Gapvd1 (GTPase activating protein and VPS9 domains 1) - Rat Genome Database

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Gene: Gapvd1 (GTPase activating protein and VPS9 domains 1) Rattus norvegicus
Analyze
Symbol: Gapvd1
Name: GTPase activating protein and VPS9 domains 1
RGD ID: 1307479
Description: Predicted to enable GTPase activating protein binding activity; guanyl-nucleotide exchange factor activity; and small GTPase binding activity. Predicted to be involved in regulation of protein transport. Predicted to be located in plasma membrane. Predicted to be active in cytosol and endocytic vesicle. Orthologous to human GAPVD1 (GTPase activating protein and VPS9 domains 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GTPase-activating protein and VPS9 domain-containing protein 1; LOC311880; RGD1307479; similar to KIAA1521 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8338,365,854 - 38,439,403 (-)NCBIGRCr8
mRatBN7.2317,968,345 - 18,041,888 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl317,969,599 - 18,055,218 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0313,751,572 - 13,825,573 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl313,753,165 - 13,824,870 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,071,797 - 19,157,428 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4313,695,149 - 13,769,982 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1313,592,436 - 13,666,436 (-)NCBI
Celera312,689,639 - 12,763,753 (-)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,ISO)
endocytic vesicle  (IBA)
membrane  (IEA)
plasma membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:16410077   PMID:17189207   PMID:25468996  


Genomics

Comparative Map Data
Gapvd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8338,365,854 - 38,439,403 (-)NCBIGRCr8
mRatBN7.2317,968,345 - 18,041,888 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl317,969,599 - 18,055,218 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0313,751,572 - 13,825,573 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl313,753,165 - 13,824,870 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0319,071,797 - 19,157,428 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4313,695,149 - 13,769,982 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1313,592,436 - 13,666,436 (-)NCBI
Celera312,689,639 - 12,763,753 (-)NCBICelera
Cytogenetic Map3p11NCBI
GAPVD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389125,261,826 - 125,367,207 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9125,261,794 - 125,367,207 (+)EnsemblGRCh38hg38GRCh38
GRCh379128,024,105 - 128,129,486 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369127,063,932 - 127,167,111 (+)NCBINCBI36Build 36hg18NCBI36
Celera998,672,084 - 98,776,400 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,636,531 - 97,740,194 (+)NCBIHuRef
CHM1_19128,173,842 - 128,276,963 (+)NCBICHM1_1
T2T-CHM13v2.09137,460,127 - 137,566,391 (+)NCBIT2T-CHM13v2.0
Gapvd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39234,566,190 - 34,645,297 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl234,564,606 - 34,645,244 (-)EnsemblGRCm39 Ensembl
GRCm38234,676,178 - 34,755,285 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl234,674,594 - 34,755,232 (-)EnsemblGRCm38mm10GRCm38
MGSCv37234,532,487 - 34,610,752 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36234,498,976 - 34,577,241 (-)NCBIMGSCv36mm8
Celera234,376,782 - 34,455,073 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.87NCBI
Gapvd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554192,946,553 - 3,046,479 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554192,947,128 - 3,046,230 (-)NCBIChiLan1.0ChiLan1.0
GAPVD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21113,992,280 - 14,121,888 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1913,994,628 - 14,124,236 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0996,377,209 - 96,486,592 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,937,032 - 124,998,916 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,935,407 - 124,998,916 (+)Ensemblpanpan1.1panPan2
GAPVD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1957,751,988 - 57,836,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl957,756,234 - 57,802,174 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha956,952,768 - 57,036,237 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0958,673,550 - 58,757,045 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl958,674,040 - 58,757,060 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,431,747 - 57,515,213 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0957,748,060 - 57,831,691 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0957,839,051 - 57,922,598 (-)NCBIUU_Cfam_GSD_1.0
Gapvd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,625,264 - 193,687,721 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,399,769 - 13,456,252 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,393,800 - 13,454,007 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAPVD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,948,083 - 266,028,533 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,948,067 - 266,030,203 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,771,748 - 299,977,645 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GAPVD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11212,795,200 - 12,908,152 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1212,794,528 - 12,863,689 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660793,213,296 - 3,321,757 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gapvd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247609,878,227 - 9,970,666 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247609,878,366 - 9,970,756 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gapvd1
251 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:69
Interacting mature miRNAs:71
Transcripts:ENSRNOT00000024599, ENSRNOT00000066961
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat

Markers in Region
RH131385  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2317,969,614 - 17,969,800 (+)MAPPERmRatBN7.2
Rnor_6.0313,752,847 - 13,753,032NCBIRnor6.0
Rnor_5.0319,073,072 - 19,073,257UniSTSRnor5.0
RGSC_v3.4313,695,641 - 13,695,826UniSTSRGSC3.4
Celera312,690,914 - 12,691,099UniSTS
RH 3.4 Map3147.0UniSTS
Cytogenetic Map3p11UniSTS
RH138088  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2318,016,632 - 18,016,762 (+)MAPPERmRatBN7.2
Rnor_6.0313,799,684 - 13,799,813NCBIRnor6.0
Rnor_5.0319,119,507 - 19,119,636UniSTSRnor5.0
RGSC_v3.4313,744,652 - 13,744,781UniSTSRGSC3.4
Celera312,737,906 - 12,738,035UniSTS
RH 3.4 Map3147.0UniSTS
Cytogenetic Map3p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 55 39 19 39 8 11 74 35 41 11 8
Low 7 2 2 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000066961   ⟹   ENSRNOP00000063504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl317,969,599 - 18,042,915 (-)Ensembl
Rnor_6.0 Ensembl313,753,165 - 13,824,870 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096520   ⟹   ENSRNOP00000082105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl317,969,599 - 18,055,218 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112773   ⟹   ENSRNOP00000077706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl317,969,599 - 18,052,865 (-)Ensembl
RefSeq Acc Id: NM_001427683   ⟹   NP_001414612
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,365,854 - 38,439,390 (-)NCBI
RefSeq Acc Id: XM_006234027   ⟹   XP_006234089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,365,859 - 38,439,403 (-)NCBI
mRatBN7.2317,968,345 - 18,041,888 (-)NCBI
Rnor_6.0313,751,572 - 13,825,573 (-)NCBI
Rnor_5.0319,071,797 - 19,157,428 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761792   ⟹   XP_008760014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,365,859 - 38,439,403 (-)NCBI
mRatBN7.2317,970,131 - 18,041,888 (-)NCBI
Rnor_6.0313,751,572 - 13,825,572 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761794   ⟹   XP_008760016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,365,859 - 38,439,403 (-)NCBI
mRatBN7.2317,970,131 - 18,041,888 (-)NCBI
Rnor_6.0313,751,572 - 13,825,573 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761795   ⟹   XP_008760017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,365,859 - 38,439,403 (-)NCBI
mRatBN7.2317,970,131 - 18,041,888 (-)NCBI
Rnor_6.0313,751,572 - 13,825,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039106216   ⟹   XP_038962144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,391,914 - 38,439,403 (-)NCBI
mRatBN7.2317,994,404 - 18,041,888 (-)NCBI
RefSeq Acc Id: XM_063283968   ⟹   XP_063140038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,365,859 - 38,439,403 (-)NCBI
RefSeq Acc Id: XM_063283969   ⟹   XP_063140039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,365,859 - 38,439,403 (-)NCBI
RefSeq Acc Id: XR_010064646
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8338,377,167 - 38,439,403 (-)NCBI
RefSeq Acc Id: XP_006234089   ⟸   XM_006234027
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZT12 (UniProtKB/TrEMBL),   A6JUC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760017   ⟸   XM_008761795
- Peptide Label: isoform X4
- UniProtKB: D4A022 (UniProtKB/TrEMBL),   A6JUC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760014   ⟸   XM_008761792
- Peptide Label: isoform X2
- UniProtKB: A6JUC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760016   ⟸   XM_008761794
- Peptide Label: isoform X3
- UniProtKB: A6JUC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000063504   ⟸   ENSRNOT00000066961
RefSeq Acc Id: XP_038962144   ⟸   XM_039106216
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000082105   ⟸   ENSRNOT00000096520
RefSeq Acc Id: ENSRNOP00000077706   ⟸   ENSRNOT00000112773
RefSeq Acc Id: NP_001414612   ⟸   NM_001427683
- UniProtKB: A0A8I5Y674 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140039   ⟸   XM_063283969
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063140038   ⟸   XM_063283968
- Peptide Label: isoform X5
Protein Domains
Ras-GAP   VPS9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A022-F1-model_v2 AlphaFold D4A022 1-1484 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692013
Promoter ID:EPDNEW_R2530
Type:initiation region
Name:Gapvd1_1
Description:GTPase activating protein and VPS9 domains 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0313,824,867 - 13,824,927EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307479 AgrOrtholog
BioCyc Gene G2FUF-50082 BioCyc
Ensembl Genes ENSRNOG00000017925 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066961.5 UniProtKB/TrEMBL
  ENSRNOT00000096520.1 UniProtKB/TrEMBL
  ENSRNOT00000112773.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.246.120 UniProtKB/TrEMBL
  1.20.1050.80 UniProtKB/TrEMBL
InterPro DUF5601 UniProtKB/TrEMBL
  RasGAP UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  VPS9 UniProtKB/TrEMBL
  Vps9-like UniProtKB/TrEMBL
  VPS9_dom_sf UniProtKB/TrEMBL
KEGG Report rno:311880 UniProtKB/TrEMBL
NCBI Gene 311880 ENTREZGENE
PANTHER GTPASE-ACTIVATING PROTEIN AND VPS9 DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR23101 UniProtKB/TrEMBL
Pfam DUF5601 UniProtKB/TrEMBL
  RasGAP UniProtKB/TrEMBL
  VPS9 UniProtKB/TrEMBL
PhenoGen Gapvd1 PhenoGen
PROSITE RAS_GTPASE_ACTIV_2 UniProtKB/TrEMBL
  VPS9 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017925 RatGTEx
SMART VPS9 UniProtKB/TrEMBL
Superfamily-SCOP Rho_GAP UniProtKB/TrEMBL
  SSF109993 UniProtKB/TrEMBL
UniProt A0A8I5Y674 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZT12 ENTREZGENE, UniProtKB/TrEMBL
  A6JUC5 ENTREZGENE, UniProtKB/TrEMBL
  D4A022 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Gapvd1  GTPase activating protein and VPS9 domains 1   Gapvd1_predicted  GTPase activating protein and VPS9 domains 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Gapvd1_predicted  GTPase activating protein and VPS9 domains 1 (predicted)  RGD1307479_predicted  similar to KIAA1521 protein (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1307479_predicted  similar to KIAA1521 protein (predicted)  LOC311880_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC311880_predicted  similar to KIAA1521 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL