Ranbp3l (RAN binding protein 3-like) - Rat Genome Database

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Gene: Ranbp3l (RAN binding protein 3-like) Rattus norvegicus
Analyze
Symbol: Ranbp3l
Name: RAN binding protein 3-like
RGD ID: 1307559
Description: Predicted to enable SMAD binding activity. Predicted to be involved in several processes, including mesenchymal cell differentiation involved in bone development; negative regulation of osteoblast differentiation; and protein export from nucleus. Predicted to be located in cytoplasm and nucleus. Orthologous to human RANBP3L (RAN binding protein 3 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acrylamide.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102551932; LOC294789; ran-binding protein 3-like; RGD1307559; similar to Hypothetical protein FLJ25422; uncharacterized LOC102551932
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8259,785,070 - 59,840,338 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl259,785,450 - 59,840,334 (+)EnsemblGRCr8
mRatBN7.2258,057,887 - 58,113,158 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl258,058,263 - 58,113,172 (+)EnsemblmRatBN7.2
Rnor_6.0258,221,773 - 58,458,072 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl258,448,917 - 58,458,517 (+)Ensemblrn6Rnor6.0
Rnor_5.0276,758,985 - 76,772,450 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0277,510,913 - 77,544,728 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4258,666,640 - 58,720,647 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera253,666,881 - 53,721,420 (+)NCBICelera
RGSC_v3.1258,590,213 - 58,649,178 (+)NCBI
Cytogenetic Map2q16NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nuclear pore  (IBA)
nucleus  (IEA)

Molecular Function
protein binding  (ISO)
SMAD binding  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25755279  


Genomics

Comparative Map Data
Ranbp3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8259,785,070 - 59,840,338 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl259,785,450 - 59,840,334 (+)EnsemblGRCr8
mRatBN7.2258,057,887 - 58,113,158 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl258,058,263 - 58,113,172 (+)EnsemblmRatBN7.2
Rnor_6.0258,221,773 - 58,458,072 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl258,448,917 - 58,458,517 (+)Ensemblrn6Rnor6.0
Rnor_5.0276,758,985 - 76,772,450 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0277,510,913 - 77,544,728 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4258,666,640 - 58,720,647 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera253,666,881 - 53,721,420 (+)NCBICelera
RGSC_v3.1258,590,213 - 58,649,178 (+)NCBI
Cytogenetic Map2q16NCBI
RANBP3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38536,246,913 - 36,301,902 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl536,246,913 - 36,302,114 (-)Ensemblhg38GRCh38
GRCh37536,247,015 - 36,302,004 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36536,284,861 - 36,337,761 (-)NCBIBuild 36Build 36hg18NCBI36
Celera536,134,779 - 36,187,682 (-)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef536,200,738 - 36,253,651 (-)NCBIHuRef
CHM1_1536,251,851 - 36,304,761 (-)NCBICHM1_1
T2T-CHM13v2.0536,495,219 - 36,550,209 (-)NCBIT2T-CHM13v2.0
Ranbp3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,997,209 - 9,071,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,997,433 - 9,067,417 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38158,967,949 - 9,067,335 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,967,949 - 9,067,335 (+)Ensemblmm10GRCm38
MGSCv37158,918,119 - 8,956,192 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv37158,985,428 - 8,997,084 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36158,982,561 - 8,994,217 (+)NCBIMGSCv36mm8
Celera158,812,846 - 8,880,770 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map153.82NCBI
Ranbp3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542621,052,647 - 21,107,110 (-)Ensembl
ChiLan1.0NW_00495542621,054,463 - 21,106,290 (-)NCBIChiLan1.0ChiLan1.0
RANBP3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2474,027,847 - 74,081,610 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1572,181,479 - 72,236,614 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0574,061,669 - 74,115,154 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1579,343,218 - 79,396,901 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl579,343,218 - 79,396,121 (+)EnsemblpanPan2panpan1.1
NADK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1472,297,480 - 72,341,176 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl472,297,114 - 72,339,460 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha471,907,202 - 71,950,907 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0472,805,112 - 72,848,811 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl472,804,721 - 72,848,810 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1472,550,564 - 72,594,244 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0472,674,148 - 72,717,850 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0473,207,561 - 73,251,269 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ranbp3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213225,773,116 - 225,840,760 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365185,531,004 - 5,579,942 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365185,531,094 - 5,579,471 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANBP3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1621,562,916 - 21,611,885 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11621,562,907 - 21,612,389 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21622,580,457 - 22,607,286 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1435,095,520 - 35,156,378 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl435,096,196 - 35,155,543 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607125,426,557 - 25,477,496 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ranbp3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475918,710,586 - 18,771,131 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475918,710,876 - 18,769,727 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ranbp3l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13171,521,320 - 171,568,313 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ranbp3l
328 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25838820177302351Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23675034481750344Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)240306867124537199Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)241801363104744824Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24490435585286097Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)244537979112567334Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)25126685996266859Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23686864381868643Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)24490435589904355Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)23326999678269996Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat

