Rnps1 (RNA binding protein with serine rich domain 1) - Rat Genome Database

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Gene: Rnps1 (RNA binding protein with serine rich domain 1) Rattus norvegicus
Analyze
Symbol: Rnps1
Name: RNA binding protein with serine rich domain 1
RGD ID: 1307522
Description: Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in mRNA metabolic process; positive regulation of apoptotic process; and regulation of mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of ASAP complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human RNPS1 (RNA binding protein with serine rich domain 1); PARTICIPATES IN spliceosome pathway; mRNA decay pathway; RNA transport pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC287113; ribonucleic acid binding protein S1; RNA binding protein S1; RNA-binding protein with serine-rich domain 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rnps1-ps2   Rnps1-ps5  
Candidate Gene For: Bmd4
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,950,151 - 13,960,396 (+)NCBIGRCr8
mRatBN7.21013,445,516 - 13,455,858 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,445,653 - 13,455,858 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,192,138 - 18,202,353 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,680,982 - 17,691,197 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,180,170 - 13,190,385 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,786,339 - 13,796,720 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,786,459 - 13,796,717 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,603,258 - 13,613,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,670,753 - 13,681,591 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,670,752 - 13,681,588 (+)NCBI
Celera1013,126,141 - 13,136,350 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3-chloropropane-1,2-diol  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
clofibrate  (EXP)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
fenpyroximate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gallic acid  (ISO)
gentamycin  (EXP)
ivermectin  (ISO)
L-ethionine  (EXP)
nefazodone  (EXP)
omeprazole  (EXP)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
propiconazole  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
triadimefon  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
ASAP complex  (IBA,ISO,ISS)
cytoplasm  (IBA,IEA,ISO)
nuclear speck  (IEA)
nucleoplasm  (IBA,ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. The ever-increasing complexities of the exon junction complex. Tange TO, etal., Curr Opin Cell Biol. 2004 Jun;16(3):279-84.
Additional References at PubMed
PMID:11546874   PMID:12477932   PMID:12665594   PMID:15489334   PMID:16209946   PMID:22203037   PMID:22388736   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Rnps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,950,151 - 13,960,396 (+)NCBIGRCr8
mRatBN7.21013,445,516 - 13,455,858 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,445,653 - 13,455,858 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,192,138 - 18,202,353 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,680,982 - 17,691,197 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,180,170 - 13,190,385 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,786,339 - 13,796,720 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,786,459 - 13,796,717 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,603,258 - 13,613,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,670,753 - 13,681,591 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,670,752 - 13,681,588 (+)NCBI
Celera1013,126,141 - 13,136,350 (+)NCBICelera
Cytogenetic Map10q12NCBI
RNPS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,253,116 - 2,268,126 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,253,116 - 2,268,397 (-)EnsemblGRCh38hg38GRCh38
GRCh37162,303,117 - 2,318,127 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,243,122 - 2,258,115 (-)NCBINCBI36Build 36hg18NCBI36
Build 34162,243,124 - 2,258,115NCBI
Celera162,517,549 - 2,532,543 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,229,146 - 2,244,460 (-)NCBIHuRef
CHM1_1162,303,057 - 2,318,370 (-)NCBICHM1_1
T2T-CHM13v2.0162,275,563 - 2,290,572 (-)NCBIT2T-CHM13v2.0
Rnps1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,633,620 - 24,644,872 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,633,539 - 24,644,875 (+)EnsemblGRCm39 Ensembl
GRCm381724,414,646 - 24,425,898 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,414,565 - 24,425,901 (+)EnsemblGRCm38mm10GRCm38
MGSCv371724,551,620 - 24,562,843 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,142,693 - 24,153,495 (+)NCBIMGSCv36mm8
Celera1724,927,539 - 24,938,409 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.39NCBI
Rnps1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,995,404 - 15,009,358 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,995,404 - 15,009,358 (+)NCBIChiLan1.0ChiLan1.0
RNPS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,754,864 - 2,769,986 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,535,775 - 6,550,925 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0161,110,249 - 1,124,975 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,355,936 - 2,368,816 (-)NCBIpanpan1.1PanPan1.1panPan2
RNPS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,719,713 - 38,729,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,719,792 - 38,728,773 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,959,350 - 39,969,059 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,028,536 - 39,038,248 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,028,425 - 39,038,248 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,713,579 - 38,723,287 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,685,919 - 38,695,628 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,164,604 - 39,174,314 (+)NCBIUU_Cfam_GSD_1.0
Rnps1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,915,194 - 104,925,133 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,784,480 - 1,793,481 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,784,396 - 1,794,269 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNPS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,739,308 - 39,750,005 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,739,058 - 39,749,600 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,509,677 - 42,520,056 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNPS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,148,929 - 2,163,810 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606828,893,548 - 28,908,997 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnps1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462482467,927 - 78,180 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462482467,927 - 78,276 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnps1
26 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:329
Count of miRNA genes:201
Interacting mature miRNAs:235
Transcripts:ENSRNOT00000010915
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat

Markers in Region
BE117488  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21013,447,465 - 13,447,617 (+)MAPPERmRatBN7.2
Rnor_6.01013,788,276 - 13,788,427NCBIRnor6.0
Rnor_5.01013,605,206 - 13,605,357UniSTSRnor5.0
RGSC_v3.41013,672,570 - 13,672,721UniSTSRGSC3.4
Celera1013,127,958 - 13,128,109UniSTS
RH 3.4 Map10173.1UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000010915   ⟹   ENSRNOP00000047771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1013,445,653 - 13,455,852 (+)Ensembl
Rnor_6.0 Ensembl1013,786,459 - 13,796,717 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100575   ⟹   ENSRNOP00000085374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1013,445,749 - 13,455,858 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100989   ⟹   ENSRNOP00000094781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1013,445,683 - 13,455,855 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105026   ⟹   ENSRNOP00000089572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1013,445,670 - 13,455,858 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106045   ⟹   ENSRNOP00000090425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1013,445,670 - 13,455,858 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116681   ⟹   ENSRNOP00000093141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1013,445,680 - 13,455,858 (+)Ensembl
RefSeq Acc Id: NM_001011890   ⟹   NP_001011890
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,950,187 - 13,960,396 (+)NCBI
mRatBN7.21013,445,649 - 13,455,858 (+)NCBI
Rnor_6.01013,786,459 - 13,796,720 (+)NCBI
Rnor_5.01013,603,258 - 13,613,706 (+)NCBI
RGSC_v3.41013,670,753 - 13,681,591 (+)RGD
Celera1013,126,141 - 13,136,350 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245933   ⟹   XP_006245995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,950,151 - 13,960,396 (+)NCBI
mRatBN7.21013,445,516 - 13,455,852 (+)NCBI
Rnor_6.01013,786,339 - 13,796,720 (+)NCBI
Rnor_5.01013,603,258 - 13,613,706 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001011890   ⟸   NM_001011890
- UniProtKB: Q6AYK1 (UniProtKB/Swiss-Prot),   A6HCR9 (UniProtKB/TrEMBL),   A0A8L2QN59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245995   ⟸   XM_006245933
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AKA2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000047771   ⟸   ENSRNOT00000010915
Ensembl Acc Id: ENSRNOP00000093141   ⟸   ENSRNOT00000116681
Ensembl Acc Id: ENSRNOP00000089572   ⟸   ENSRNOT00000105026
Ensembl Acc Id: ENSRNOP00000094781   ⟸   ENSRNOT00000100989
Ensembl Acc Id: ENSRNOP00000085374   ⟸   ENSRNOT00000100575
Ensembl Acc Id: ENSRNOP00000090425   ⟸   ENSRNOT00000106045
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYK1-F1-model_v2 AlphaFold Q6AYK1 1-305 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697009
Promoter ID:EPDNEW_R7533
Type:multiple initiation site
Name:Rnps1_1
Description:RNA binding protein with serine rich domain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01013,786,462 - 13,786,522EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307522 AgrOrtholog
BioCyc Gene G2FUF-25864 BioCyc
Ensembl Genes ENSRNOG00000008703 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055027166 UniProtKB/Swiss-Prot
  ENSRNOG00060010201 UniProtKB/Swiss-Prot
  ENSRNOG00065010423 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000010915.6 UniProtKB/TrEMBL
  ENSRNOT00000100575.1 UniProtKB/TrEMBL
  ENSRNOT00000100989.1 UniProtKB/TrEMBL
  ENSRNOT00000105026.1 UniProtKB/Swiss-Prot
  ENSRNOT00000106045.1 UniProtKB/TrEMBL
  ENSRNOT00000116681.1 UniProtKB/TrEMBL
  ENSRNOT00055046985 UniProtKB/Swiss-Prot
  ENSRNOT00060017229 UniProtKB/Swiss-Prot
  ENSRNOT00065016882 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113485 IMAGE-MGC_LOAD
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNPS1_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:287113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93935 IMAGE-MGC_LOAD
NCBI Gene 287113 ENTREZGENE
PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA-BINDING PROTEIN WITH SERINE-RICH DOMAIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rnps1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008703 RatGTEx
  ENSRNOG00055027166 RatGTEx
  ENSRNOG00060010201 RatGTEx
  ENSRNOG00065010423 RatGTEx
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A3X2_RAT UniProtKB/TrEMBL
  A0A8I6A9H6_RAT UniProtKB/TrEMBL
  A0A8I6AF86_RAT UniProtKB/TrEMBL
  A0A8I6AKA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QN59 ENTREZGENE, UniProtKB/TrEMBL
  A6HCR9 ENTREZGENE, UniProtKB/TrEMBL
  Q6AYK1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-12-06 Rnps1  RNA binding protein with serine rich domain 1  Rnps1  RNA binding protein S1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-12-01 Rnps1  RNA binding protein S1  Rnps1  ribonucleic acid binding protein S1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Rnps1  ribonucleic acid binding protein S1  Rnps1_predicted  ribonucleic acid binding protein S1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rnps1_predicted  ribonucleic acid binding protein S1 (predicted)      Symbol and Name status set to approved 70820 APPROVED