- Peptide Label: isoform 1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot),   A6JQQ2 (UniProtKB/TrEMBL),   A0A8I6ALE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386088   ⟸   NM_001399159
- Peptide Label: isoform 4
- UniProtKB: A0A8I6ALE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386101   ⟸   NM_001399172
- Peptide Label: isoform 5
RefSeq Acc Id: XP_063123524   ⟸   XM_063267454
- Peptide Label: isoform X2
- UniProtKB: A6JQQ3 (UniProtKB/TrEMBL),   A0A8I6ALE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123525   ⟸   XM_063267455
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ALE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123523   ⟸   XM_063267453
- Peptide Label: isoform X1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot),   A6JQQ2 (UniProtKB/TrEMBL),   A0A8I6ALE6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110584   ⟸   ENSRNOT00000137103
Ensembl Acc Id: ENSRNOP00000099170   ⟸   ENSRNOT00000170276
Protein Domains
UBC core

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U203-F1-model_v2 AlphaFold Q5U203 1-185 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307608 AgrOrtholog
BioCyc Gene G2FUF-26724 BioCyc
Ensembl Genes ENSRNOG00000019953 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000027050 ENTREZGENE
  ENSRNOT00000027050.8 UniProtKB/Swiss-Prot
  ENSRNOT00000042082 ENTREZGENE
  ENSRNOT00000042082.5 UniProtKB/Swiss-Prot
  ENSRNOT00000137103 ENTREZGENE
  ENSRNOT00000170276 ENTREZGENE
Gene3D-CATH 3.10.110.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7303709 IMAGE-MGC_LOAD
InterPro Ub_conjugating_enzyme UniProtKB/Swiss-Prot
  UBQ-conjugat_E2 UniProtKB/Swiss-Prot
  UBQ-conjugating_AS UniProtKB/Swiss-Prot
  UBQ-conjugating_enzyme/RWD UniProtKB/Swiss-Prot
KEGG Report rno:363284 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105540 IMAGE-MGC_LOAD
NCBI Gene 363284 ENTREZGENE
PANTHER UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/Swiss-Prot
Pfam UQ_con UniProtKB/Swiss-Prot
PhenoGen Ube2f PhenoGen
PROSITE UBIQUITIN_CONJUGAT_1 UniProtKB/Swiss-Prot
  UBIQUITIN_CONJUGAT_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000019953 RatGTEx
SMART UBCc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54495 UniProtKB/Swiss-Prot
UniProt A0A8I6ALE6 ENTREZGENE
  A0ABK0LI87_RAT UniProtKB/TrEMBL
  A6JQQ2 ENTREZGENE, UniProtKB/TrEMBL
  A6JQQ3 ENTREZGENE, UniProtKB/TrEMBL
  Q5U203 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Ube2f  ubiquitin-conjugating enzyme E2F (putative)  RGD1307608  similar to RIKEN cDNA 2510010F15  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1307608  similar to RIKEN cDNA 2510010F15  RGD1307608_predicted  similar to RIKEN cDNA 2510010F15 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307608_predicted  similar to RIKEN cDNA 2510010F15 (predicted)  LOC363284_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC363284_predicted  similar to RIKEN cDNA 2510010F15 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL