Ubxn4 (UBX domain protein 4) - Rat Genome Database

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Gene: Ubxn4 (UBX domain protein 4) Rattus norvegicus
Analyze
Symbol: Ubxn4
Name: UBX domain protein 4
RGD ID: 1307451
Description: Predicted to be involved in ERAD pathway. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Predicted to be active in endoplasmic reticulum. Orthologous to human UBXN4 (UBX domain protein 4); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: erasin; LOC304766; UBX domain containing 2; UBX domain-containing protein 2; UBX domain-containing protein 4; Ubxd2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81342,292,346 - 42,324,928 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1342,292,528 - 42,326,143 (+)EnsemblGRCr8
mRatBN7.21339,740,064 - 39,772,493 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1339,740,107 - 39,772,491 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1342,333,979 - 42,366,389 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01343,622,096 - 43,654,506 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01340,876,035 - 40,908,387 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01344,956,963 - 44,989,653 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1344,957,014 - 44,990,535 (+)Ensemblrn6Rnor6.0
Rnor_5.01350,042,136 - 50,074,825 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41340,948,249 - 40,980,463 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1340,114,083 - 40,146,287 (+)NCBICelera
RGSC_v3.11340,962,291 - 40,994,506 (+)NCBI
Cytogenetic Map13q13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bortezomib  (ISO)
butanal  (ISO)
caffeine  (ISO)
chloroprene  (EXP)
ciguatoxin CTX1B  (ISO)
clobetasol  (ISO)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
heptanal  (ISO)
hexanal  (ISO)
hydralazine  (ISO)
inulin  (ISO)
ivermectin  (ISO)
methotrexate  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
nonanal  (ISO)
octanal  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
propanal  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
torcetrapib  (ISO)
trichostatin A  (ISO)
Triptolide  (EXP)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
ERAD pathway  (IBA,IEA,ISO,ISS)
response to unfolded protein  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18064521   PMID:19822669  


Genomics

Comparative Map Data
Ubxn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81342,292,346 - 42,324,928 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1342,292,528 - 42,326,143 (+)EnsemblGRCr8
mRatBN7.21339,740,064 - 39,772,493 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1339,740,107 - 39,772,491 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1342,333,979 - 42,366,389 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01343,622,096 - 43,654,506 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01340,876,035 - 40,908,387 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01344,956,963 - 44,989,653 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1344,957,014 - 44,990,535 (+)Ensemblrn6Rnor6.0
Rnor_5.01350,042,136 - 50,074,825 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41340,948,249 - 40,980,463 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1340,114,083 - 40,146,287 (+)NCBICelera
RGSC_v3.11340,962,291 - 40,994,506 (+)NCBI
Cytogenetic Map13q13NCBI
UBXN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382135,741,855 - 135,785,056 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2135,741,631 - 135,785,063 (+)Ensemblhg38GRCh38
GRCh372136,499,425 - 136,542,626 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362136,215,659 - 136,259,103 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342136,333,076 - 136,376,357NCBI
Celera2130,209,950 - 130,253,395 (+)NCBICelera
Cytogenetic Map2q21.3NCBI
HuRef2128,492,361 - 128,535,806 (+)NCBIHuRef
CHM1_12136,504,077 - 136,547,823 (+)NCBICHM1_1
T2T-CHM13v2.02136,182,346 - 136,225,533 (+)NCBIT2T-CHM13v2.0
Ubxn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391128,171,635 - 128,207,115 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1128,171,701 - 128,207,115 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381128,243,898 - 128,279,378 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1128,243,964 - 128,279,378 (+)Ensemblmm10GRCm38
MGSCv371130,140,758 - 130,175,954 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361130,071,727 - 130,106,923 (+)NCBIMGSCv36mm8
Celera1130,871,419 - 130,906,987 (+)NCBICelera
Cytogenetic Map1E3NCBI
cM Map155.8NCBI
Ubxn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554403,106,057 - 3,141,323 (+)Ensembl
ChiLan1.0NW_0049554403,106,055 - 3,143,214 (+)NCBIChiLan1.0ChiLan1.0
UBXN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21339,150,457 - 39,197,942 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B39,165,426 - 39,212,905 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B24,081,450 - 24,124,876 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B139,809,945 - 139,852,857 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B139,810,274 - 139,850,671 (+)EnsemblpanPan2panpan1.1
UBXN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11938,519,778 - 38,568,760 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1938,519,773 - 38,568,254 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1938,763,514 - 38,811,636 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01939,965,743 - 40,013,975 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1939,965,705 - 40,013,969 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11938,607,768 - 38,655,999 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01938,767,073 - 38,815,445 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01940,000,107 - 40,048,306 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ubxn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303101,470,685 - 101,508,444 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646940,111,658 - 40,147,181 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493646940,109,276 - 40,147,088 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBXN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1516,160,304 - 16,206,329 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11516,162,115 - 16,206,511 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21518,553,995 - 18,589,857 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBXN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11019,949,704 - 19,990,913 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1019,949,788 - 19,990,383 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660612,471,523 - 2,514,466 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubxn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473235,056,022 - 35,110,987 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473235,055,726 - 35,113,016 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ubxn4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1107,438,840 - 7,469,823 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ubxn4
264 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:47
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000004878
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131244842147969993Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13143736554Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13600200847359539Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133379409660914504Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13308875548088755Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
RH127748  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21339,772,089 - 39,772,275 (+)MAPPERmRatBN7.2
Rnor_6.01344,989,250 - 44,989,435NCBIRnor6.0
Rnor_5.01350,074,422 - 50,074,607UniSTSRnor5.0
RGSC_v3.41340,980,219 - 40,980,404UniSTSRGSC3.4
Celera1340,146,043 - 40,146,228UniSTS
Cytogenetic Map13q12UniSTS
RH137406  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21339,767,192 - 39,767,389 (+)MAPPERmRatBN7.2
Rnor_6.01344,984,353 - 44,984,549NCBIRnor6.0
Rnor_5.01350,069,525 - 50,069,721UniSTSRnor5.0
RGSC_v3.41340,975,322 - 40,975,518UniSTSRGSC3.4
Celera1340,141,146 - 40,141,342UniSTS
RH 3.4 Map1393.2UniSTS
Cytogenetic Map13q12UniSTS
RH138579  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21339,742,196 - 39,742,384 (+)MAPPERmRatBN7.2
Rnor_6.01344,959,082 - 44,959,269NCBIRnor6.0
Rnor_5.01350,044,254 - 50,044,441UniSTSRnor5.0
RGSC_v3.41340,950,325 - 40,950,512UniSTSRGSC3.4
Celera1340,116,159 - 40,116,346UniSTS
Cytogenetic Map13q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000004878   ⟹   ENSRNOP00000004878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1342,292,528 - 42,326,143 (+)Ensembl
mRatBN7.2 Ensembl1339,740,107 - 39,772,331 (+)Ensembl
Rnor_6.0 Ensembl1344,957,014 - 44,990,535 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098224   ⟹   ENSRNOP00000078558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1342,292,678 - 42,324,762 (+)Ensembl
mRatBN7.2 Ensembl1339,740,232 - 39,772,491 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107083   ⟹   ENSRNOP00000079987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1342,292,686 - 42,324,762 (+)Ensembl
mRatBN7.2 Ensembl1339,740,232 - 39,772,491 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113122   ⟹   ENSRNOP00000096311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1339,743,681 - 39,772,491 (+)Ensembl
RefSeq Acc Id: NM_001012025   ⟹   NP_001012025
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81342,292,498 - 42,324,928 (+)NCBI
mRatBN7.21339,740,064 - 39,772,493 (+)NCBI
Rnor_6.01344,957,006 - 44,989,494 (+)NCBI
Rnor_5.01350,042,136 - 50,074,825 (+)NCBI
RGSC_v3.41340,948,249 - 40,980,463 (+)RGD
Celera1340,114,083 - 40,146,287 (+)RGD
Sequence:
RefSeq Acc Id: XM_006249699   ⟹   XP_006249761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81342,292,346 - 42,324,771 (+)NCBI
mRatBN7.21339,740,077 - 39,772,347 (+)NCBI
Rnor_6.01344,956,963 - 44,989,653 (+)NCBI
Rnor_5.01350,042,136 - 50,074,825 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090690   ⟹   XP_038946618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81342,292,346 - 42,324,771 (+)NCBI
mRatBN7.21339,740,077 - 39,772,347 (+)NCBI
RefSeq Acc Id: XM_063272285   ⟹   XP_063128355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81342,292,346 - 42,324,771 (+)NCBI
RefSeq Acc Id: NP_001012025   ⟸   NM_001012025
- UniProtKB: Q5HZY0 (UniProtKB/Swiss-Prot),   A6IBW9 (UniProtKB/TrEMBL),   A6IBX0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249761   ⟸   XM_006249699
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZL25 (UniProtKB/TrEMBL),   A6IBX0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004878   ⟸   ENSRNOT00000004878
RefSeq Acc Id: XP_038946618   ⟸   XM_039090690
- Peptide Label: isoform X2
- UniProtKB: A6IBX0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079987   ⟸   ENSRNOT00000107083
Ensembl Acc Id: ENSRNOP00000096311   ⟸   ENSRNOT00000113122
Ensembl Acc Id: ENSRNOP00000078558   ⟸   ENSRNOT00000098224
RefSeq Acc Id: XP_063128355   ⟸   XM_063272285
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZNR5 (UniProtKB/TrEMBL),   A6IBX0 (UniProtKB/TrEMBL)
Protein Domains
UBX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5HZY0-F1-model_v2 AlphaFold Q5HZY0 1-506 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698778
Promoter ID:EPDNEW_R9303
Type:initiation region
Name:Ubxn4_1
Description:UBX domain protein 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01344,956,964 - 44,957,024EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307451 AgrOrtholog
BioCyc Gene G2FUF-18413 BioCyc
Ensembl Genes ENSRNOG00000003625 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000004878 ENTREZGENE
  ENSRNOT00000098224 ENTREZGENE
  ENSRNOT00000107083 ENTREZGENE
Gene3D-CATH Glutaredoxin UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7307995 IMAGE-MGC_LOAD
InterPro Thioredoxin-like_sf UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  UBX_dom UniProtKB/Swiss-Prot
KEGG Report rno:304766 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105559 IMAGE-MGC_LOAD
NCBI Gene 304766 ENTREZGENE
PANTHER UBX DOMAIN-CONTAINING PROTEIN 4 UniProtKB/Swiss-Prot
  UBX DOMAIN-CONTAINING PROTEIN 4 UniProtKB/Swiss-Prot
Pfam UBX UniProtKB/Swiss-Prot
  UBX7_N UniProtKB/Swiss-Prot
PhenoGen Ubxn4 PhenoGen
PROSITE UBX UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003625 RatGTEx
SMART UBX UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot
  SSF54236 UniProtKB/Swiss-Prot
UniProt A0A8I5ZL25 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q1Y1_RAT UniProtKB/TrEMBL
  A6IBW9 ENTREZGENE, UniProtKB/TrEMBL
  A6IBX0 ENTREZGENE, UniProtKB/TrEMBL
  Q5HZY0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-09 Ubxn4  UBX domain protein 4  Ubxd2  UBX domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Ubxd2  UBX domain containing 2  Ubxd2_predicted  UBX domain containing 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ubxd2_predicted  UBX domain containing 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED