Tex56p (testis expressed 56) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tex56p (testis expressed 56) Rattus norvegicus
Analyze
Symbol: Tex56p
Name: testis expressed 56
RGD ID: 1307537
Description: Predicted to enable nucleic acid binding activity. Orthologous to human TEX56P (testis expressed 56, pseudogene); INTERACTS WITH lidocaine; thioacetamide; sodium arsenite (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C17h6orf201; hypothetical protein LOC291077; LOC291077; RGD1307537; similar to human chromosome 6 open reading frame 201; similar to RIKEN cDNA 4933417A18; testis expressed protein 56; Tex56; uncharacterized protein C6orf201 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81730,135,241 - 30,171,956 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1730,133,475 - 30,171,957 (-)EnsemblGRCr8
mRatBN7.21729,929,855 - 29,966,578 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1729,929,780 - 29,966,579 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1729,750,519 - 29,791,189 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01731,354,263 - 31,394,923 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01729,746,242 - 29,786,909 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01730,625,292 - 30,661,689 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1730,623,526 - 30,661,690 (-)Ensemblrn6Rnor6.0
Rnor_5.01732,525,285 - 32,561,682 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41736,260,891 - 36,297,519 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1729,499,886 - 29,536,588 (-)NCBICelera
RGSC_v3.11736,261,965 - 36,300,361 (-)NCBI
Cytogenetic Map17p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548  


Genomics

Comparative Map Data
Tex56p
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81730,135,241 - 30,171,956 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1730,133,475 - 30,171,957 (-)EnsemblGRCr8
mRatBN7.21729,929,855 - 29,966,578 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1729,929,780 - 29,966,579 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1729,750,519 - 29,791,189 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01731,354,263 - 31,394,923 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01729,746,242 - 29,786,909 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01730,625,292 - 30,661,689 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1730,623,526 - 30,661,690 (-)Ensemblrn6Rnor6.0
Rnor_5.01732,525,285 - 32,561,682 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41736,260,891 - 36,297,519 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1729,499,886 - 29,536,588 (-)NCBICelera
RGSC_v3.11736,261,965 - 36,300,361 (-)NCBI
Cytogenetic Map17p12NCBI
TEX56P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3864,079,209 - 4,130,765 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl64,087,534 - 4,122,032 (+)Ensemblhg38GRCh38
GRCh38.p14 Ensembl64,079,209 - 4,130,951 (+)Ensemblhg38GRCh38
GRCh3764,079,443 - 4,130,999 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3664,024,439 - 4,075,998 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3464,024,449 - 4,075,995NCBI
Celera65,308,009 - 5,359,561 (+)NCBICelera
Cytogenetic Map6p25.2NCBI
HuRef63,955,978 - 4,007,302 (+)NCBIHuRef
CHM1_164,082,275 - 4,133,833 (+)NCBICHM1_1
T2T-CHM13v2.063,948,511 - 4,000,053 (+)NCBIT2T-CHM13v2.0
Tex56
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391335,108,388 - 35,140,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1335,108,392 - 35,139,858 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381334,924,405 - 34,956,218 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1334,924,409 - 34,955,875 (+)Ensemblmm10GRCm38
MGSCv371335,016,278 - 35,045,066 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361334,931,874 - 34,963,340 (+)NCBIMGSCv36mm8
Celera1336,051,196 - 36,083,551 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1314.22NCBI
CUNH6orf201
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554659,303,368 - 9,339,691 (-)NCBIChiLan1.0ChiLan1.0
LOC100975257
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2518,714,335 - 18,757,291 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1614,717,861 - 14,761,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v063,920,636 - 3,963,159 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.164,110,459 - 4,152,202 (+)NCBIPanPan1.1PanPan1.1panPan2
TEX56P
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1354,331,522 - 4,362,884 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl354,331,233 - 4,360,246 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha354,341,350 - 4,372,301 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0354,393,842 - 4,424,860 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl354,393,217 - 4,422,222 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1354,268,876 - 4,288,089 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0354,290,317 - 4,309,560 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0355,624,923 - 5,655,873 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CUNH6orf201
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494620,042,068 - 20,085,467 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365348,323,497 - 8,354,279 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365348,323,363 - 8,354,279 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103222260
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11768,040,142 - 68,088,498 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660444,038,773 - 4,078,075 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C14H6orf201
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11453,440,237 - 53,485,024 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tex56p
233 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:73
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000048146
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17926675540968173Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17857434232199534Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat

Markers in Region
RH141084  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21729,942,533 - 29,943,712 (+)MAPPERmRatBN7.2
Rnor_6.01730,637,739 - 30,638,917NCBIRnor6.0
Rnor_5.01732,537,732 - 32,538,910UniSTSRnor5.0
RGSC_v3.41736,273,570 - 36,274,748UniSTSRGSC3.4
Celera1729,512,561 - 29,513,739UniSTS
RH 3.4 Map17372.4UniSTS
Cytogenetic Map17p12UniSTS
AU048573  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21729,964,641 - 29,964,877 (+)MAPPERmRatBN7.2
Rnor_6.01730,659,753 - 30,659,988NCBIRnor6.0
Rnor_5.01732,559,746 - 32,559,981UniSTSRnor5.0
RGSC_v3.41736,295,583 - 36,295,818UniSTSRGSC3.4
Celera1729,534,651 - 29,534,886UniSTS
Cytogenetic Map17p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 10 19 47 60 59 28 29 28 6 147 70 30 31 61 31

Sequence


Ensembl Acc Id: ENSRNOT00000048146   ⟹   ENSRNOP00000039407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1730,140,579 - 30,171,957 (-)Ensembl
mRatBN7.2 Ensembl1729,929,780 - 29,966,579 (-)Ensembl
Rnor_6.0 Ensembl1730,623,526 - 30,661,690 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097793   ⟹   ENSRNOP00000097380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1730,146,963 - 30,171,957 (-)Ensembl
mRatBN7.2 Ensembl1729,946,523 - 29,966,579 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000146879   ⟹   ENSRNOP00000111927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1730,151,081 - 30,171,957 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000149429   ⟹   ENSRNOP00000104068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1730,133,475 - 30,171,957 (-)Ensembl
RefSeq Acc Id: NM_001013885   ⟹   NP_001013907
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81730,135,241 - 30,171,956 (-)NCBI
mRatBN7.21729,929,855 - 29,966,578 (-)NCBI
Rnor_6.01730,625,292 - 30,661,689 (-)NCBI
Rnor_5.01732,525,285 - 32,561,682 (-)NCBI
RGSC_v3.41736,260,891 - 36,297,519 (-)RGD
Celera1729,499,886 - 29,536,588 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001013907 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79269 (Get FASTA)   NCBI Sequence Viewer  
  EDL98301 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000104068
GenBank Protein Q6AXY2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013907   ⟸   NM_001013885
- UniProtKB: F1LQ46 (UniProtKB/Swiss-Prot),   Q6AXY2 (UniProtKB/Swiss-Prot),   A0A996RL56 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039407   ⟸   ENSRNOT00000048146
Ensembl Acc Id: ENSRNOP00000097380   ⟸   ENSRNOT00000097793
Ensembl Acc Id: ENSRNOP00000104068   ⟸   ENSRNOT00000149429
Ensembl Acc Id: ENSRNOP00000111927   ⟸   ENSRNOT00000146879

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AXY2-F1-model_v2 AlphaFold Q6AXY2 1-219 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700407
Promoter ID:EPDNEW_R10930
Type:initiation region
Name:RGD1307537_1
Description:similar to RIKEN cDNA 4933417A18
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01730,661,687 - 30,661,747EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307537 AgrOrtholog
BioCyc Gene G2FUF-9619 BioCyc
Ensembl Genes ENSRNOG00000033763 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000149429 ENTREZGENE
IMAGE_CLONE IMAGE:7133712 IMAGE-MGC_LOAD
InterPro DUF4523 UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
KEGG Report rno:291077 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94380 IMAGE-MGC_LOAD
NCBI Gene 291077 ENTREZGENE
PANTHER CHROMOSOME 35 C6ORF201 HOMOLOG UniProtKB/Swiss-Prot
  PTHR35968 UniProtKB/Swiss-Prot
Pfam DUF4523 UniProtKB/Swiss-Prot
PhenoGen Tex56p PhenoGen
RatGTEx ENSRNOG00000033763 RatGTEx
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A8I6B5P6_RAT UniProtKB/TrEMBL
  A0A996RL56 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L401_RAT UniProtKB/TrEMBL
  A0ABK0M7R2_RAT UniProtKB/TrEMBL
  CF201_RAT UniProtKB/Swiss-Prot
  F1LQ46 ENTREZGENE
  Q6AXY2 ENTREZGENE
UniProt Secondary F1LQ46 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-01 Tex56p  testis expressed 56  C17h6orf201  similar to human chromosome 6 open reading frame 201  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-23 C17h6orf201  similar to human chromosome 6 open reading frame 201  RGD1307537  similar to RIKEN cDNA 4933417A18  Name and Symbol changed 629549 APPROVED
2005-12-06 RGD1307537  similar to RIKEN cDNA 4933417A18  RGD1307537_predicted  similar to RIKEN cDNA 4933417A18 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307537_predicted  similar to RIKEN cDNA 4933417A18 (predicted)  LOC291077_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC291077_predicted  similar to RIKEN cDNA 4933417A18 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL