R3hdm1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 13 | 42,148,281 - 42,286,311 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 13 | 39,595,848 - 39,733,876 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 13 | 39,595,848 - 39,733,876 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 13 | 42,182,877 - 42,327,785 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 13 | 43,470,991 - 43,615,903 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 13 | 40,732,041 - 40,869,841 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 13 | 44,812,567 - 44,950,762 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 13 | 44,812,567 - 44,950,762 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 13 | 49,897,739 - 50,035,934 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 13 | 40,803,986 - 40,942,005 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 13 | 40,872,256 - 40,902,112 (+) | NCBI | | | | | Celera | 13 | 39,970,008 - 40,107,880 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | q13 | NCBI | | | | |
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R3HDM1 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 2 | 135,531,484 - 135,725,269 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 2 | 135,531,455 - 135,725,270 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 2 | 136,289,054 - 136,482,839 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 2 | 136,005,553 - 136,199,309 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 2 | 136,122,814 - 136,316,570 | NCBI | | | | | Celera | 2 | 129,999,849 - 130,193,607 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | q21.3 | NCBI | | | | | HuRef | 2 | 128,281,757 - 128,476,027 (+) | NCBI | | HuRef | | | CHM1_1 | 2 | 136,293,983 - 136,487,726 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 2 | 135,972,007 - 136,165,780 (+) | NCBI | | T2T-CHM13v2.0 | | |
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R3hdm1 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 128,031,016 - 128,165,475 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 128,031,038 - 128,165,473 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 128,103,282 - 128,237,738 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 128,103,301 - 128,237,736 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 129,999,883 - 130,134,312 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 129,930,852 - 130,065,281 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 130,730,333 - 130,864,983 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | E3 | NCBI | | | | | cM Map | 1 | 55.8 | NCBI | | | | |
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R3hdm1 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955440 | 2,976,012 - 3,078,735 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955440 | 2,908,721 - 3,076,522 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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R3HDM1 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 13 | 39,210,277 - 39,400,527 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 2B | 39,225,247 - 39,415,497 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 2B | 24,141,258 - 24,331,499 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 2B | 139,604,085 - 139,793,678 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 2B | 139,654,036 - 139,793,678 (+) | Ensembl | panpan1.1 | | panPan2 | |
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R3HDM1 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 19 | 38,302,731 - 38,501,678 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 19 | 38,356,065 - 38,500,689 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 19 | 38,546,395 - 38,745,419 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 19 | 39,748,590 - 39,947,667 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 19 | 39,748,601 - 39,947,705 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 19 | 38,390,733 - 38,589,681 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 19 | 38,553,855 - 38,752,824 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 19 | 39,786,400 - 39,985,866 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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R3hdm1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405303 | 101,289,717 - 101,455,045 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936469 | 40,162,576 - 40,328,147 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936469 | 40,162,670 - 40,328,016 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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R3HDM1 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 15 | 16,230,922 - 16,413,990 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 15 | 16,230,961 - 16,414,358 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 15 | 18,643,864 - 18,802,989 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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R3HDM1 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 10 | 19,739,973 - 19,935,345 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 10 | 19,793,843 - 19,935,343 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666061 | 2,528,536 - 2,723,980 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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R3hdm1 (Heterocephalus glaber - naked mole-rat) |
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