Markers in Region
BF388204  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2258,084,755 - 58,084,948 (+)MAPPERmRatBN7.2
Rnor_6.0258,145,222 - 58,145,414NCBIRnor6.0
Rnor_5.0277,518,799 - 77,518,991UniSTSRnor5.0
RGSC_v3.4258,692,771 - 58,692,963UniSTSRGSC3.4
Celera253,693,694 - 53,693,886UniSTS
RH 3.4 Map2332.4UniSTS
Cytogenetic Map2q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 11 67 159 89 88 57 75 57 6 333 174 11 132 81 92 31 15 15

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006224035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000082562   ⟹   ENSRNOP00000070782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl259,785,450 - 59,840,334 (+)Ensembl
mRatBN7.2 Ensembl258,058,263 - 58,113,172 (+)Ensembl
Rnor_6.0 Ensembl258,448,917 - 58,458,517 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100816   ⟹   ENSRNOP00000077562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl259,785,450 - 59,840,334 (+)Ensembl
mRatBN7.2 Ensembl258,058,263 - 58,113,172 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000170323   ⟹   ENSRNOP00000102087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl259,785,875 - 59,840,334 (+)Ensembl
RefSeq Acc Id: XM_039103541   ⟹   XP_038959469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,071 - 59,840,338 (+)NCBI
mRatBN7.2258,057,888 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103542   ⟹   XP_038959470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,072 - 59,840,338 (+)NCBI
mRatBN7.2258,057,889 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103543   ⟹   XP_038959471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,073 - 59,840,338 (+)NCBI
mRatBN7.2258,057,890 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103544   ⟹   XP_038959472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,074 - 59,840,338 (+)NCBI
mRatBN7.2258,057,892 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103545   ⟹   XP_038959473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,074 - 59,840,338 (+)NCBI
mRatBN7.2258,057,891 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103546   ⟹   XP_038959474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,824,609 - 59,840,338 (+)NCBI
mRatBN7.2258,097,423 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103547   ⟹   XP_038959475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,826,236 - 59,840,338 (+)NCBI
mRatBN7.2258,099,052 - 58,113,158 (+)NCBI
RefSeq Acc Id: XM_039103548   ⟹   XP_038959476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8259,785,070 - 59,837,622 (+)NCBI
mRatBN7.2258,057,887 - 58,110,442 (+)NCBI
Ensembl Acc Id: ENSRNOP00000070782   ⟸   ENSRNOT00000082562
RefSeq Acc Id: XP_038959476   ⟸   XM_039103548
- Peptide Label: isoform X7
- UniProtKB: A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959469   ⟸   XM_039103541
- Peptide Label: isoform X1
- UniProtKB: A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959470   ⟸   XM_039103542
- Peptide Label: isoform X2
- UniProtKB: A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959471   ⟸   XM_039103543
- Peptide Label: isoform X3
- UniProtKB: A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959473   ⟸   XM_039103545
- Peptide Label: isoform X5
- UniProtKB: A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959472   ⟸   XM_039103544
- Peptide Label: isoform X4
- UniProtKB: A0A8I5YCF1 (UniProtKB/TrEMBL),   A0A096MJ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959474   ⟸   XM_039103546
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038959475   ⟸   XM_039103547
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000077562   ⟸   ENSRNOT00000100816
Ensembl Acc Id: ENSRNOP00000102087   ⟸   ENSRNOT00000170323

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MJ81-F1-model_v2 AlphaFold A0A096MJ81 1-241 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307559 AgrOrtholog
BioCyc Gene G2FUF-54109 BioCyc
Ensembl Genes ENSRNOG00000052173 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082562 ENTREZGENE
  ENSRNOT00000082562.3 UniProtKB/TrEMBL
  ENSRNOT00000100816 ENTREZGENE
  ENSRNOT00000100816.2 UniProtKB/TrEMBL
  ENSRNOT00000170323 ENTREZGENE
  ENSRNOT00000170323.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  Ran_bind_dom UniProtKB/TrEMBL
  RanBP1-like UniProtKB/TrEMBL
NCBI Gene 294789 ENTREZGENE
PANTHER PTHR23138 UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 3-LIKE UniProtKB/TrEMBL
Pfam Ran_BP1 UniProtKB/TrEMBL
PhenoGen Ranbp3l PhenoGen
PROSITE RANBD1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000052173 RatGTEx
SMART RanBD UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A096MJ81 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YCF1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L9T0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ranbp3l  RAN binding protein 3-like  LOC102551932  uncharacterized LOC102551932  Data merged from RGD:7735791 737654 PROVISIONAL
2013-12-18 LOC102551932  uncharacterized LOC102551932      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-07 Ranbp3l  RAN binding protein 3-like  RGD1307559_predicted  similar to Hypothetical protein FLJ25422 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1307559_predicted  similar to Hypothetical protein FLJ25422 (predicted)  LOC294789_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294789_predicted  similar to Hypothetical protein FLJ25422 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL