Advanced Search (OLGA)

Gene: Eva1c (eva-1 homolog C) Rattus norvegicus

Analyze

Symbol:

Eva1c

Name:

eva-1 homolog C

RGD ID:

1307569

Description:

Predicted to enable heparin binding activity. Predicted to be located in membrane. Predicted to colocalize with extracellular region. Orthologous to human EVA1C (eva-1 homolog C); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

eva-1 homolog C (C. elegans); Fam176c; family with sequence similarity 176, member C; LOC360695; RGD1307569; similar to Protein C21orf63 homolog precursor

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EVA1C (eva-1 homolog C)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Eva1c (eva-1 homolog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Eva1c (eva-1 homolog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EVA1C (eva-1 homolog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EVA1C (eva-1 homolog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Eva1c (eva-1 homolog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EVA1C (eva-1 homolog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EVA1C (eva-1 homolog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Eva1c (eva-1 homolog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Eva1c (eva-1 homolog C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	EVA1C (eva-1 homolog C)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Eva1c (eva-1 homolog C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	eva1c (eva-1 homolog C (C. elegans))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG42402	Alliance	DIOPT (OrthoFinder\|OrthoInspector)
Drosophila melanogaster (fruit fly):	CG42402	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	eva-1	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	eva-1	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	eva1c	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	eva1c	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	43,575,613 - 43,649,677 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	43,576,332 - 43,649,834 (+)	Ensembl				GRCr8
mRatBN7.2	11	30,089,510 - 30,163,596 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,089,365 - 30,163,596 (+)	Ensembl				mRatBN7.2
Rnor_6.0	11	31,001,697 - 31,075,784 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,002,451 - 31,075,809 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	34,613,264 - 34,687,258 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	30,818,803 - 30,891,855 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	29,757,158 - 29,831,194 (+)	NCBI		Celera
RGSC_v3.1	11	30,818,630 - 30,891,737 (+)	NCBI
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',5-triiodo-L-thyronine (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

antirheumatic drug (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

cadmium dichloride (ISO)

chlordecone (ISO)

chloroprene (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

fonofos (ISO)

furan (EXP)

hydroxyurea (ISO)

manganese(II) chloride (EXP)

methapyrilene (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel sulfate (ISO)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

rotenone (EXP)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

temozolomide (ISO)

terbufos (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thiram (ISO)

tributylstannane (EXP)

trichloroethene (EXP)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

extracellular region (IBA,IEA,ISO)

membrane (IEA)

Molecular Function

carbohydrate binding (IEA)

heparin binding (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19470522

Genomics

Comparative Map Data

Eva1c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	43,575,613 - 43,649,677 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	43,576,332 - 43,649,834 (+)	Ensembl				GRCr8
mRatBN7.2	11	30,089,510 - 30,163,596 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,089,365 - 30,163,596 (+)	Ensembl				mRatBN7.2
Rnor_6.0	11	31,001,697 - 31,075,784 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,002,451 - 31,075,809 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	34,613,264 - 34,687,258 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	30,818,803 - 30,891,855 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	29,757,158 - 29,831,194 (+)	NCBI		Celera
RGSC_v3.1	11	30,818,630 - 30,891,737 (+)	NCBI
Cytogenetic Map	11	q11	NCBI

EVA1C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	32,411,723 - 32,515,387 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	32,411,710 - 32,517,158 (+)	Ensembl			hg38	GRCh38
GRCh37	21	33,784,031 - 33,887,697 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	32,706,623 - 32,809,568 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	21	32,706,622 - 32,809,568	NCBI
Celera	21	18,968,379 - 19,071,327 (+)	NCBI		Celera
Cytogenetic Map	21	q22.11	NCBI
HuRef	21	19,193,621 - 19,296,983 (+)	NCBI		HuRef
CHM1_1	21	33,346,618 - 33,449,422 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	30,781,530 - 30,885,679 (+)	NCBI		T2T-CHM13v2.0

Eva1c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	90,623,607 - 90,701,997 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	90,623,607 - 90,701,997 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	90,826,719 - 90,905,109 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	90,826,719 - 90,905,109 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	90,831,358 - 90,904,940 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	90,715,578 - 90,793,968 (+)	NCBI		MGSCv36	mm8
MGSCv36	16	91,497,214 - 91,571,089 (+)	NCBI		MGSCv36	mm8
Celera	16	91,912,329 - 91,986,753 (+)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	52.02	NCBI

Eva1c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	31,934,965 - 32,044,228 (+)	Ensembl
ChiLan1.0	NW_004955407	31,934,954 - 32,043,827 (+)	NCBI	ChiLan1.0	ChiLan1.0

EVA1C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	28,529,545 - 28,635,687 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	23,389,541 - 23,492,275 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	18,778,766 - 18,881,877 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	32,160,420 - 32,260,968 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	32,160,420 - 32,260,968 (+)	Ensembl			panPan2	panpan1.1

EVA1C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	27,176,246 - 27,256,810 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	27,177,136 - 27,256,293 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	27,171,143 - 27,250,014 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	27,296,662 - 27,376,978 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	27,297,414 - 27,376,467 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	27,241,798 - 27,321,809 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	27,253,329 - 27,333,645 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	27,760,871 - 27,840,881 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Eva1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	27,764,993 - 27,847,927 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	9,619,904 - 9,702,356 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	9,621,221 - 9,704,793 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EVA1C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	196,067,669 - 196,173,198 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	196,067,643 - 196,172,673 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	206,114,917 - 206,184,980 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EVA1C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	59,612,527 - 59,717,315 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	59,611,890 - 59,716,572 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	2,149,759 - 2,258,262 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Eva1c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	20,747,018 - 20,835,259 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	20,746,101 - 20,835,142 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Eva1c
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	53,677,634 - 53,750,968 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Eva1c
528 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	152
Count of miRNA genes:	86
Interacting mature miRNAs:	88
Transcripts:	ENSRNOT00000002838, ENSRNOT00000065991, ENSRNOT00000072253
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	33306008	78306008	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	3818154	48818154	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	33306008	78306008	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	10806125	55806125	Rat
634341	Bw121	Body weight QTL 121	3.56		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	11	35323199	55805892	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	29958996	57754989	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	31915469	76915469	Rat
2290451	Scl58	Serum cholesterol level QTL 58	3.48		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	11	26318031	55806125	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	36428416	81428416	Rat
1600394	Edcs1	Endometrial carcinoma susceptibility QTL1	2.9	0.04	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	11	12823152	57823152	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	34618760	79618760	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	36749459	81749459	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	36749459	81749459	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
631510	Spl2	Serum phospholipid level QTL 2	4.1		blood phospholipid amount (VT:0006084)	serum phospholipid level (CMO:0001171)	11	27556685	72556685	Rat

Markers in Region

D11Mit2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	11	43,646,076 - 43,646,338 (+)	Marker Load Pipeline
mRatBN7.2	11	30,159,995 - 30,160,257 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	31,072,184 - 31,072,445	NCBI	Rnor6.0
Rnor_5.0	11	34,683,658 - 34,683,919	UniSTS	Rnor5.0
RGSC_v3.4	11	30,888,233 - 30,888,495	RGD	RGSC3.4
RGSC_v3.4	11	30,888,234 - 30,888,495	UniSTS	RGSC3.4
Celera	11	29,827,596 - 29,827,857	UniSTS
RGSC_v3.1	11	30,888,130 - 30,888,489	RGD
RH 3.4 Map	11	182.7	UniSTS
RH 3.4 Map	11	182.7	RGD
RH 2.0 Map	11	472.1	RGD
Cytogenetic Map	11	q11	UniSTS

D11Rat16

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	11	43,571,784 - 43,571,935 (+)	Marker Load Pipeline
mRatBN7.2	11	30,085,696 - 30,085,847 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	30,997,892 - 30,998,042	NCBI	Rnor6.0
Rnor_5.0	11	34,609,367 - 34,609,517	UniSTS	Rnor5.0
RGSC_v3.4	11	30,813,941 - 30,814,092	RGD	RGSC3.4
RGSC_v3.4	11	30,813,942 - 30,814,092	UniSTS	RGSC3.4
Celera	11	29,753,353 - 29,753,503	UniSTS
RGSC_v3.1	11	30,813,904 - 30,814,055	RGD
RH 3.4 Map	11	177.5	RGD
RH 3.4 Map	11	177.5	UniSTS
RH 2.0 Map	11	467.8	RGD
SHRSP x BN Map	11	8.1899	RGD
FHH x ACI Map	11	12.19	RGD
Cytogenetic Map	11	q11	UniSTS

D11Got23

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	30,159,985 - 30,160,184 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	31,072,174 - 31,072,372	NCBI	Rnor6.0
Rnor_5.0	11	34,683,648 - 34,683,846	UniSTS	Rnor5.0
RGSC_v3.4	11	30,888,223 - 30,888,422	RGD	RGSC3.4
RGSC_v3.4	11	30,888,224 - 30,888,422	UniSTS	RGSC3.4
Celera	11	29,827,586 - 29,827,784	UniSTS
RGSC_v3.1	11	30,888,131 - 30,888,329	RGD
RH 3.4 Map	11	187.3	UniSTS
RH 3.4 Map	11	187.3	RGD
RH 2.0 Map	11	478.2	RGD
Cytogenetic Map	11	q11	UniSTS

D11Got21

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	11	43,605,910 - 43,606,098 (+)	Marker Load Pipeline
mRatBN7.2	11	30,119,825 - 30,120,013 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	31,032,018 - 31,032,205	NCBI	Rnor6.0
Rnor_5.0	11	34,643,493 - 34,643,680	UniSTS	Rnor5.0
RGSC_v3.4	11	30,848,067 - 30,848,255	RGD	RGSC3.4
RGSC_v3.4	11	30,848,068 - 30,848,255	UniSTS	RGSC3.4
Celera	11	29,787,476 - 29,787,661	UniSTS
RGSC_v3.1	11	30,848,031 - 30,848,218	RGD
RH 3.4 Map	11	196.3	UniSTS
RH 3.4 Map	11	196.3	RGD
Cytogenetic Map	11	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	153	91	90	59	47	59	6	309	147	11	132	79	92	31	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_190991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_190992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001073261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_340966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002838 ⟹ ENSRNOP00000002838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	43,576,332 - 43,649,834 (+)	Ensembl
mRatBN7.2 Ensembl	11	30,089,365 - 30,163,596 (+)	Ensembl
Rnor_6.0 Ensembl	11	31,002,451 - 31,075,809 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097243 ⟹ ENSRNOP00000085207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	43,576,332 - 43,649,693 (+)	Ensembl
mRatBN7.2 Ensembl	11	30,089,365 - 30,163,596 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098199 ⟹ ENSRNOP00000080620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	43,576,332 - 43,649,693 (+)	Ensembl
mRatBN7.2 Ensembl	11	30,089,826 - 30,163,596 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113909 ⟹ ENSRNOP00000088246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	43,576,542 - 43,649,693 (+)	Ensembl
mRatBN7.2 Ensembl	11	30,125,085 - 30,163,596 (+)	Ensembl

RefSeq Acc Id:

XM_017598089 ⟹ XP_017453578

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	43,575,623 - 43,649,677 (+)	NCBI
mRatBN7.2	11	30,089,517 - 30,163,596 (+)	NCBI
Rnor_6.0	11	31,001,697 - 31,075,784 (+)	NCBI

Sequence:

show sequence

GGGTGAACTTGGCAAGCCCTCCCGGCGGTGGATGAGGAACACTTTGTGCCGAGCGCCCGCCCGC
CCAGCCCTCCTCCTTCCCGCCGGCGCCGCGGGGCCTGGATGCCTGCGCTGTTTGTAGGTCTGGG
GTCTCAAGAAGCCGAGTACTTAGCACCTGTCCCGCAGCTCTGGACTCCCACTCTTTGTCCCCGG
GTGTCCTCACCGATCTACGGGTAGACACCGCGCGTGGTCAACAGGGTCATATAGATTCCGTGGC
CCATTTTAAAACAAAGCTCAATTATAAGCGCTGTTCATTCCAGCCCAGTTTCAGATCCCCGAGG
GCGCTGTCAACTAGAACCCACCGGAAGCTCCATCGGGGCAAATAGAACCGGGCTCGTAGCCTCG
TGATCAACCGGTTTGAGGCTATCAGCTCGTTCAGGTCCGGACTGCTAGAACCTAGGCAGATCTC
TGTGTGGTGGCCAGAGAGTTGAGGACCCAGTCTCCCATTTGGTGCGATCGGACGTACTGCGTGT
TTGGTAACTGAACATCAATCGCTGAAGGTGGCAGGGACAGTAATGCCTCTATCTCCGGGACCCC
CATCTTCCCATAATCTCCGCTCCCCTCTGGCCAGGACTGTACGCTGCTGCGTTGGTTCTAAAGT
GCGTCACGGACGGGCACCGGCCGCGCCGCTCCACCGGCCTGGGTGAGGTTGGCGCCGGGCCAGC
GCAGGCTGGGCCAGCAGCTCTTGGCCATCACCCCGCCTAGAGACCCGGGTGTGGAAAGCGCTCA
AGTTGCGCAGCATCGGGATCGCTGCTGGAGACGCTCTCCGCTAGGGGCTCGGCGCCCCGGATCG
GCCTCAGCAATGCTCCGGGGCACGAGGTGACACCCCCTAGACTCTCTAGGCTCTCTAGGCGCGT
GGAACCAGGGAGATTTCTTCAGAAGAAACTACGCCTCGGCCTCCCTGGGATCCTCGCCCCGCCC
CAGGTCTCCGCCCCCTCCCCTTGGCTTGGGATCCGGGACCCGGTGGCGACCGCCTAAGAAGCTC
CAGCAGACTGGACCAGGAGGCGGCAGGGGGCTGGGAGCCGGTGGCTACGGACTCGCCCCGCCAT
GTGACGCGATCCTCCTGCCTGCGATCCCAGCACCGGCGCCCGCGCCCAGCCGCGCCGCGCATCA
TGGTCTTGCCCGGACACCCGCGTCTGCCGCCCGGGCCACAGCCACCGCAGAATCCCGGCCTCCG
CAGGCAGGTAGAGCCTCCAGGGCAGCTTCTGCGCCTCTTCTACTGCACGGTCCTAGTGTGCTCC
AAAGAGACCTCCGCGCTCACCGATTTTTCCGGTTACTTAACCAAACTCCTGCAAAACCACACCG
CCTATGCCTGTGACGGGGACTATTTGAATCTGCAGTGTCCTCGGCATTCAACAATAAGTGTGCA
GTCGGCATTTTATGGGCAAGATTTCCAAAGGTGTAGCCCCCAGGAGCCCATCTCCCAGAGGGAA
GACAACTTGACCTGTGTGGCATCCACCGCTTTGCAGGTGCTGGACGAGTGCCAGAACCAGCGGG
CCTGCCACCTCCTGGTCAATAGCCGAGTCTTCGGACCTGACCTTTGTCCAGGAAGCAGTAAATA
CCTCCTGGTCTCCTTTAAATGCCAACCTAATGAGTTGAAAAACAAAACAGTGTGTGAAGACCAG
GAACTGAAGCTTCACTGCCACGGGTCCAAGTTTCTCAACATCTACTCTGCCGCCTACGGCCGGA
GGACCCAGCAGACAGACATCTGTTCCTCCGGGGCGGAGCTGCTGCCCCCCTTTGACTGCCTGTC
TTACACGGCTTCACAAGTCCTGTCCAGAAGGTGCTACGGGAAGCAGAGATGTAAGGTCCTCGTC
GATAATTACCACTTCGGAAGCCCATGTCTTCCCGGAGTGAAAAAATACCTCACTGTTGCCTACG
CGTGTGTTCCCAAGAACATACTCACGGCGGTTGACCCAGCCGTTGCTAACCTAAATCCCTCTCT
GAAGAAAGACGATGAATACGGTATAAAATTCAACCCAAGCGGATCGAGGGTTGTGCGGAAAGAT
GGCGTTATTGTCAGCAACTCTCTGGCTGCGTTTGCTTACATTCGAGCCCACCCCGAGAGAGCTG
CTCTGCTGTTCGTGTCTAGTGTCTGCATCGGCCTGTTCCTCACACTGTGTGCCCTGGTCATCAG
AGTGTCCTGCACCAAGGACTTCCAGGAGCTGAGGCAGGGGAGGGAGCACCTGGTGCAAGGGAGT
GACAAGGCGGAGGAGGACAGTGAGGAGGATGTGGAAGAGGAGGACTCCTCAGATTCTGAGTTTC
CTGTGGAATTGTCCAGGTTTTGTAGGACTACGTATCCAGCCTATAGCTCTATAGAAGCCGCTGA
GCTGGCAGAAAGGATTGAGCGCAGGGAGCAAATCATTCAAGAAATATGGATGAACAGTGGCCTA
GACTCCTCGCTCCCCAGGAACATGGGCCATTTCTACTGAAAACCAGATGCATCTGGATAAGATT
ATACTTTCTGAAGAAGGAAGGATCCAGAATGCGCTGTCTCCCCACCCTGTCCAGTTCTGGTCCA
CTTGTACCTTCTATGAAGGAGAACCTGTCATGTCATCCGAGATGGGTGAAGCCGGAAAGGTGTC
AAAGGGACACCTCACTGTTTACAGCACACCCTGGAATAAATTGGGAGGAAGACGTGGA

hide sequence

RefSeq Acc Id:

XM_017598090 ⟹ XP_017453579

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	43,575,626 - 43,649,677 (+)	NCBI
mRatBN7.2	11	30,089,522 - 30,163,596 (+)	NCBI
Rnor_6.0	11	31,001,704 - 31,075,784 (+)	NCBI

Sequence:

show sequence

CTTGGCAAGCCCTCCCGGCGGTGGATGAGGAACACTTTGTGCCGAGCGCCCGCCCGCCCAGCCC
TCCTCCTTCCCGCCGGCGCCGCGGGGCCTGGATGCCTGCGCTGTTTGTAGGTCTGGGGTCTCAA
GAAGCCGAGTACTTAGCACCTGTCCCGCAGCTCTGGACTCCCACTCTTTGTCCCCGGGTGTCCT
CACCGATCTACGGGTAGACACCGCGCGTGGTCAACAGGGTCATATAGATTCCGTGGCCCATTTT
AAAACAAAGCTCAATTATAAGCGCTGTTCATTCCAGCCCAGTTTCAGATCCCCGAGGGCGCTGT
CAACTAGAACCCACCGGAAGCTCCATCGGGGCAAATAGAACCGGGCTCGTAGCCTCGTGATCAA
CCGGTTTGAGGCTATCAGCTCGTTCAGGTCCGGACTGCTAGAACCTAGGCAGATCTCTGTGTGG
TGGCCAGAGAGTTGAGGACCCAGTCTCCCATTTGGTGCGATCGGACGTACTGCGTGTTTGGTAA
CTGAACATCAATCGCTGAAGGTGGCAGGGACAGTAATGCCTCTATCTCCGGGACCCCCATCTTC
CCATAATCTCCGCTCCCCTCTGGCCAGGACTGTACGCTGCTGCGTTGGTTCTAAAGTGCGTCAC
GGACGGGCACCGGCCGCGCCGCTCCACCGGCCTGGGTGAGGTTGGCGCCGGGCCAGCGCAGGCT
GGGCCAGCAGCTCTTGGCCATCACCCCGCCTAGAGACCCGGGTGTGGAAAGCGCTCAAGTTGCG
CAGCATCGGGATCGCTGCTGGAGACGCTCTCCGCTAGGGGCTCGGCGCCCCGGATCGGCCTCAG
CAATGCTCCGGGGCACGAGGTGACACCCCCTAGACTCTCTAGGCTCTCTAGGCGCGTGGAACCA
GGGAGATTTCTTCAGAAGAAACTACGCCTCGGCCTCCCTGGGATCCTCGCCCCGCCCCAGGTCT
CCGCCCCCTCCCCTTGGCTTGGGATCCGGGACCCGGTGGCGACCGCCTAAGAAGCTCCAGCAGA
CTGGACCAGGAGGCGGCAGGGGGCTGGGAGCCGGTGGCTACGGACTCGCCCCGCCATGTGACGC
GATCCTCCTGCCTGCGATCCCAGCACCGGCGCCCGCGCCCAGCCGCGCCGCGCATCATGGTCTT
GCCCGGACACCCGCGTCTGCCGCCCGGGCCACAGCCACCGCAGAATCCCGGCCTCCGCAGGCAG
GTAGAGCCTCCAGGGCAGCTTCTGCGCCTCTTCTACTGCACGGTCCTAGTGTGCTCCAAAGAGA
CCTCCGCGCTCACCGATTTTTCCGATGAGTTGAAAAACAAAACAGTGTGTGAAGACCAGGAACT
GAAGCTTCACTGCCACGGGTCCAAGTTTCTCAACATCTACTCTGCCGCCTACGGCCGGAGGACC
CAGCAGACAGACATCTGTTCCTCCGGGGCGGAGCTGCTGCCCCCCTTTGACTGCCTGTCTTACA
CGGCTTCACAAGTCCTGTCCAGAAGGTGCTACGGGAAGCAGAGATGTAAGGTCCTCGTCGATAA
TTACCACTTCGGAAGCCCATGTCTTCCCGGAGTGAAAAAATACCTCACTGTTGCCTACGCGTGT
GTTCCCAAGAACATACTCACGGCGGTTGACCCAGCCGTTGCTAACCTAAATCCCTCTCTGAAGA
AAGACGATGAATACGGTATAAAATTCAACCCAAGCGGATCGAGGGTTGTGCGGAAAGATGGCGT
TATTGTCAGCAACTCTCTGGCTGCGTTTGCTTACATTCGAGCCCACCCCGAGAGAGCTGCTCTG
CTGTTCGTGTCTAGTGTCTGCATCGGCCTGTTCCTCACACTGTGTGCCCTGGTCATCAGAGTGT
CCTGCACCAAGGACTTCCAGGAGCTGAGGCAGGGGAGGGAGCACCTGGTGCAAGGGAGTGACAA
GGCGGAGGAGGACAGTGAGGAGGATGTGGAAGAGGAGGACTCCTCAGATTCTGAGTTTCCTGTG
GAATTGTCCAGGTTTTGTAGGACTACGTATCCAGCCTATAGCTCTATAGAAGCCGCTGAGCTGG
CAGAAAGGATTGAGCGCAGGGAGCAAATCATTCAAGAAATATGGATGAACAGTGGCCTAGACTC
CTCGCTCCCCAGGAACATGGGCCATTTCTACTGAAAACCAGATGCATCTGGATAAGATTATACT
TTCTGAAGAAGGAAGGATCCAGAATGCGCTGTCTCCCCACCCTGTCCAGTTCTGGTCCACTTGT
ACCTTCTATGAAGGAGAACCTGTCATGTCATCCGAGATGGGTGAAGCCGGAAAGGTGTCAAAGG
GACACCTCACTGTTTACAGCACACCCTGGAATAAATTGGGAGGAAGACGTGGA

hide sequence

RefSeq Acc Id:

XM_039088774 ⟹ XP_038944702

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	43,575,613 - 43,649,677 (+)	NCBI
mRatBN7.2	11	30,089,510 - 30,163,002 (+)	NCBI

RefSeq Acc Id:

XM_340966 ⟹ XP_340967

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	43,575,625 - 43,649,677 (+)	NCBI
mRatBN7.2	11	30,089,519 - 30,163,596 (+)	NCBI
Rnor_6.0	11	31,001,698 - 31,075,784 (+)	NCBI
Rnor_5.0	11	34,613,264 - 34,687,258 (+)	NCBI
RGSC_v3.4	11	30,818,803 - 30,891,855 (+)	RGD

Sequence:

show sequence

GGTGAACTTGGCAAGCCCTCCCGGCGGTGGATGAGGAACACTTTGTGCCGAGCGCCCGCCCGCC
CAGCCCTCCTCCTTCCCGCCGGCGCCGCGGGGCCTGGATGCCTGCGCTGTTTGTAGGTCTGGGG
TCTCAAGAAGCCGAGTACTTAGCACCTGTCCCGCAGCTCTGGACTCCCACTCTTTGTCCCCGGG
TGTCCTCACCGATCTACGGGTAGACACCGCGCGTGGTCAACAGGGTCATATAGATTCCGTGGCC
CATTTTAAAACAAAGCTCAATTATAAGCGCTGTTCATTCCAGCCCAGTTTCAGATCCCCGAGGG
CGCTGTCAACTAGAACCCACCGGAAGCTCCATCGGGGCAAATAGAACCGGGCTCGTAGCCTCGT
GATCAACCGGTTTGAGGCTATCAGCTCGTTCAGGTCCGGACTGCTAGAACCTAGGCAGATCTCT
GTGTGGTGGCCAGAGAGTTGAGGACCCAGTCTCCCATTTGGTGCGATCGGACGTACTGCGTGTT
TGGTAACTGAACATCAATCGCTGAAGGTGGCAGGGACAGTAATGCCTCTATCTCCGGGACCCCC
ATCTTCCCATAATCTCCGCTCCCCTCTGGCCAGGACTGTACGCTGCTGCGTTGGTTCTAAAGTG
CGTCACGGACGGGCACCGGCCGCGCCGCTCCACCGGCCTGGGTGAGGTTGGCGCCGGGCCAGCG
CAGGCTGGGCCAGCAGCTCTTGGCCATCACCCCGCCTAGAGACCCGGGTGTGGAAAGCGCTCAA
GTTGCGCAGCATCGGGATCGCTGCTGGAGACGCTCTCCGCTAGGGGCTCGGCGCCCCGGATCGG
CCTCAGCAATGCTCCGGGGCACGAGGTGACACCCCCTAGACTCTCTAGGCTCTCTAGGCGCGTG
GAACCAGGGAGATTTCTTCAGAAGAAACTACGCCTCGGCCTCCCTGGGATCCTCGCCCCGCCCC
AGGTCTCCGCCCCCTCCCCTTGGCTTGGGATCCGGGACCCGGTGGCGACCGCCTAAGAAGCTCC
AGCAGACTGGACCAGGAGGCGGCAGGGGGCTGGGAGCCGGTGGCTACGGACTCGCCCCGCCATG
TGACGCGATCCTCCTGCCTGCGATCCCAGCACCGGCGCCCGCGCCCAGCCGCGCCGCGCATCAT
GGTCTTGCCCGGACACCCGCGTCTGCCGCCCGGGCCACAGCCACCGCAGAATCCCGGCCTCCGC
AGGCAGGTAGAGCCTCCAGGGCAGCTTCTGCGCCTCTTCTACTGCACGGTCCTAGTGTGCTCCA
AAGAGACCTCCGCGCTCACCGATTTTTCCGGTTACTTAACCAAACTCCTGCAAAACCACACCGC
CTATGCCTGTGACGGGGACTATTTGAATCTGCAGTGTCCTCGGCATTCAACAATAAGTGTGCAG
TCGGCATTTTATGGGCAAGATTTCCAAAGGTGTAGCCCCCAGGAGCCCATCTCCCAGAGGGAAG
ACAACTTGACCTGTGTGGCATCCACCGCTTTGCAGAAGGTGCTGGACGAGTGCCAGAACCAGCG
GGCCTGCCACCTCCTGGTCAATAGCCGAGTCTTCGGACCTGACCTTTGTCCAGGAAGCAGTAAA
TACCTCCTGGTCTCCTTTAAATGCCAACCTAATGAGTTGAAAAACAAAACAGTGTGTGAAGACC
AGGAACTGAAGCTTCACTGCCACGGGTCCAAGTTTCTCAACATCTACTCTGCCGCCTACGGCCG
GAGGACCCAGCAGACAGACATCTGTTCCTCCGGGGCGGAGCTGCTGCCCCCCTTTGACTGCCTG
TCTTACACGGCTTCACAAGTCCTGTCCAGAAGGTGCTACGGGAAGCAGAGATGTAAGGTCCTCG
TCGATAATTACCACTTCGGAAGCCCATGTCTTCCCGGAGTGAAAAAATACCTCACTGTTGCCTA
CGCGTGTGTTCCCAAGAACATACTCACGGCGGTTGACCCAGCCGTTGCTAACCTAAATCCCTCT
CTGAAGAAAGACGATGAATACGGTATAAAATTCAACCCAAGCGGATCGAGGGTTGTGCGGAAAG
ATGGCGTTATTGTCAGCAACTCTCTGGCTGCGTTTGCTTACATTCGAGCCCACCCCGAGAGAGC
TGCTCTGCTGTTCGTGTCTAGTGTCTGCATCGGCCTGTTCCTCACACTGTGTGCCCTGGTCATC
AGAGTGTCCTGCACCAAGGACTTCCAGGAGCTGAGGCAGGGGAGGGAGCACCTGGTGCAAGGGA
GTGACAAGGCGGAGGAGGACAGTGAGGAGGATGTGGAAGAGGAGGACTCCTCAGATTCTGAGTT
TCCTGTGGAATTGTCCAGGTTTTGTAGGACTACGTATCCAGCCTATAGCTCTATAGAAGCCGCT
GAGCTGGCAGAAAGGATTGAGCGCAGGGAGCAAATCATTCAAGAAATATGGATGAACAGTGGCC
TAGACTCCTCGCTCCCCAGGAACATGGGCCATTTCTACTGAAAACCAGATGCATCTGGATAAGA
TTATACTTTCTGAAGAAGGAAGGATCCAGAATGCGCTGTCTCCCCACCCTGTCCAGTTCTGGTC
CACTTGTACCTTCTATGAAGGAGAACCTGTCATGTCATCCGAGATGGGTGAAGCCGGAAAGGTG
TCAAAGGGACACCTCACTGTTTACAGCACACCCTGGAATAAATTGGGAGGAAGACGTGGA

hide sequence

RefSeq Acc Id:

XR_010056249

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	43,575,613 - 43,649,224 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001417718	(Get FASTA)	NCBI Sequence Viewer
	NP_001417719	(Get FASTA)	NCBI Sequence Viewer
	XP_017453578	(Get FASTA)	NCBI Sequence Viewer
	XP_017453579	(Get FASTA)	NCBI Sequence Viewer
	XP_038944702	(Get FASTA)	NCBI Sequence Viewer
	XP_340967	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM10696	(Get FASTA)	NCBI Sequence Viewer
	EDM10697	(Get FASTA)	NCBI Sequence Viewer
	EDM10698	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002838.5
	ENSRNOP00000080620
	ENSRNOP00000080620.2
	ENSRNOP00000085207.1
	ENSRNOP00000088246
	ENSRNOP00000088246.2

RefSeq Acc Id:

XP_340967 ⟸ XM_340966

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVLPGHPRLPPGPQPPQNPGLRRQVEPPGQLLRLFYCTVLVCSKETSALTDFSGYLTKLLQNHT
AYACDGDYLNLQCPRHSTISVQSAFYGQDFQRCSPQEPISQREDNLTCVASTALQKVLDECQNQ
RACHLLVNSRVFGPDLCPGSSKYLLVSFKCQPNELKNKTVCEDQELKLHCHGSKFLNIYSAAYG
RRTQQTDICSSGAELLPPFDCLSYTASQVLSRRCYGKQRCKVLVDNYHFGSPCLPGVKKYLTVA
YACVPKNILTAVDPAVANLNPSLKKDDEYGIKFNPSGSRVVRKDGVIVSNSLAAFAYIRAHPER
AALLFVSSVCIGLFLTLCALVIRVSCTKDFQELRQGREHLVQGSDKAEEDSEEDVEEEDSSDSE
FPVELSRFCRTTYPAYSSIEAAELAERIERREQIIQEIWMNSGLDSSLPRNMGHFY

hide sequence

RefSeq Acc Id:	XP_017453578 ⟸ XM_017598089
- Peptide Label:	isoform X2
- UniProtKB:	A6JLD1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVLPGHPRLPPGPQPPQNPGLRRQVEPPGQLLRLFYCTVLVCSKETSALTDFSGYLTKLLQNHT AYACDGDYLNLQCPRHSTISVQSAFYGQDFQRCSPQEPISQREDNLTCVASTALQVLDECQNQR ACHLLVNSRVFGPDLCPGSSKYLLVSFKCQPNELKNKTVCEDQELKLHCHGSKFLNIYSAAYGR RTQQTDICSSGAELLPPFDCLSYTASQVLSRRCYGKQRCKVLVDNYHFGSPCLPGVKKYLTVAY ACVPKNILTAVDPAVANLNPSLKKDDEYGIKFNPSGSRVVRKDGVIVSNSLAAFAYIRAHPERA ALLFVSSVCIGLFLTLCALVIRVSCTKDFQELRQGREHLVQGSDKAEEDSEEDVEEEDSSDSEF PVELSRFCRTTYPAYSSIEAAELAERIERREQIIQEIWMNSGLDSSLPRNMGHFY hide sequence

RefSeq Acc Id:

XP_017453579 ⟸ XM_017598090

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVLPGHPRLPPGPQPPQNPGLRRQVEPPGQLLRLFYCTVLVCSKETSALTDFSDELKNKTVCED
QELKLHCHGSKFLNIYSAAYGRRTQQTDICSSGAELLPPFDCLSYTASQVLSRRCYGKQRCKVL
VDNYHFGSPCLPGVKKYLTVAYACVPKNILTAVDPAVANLNPSLKKDDEYGIKFNPSGSRVVRK
DGVIVSNSLAAFAYIRAHPERAALLFVSSVCIGLFLTLCALVIRVSCTKDFQELRQGREHLVQG
SDKAEEDSEEDVEEEDSSDSEFPVELSRFCRTTYPAYSSIEAAELAERIERREQIIQEIWMNSG
LDSSLPRNMGHFY

hide sequence

Ensembl Acc Id:

ENSRNOP00000002838 ⟸ ENSRNOT00000002838

RefSeq Acc Id:	XP_038944702 ⟸ XM_039088774
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000085207 ⟸ ENSRNOT00000097243

Ensembl Acc Id:

ENSRNOP00000080620 ⟸ ENSRNOT00000098199

Ensembl Acc Id:

ENSRNOP00000088246 ⟸ ENSRNOT00000113909

Protein Domains

SUEL-type lectin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A895-F1-model_v2	AlphaFold	D4A895	1-440	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698051

Promoter ID:

EPDNEW_R8573

Type:

initiation region

Name:

Eva1c_1

Description:

eva-1 homolog C

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R8574

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	31,002,439 - 31,002,499	EPDNEW

RGD ID:

13698065

Promoter ID:

EPDNEW_R8574

Type:

single initiation site

Name:

Eva1c_2

Description:

eva-1 homolog C

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R8573

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	31,002,713 - 31,002,773	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307569	AgrOrtholog
BioCyc Gene	G2FUF-21931	BioCyc
Ensembl Genes	ENSRNOG00000002072	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000002838	ENTREZGENE
	ENSRNOT00000002838.10	UniProtKB/TrEMBL
	ENSRNOT00000097243.2	UniProtKB/TrEMBL
	ENSRNOT00000098199	ENTREZGENE
	ENSRNOT00000098199.2	UniProtKB/TrEMBL
	ENSRNOT00000113909	ENTREZGENE
	ENSRNOT00000113909.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.740	UniProtKB/TrEMBL
InterPro	EVA1_dom	UniProtKB/TrEMBL
	Lectin_gal-bd_dom	UniProtKB/TrEMBL
	Lectin_gal-bd_sf	UniProtKB/TrEMBL
NCBI Gene	360695	ENTREZGENE
PANTHER	PROTEIN EVA-1	UniProtKB/TrEMBL
Pfam	FAM176	UniProtKB/TrEMBL
	Gal_Lectin	UniProtKB/TrEMBL
PhenoGen	Eva1c	PhenoGen
PROSITE	SUEL_LECTIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002072	RatGTEx
UniProt	A0A8I5ZR28	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A159_RAT	UniProtKB/TrEMBL
	A0A8I6AIF8	ENTREZGENE, UniProtKB/TrEMBL
	A6JLD1	ENTREZGENE, UniProtKB/TrEMBL
	D4A895	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-27	Eva1c	eva-1 homolog C	Eva1c	eva-1 homolog C (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-11-25	Eva1c	eva-1 homolog C (C. elegans)	Eva1c	eva-1 homolog C	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-11-19	Eva1c	eva-1 homolog C	Fam176c	family with sequence similarity 176, member C	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-10	Fam176c	family with sequence similarity 176, member C	RGD1307569	similar to Protein C21orf63 homolog precursor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1307569	similar to Protein C21orf63 homolog precursor	RGD1307569_predicted	similar to Protein C21orf63 homolog precursor (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1307569_predicted	similar to Protein C21orf63 homolog precursor (predicted)	LOC360695_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360695_predicted	similar to Protein C21orf63 homolog precursor (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message