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Gene: Gin1 (gypsy retrotransposon integrase 1) Rattus norvegicus

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Symbol:

Gin1

Name:

gypsy retrotransposon integrase 1

RGD ID:

1307449

Description:

Predicted to enable nucleic acid binding activity. Predicted to be involved in DNA integration. Orthologous to human GIN1 (gypsy retrotransposon integrase 1); INTERACTS WITH 4,4'-diaminodiphenylmethane; atrazine; azoxystrobin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

GIN-1; gypsy retrotransposon integrase-like protein 1; LOC316687; RGD1307449; similar to RIKEN cDNA 4930429M06Rik

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GIN1 (gypsy retrotransposon integrase 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Gin1 (gypsy retrotransposon integrase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gin1 (gypsy retrotransposon integrase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GIN1 (gypsy retrotransposon integrase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GIN1 (gypsy retrotransposon integrase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gin1 (gypsy retrotransposon integrase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GIN1 (gypsy retrotransposon integrase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GIN1 (gypsy retrotransposon integrase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gin1 (gypsy retrotransposon integrase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gin1 (gypsy retrotransposon integrase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Gin1 (gypsy retrotransposon integrase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GIN1 (gypsy retrotransposon integrase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:113436	Alliance	DIOPT (InParanoid\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	gin1	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	105,740,914 - 105,762,357 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	105,742,094 - 105,762,357 (-)	Ensembl				GRCr8
mRatBN7.2	9	98,293,596 - 98,315,155 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	98,293,597 - 98,315,848 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	106,708,493 - 106,728,718 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	111,836,476 - 111,856,701 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	110,179,867 - 110,200,092 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	111,200,285 - 111,220,738 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	111,199,141 - 111,220,693 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	110,750,567 - 110,770,987 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	97,070,918 - 97,091,577 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	95,736,354 - 95,756,618 (-)	NCBI		Celera
RGSC_v3.1	9	97,280,493 - 97,293,502 (-)	NCBI
Cytogenetic Map	9	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

atrazine (EXP)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chlorpyrifos (EXP)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

glyphosate (EXP)

GSK-J4 (ISO)

imidacloprid (EXP)

methapyrilene (EXP)

methylmercury chloride (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

paracetamol (EXP)

phenobarbital (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

rac-lactic acid (ISO)

resorcinol (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

thiabendazole (EXP)

thimerosal (ISO)

topotecan (EXP)

tributylstannane (EXP)

triphenyl phosphate (ISO)

tungsten (ISO)

urethane (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA integration (IEA)

Molecular Function

nucleic acid binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Gin1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	105,740,914 - 105,762,357 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	105,742,094 - 105,762,357 (-)	Ensembl				GRCr8
mRatBN7.2	9	98,293,596 - 98,315,155 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	98,293,597 - 98,315,848 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	106,708,493 - 106,728,718 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	111,836,476 - 111,856,701 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	110,179,867 - 110,200,092 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	111,200,285 - 111,220,738 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	111,199,141 - 111,220,693 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	110,750,567 - 110,770,987 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	97,070,918 - 97,091,577 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	95,736,354 - 95,756,618 (-)	NCBI		Celera
RGSC_v3.1	9	97,280,493 - 97,293,502 (-)	NCBI
Cytogenetic Map	9	q36	NCBI

GIN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	103,086,000 - 103,120,138 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	103,086,000 - 103,120,226 (-)	Ensembl			hg38	GRCh38
GRCh37	5	102,421,704 - 102,455,842 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	102,449,603 - 102,483,741 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	98,369,538 - 98,403,680 (-)	NCBI		Celera
Cytogenetic Map	5	q21.1	NCBI
HuRef	5	97,602,973 - 97,637,114 (-)	NCBI		HuRef
CHM1_1	5	101,854,334 - 101,888,476 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	103,594,035 - 103,628,240 (-)	NCBI		T2T-CHM13v2.0

Gin1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	97,697,894 - 97,721,435 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	97,697,897 - 97,721,434 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	97,770,172 - 97,793,710 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	97,770,172 - 97,793,709 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	99,666,756 - 99,689,548 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	99,600,606 - 99,623,375 (+)	NCBI		MGSCv36	mm8
Celera	1	100,649,677 - 100,673,455 (+)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	47.76	NCBI

Gin1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	10,898,293 - 10,918,544 (+)	Ensembl
ChiLan1.0	NW_004955418	10,898,069 - 10,918,460 (+)	NCBI	ChiLan1.0	ChiLan1.0

GIN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	98,363,395 - 98,404,407 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	96,364,376 - 96,690,507 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	98,440,271 - 98,475,300 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	104,143,456 - 104,175,826 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	104,124,849 - 104,175,826 (-)	Ensembl			panPan2	panpan1.1

GIN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	8,088,719 - 8,116,461 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	8,088,515 - 8,116,436 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	9,490,244 - 9,518,001 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	7,976,941 - 8,004,710 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	7,977,034 - 8,004,701 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	7,917,409 - 7,945,154 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	7,936,158 - 7,964,988 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	8,095,976 - 8,123,752 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	163,232,989 - 163,258,059 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936523	1,418,316 - 1,443,618 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936523	1,418,387 - 1,443,322 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GIN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	108,561,387 - 108,597,262 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	108,561,132 - 108,599,017 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	112,579,162 - 112,614,955 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GIN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	6,528,728 - 6,562,314 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	6,526,425 - 6,563,044 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666036	7,766,036 - 7,801,636 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gin1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624743	21,212,688 - 21,236,882 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gin1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	168,727,659 - 168,748,231 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gin1
220 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	79
Count of miRNA genes:	73
Interacting mature miRNAs:	74
Transcripts:	ENSRNOT00000016028
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	86720043	110356905	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	86720043	121768150	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	83161999	118999486	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	85262459	109044727	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	85262459	118999486	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat

Markers in Region

RH143019

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	98,314,374 - 98,314,520 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	111,219,984 - 111,220,129	NCBI	Rnor6.0
Rnor_5.0	9	110,770,234 - 110,770,379	UniSTS	Rnor5.0
RGSC_v3.4	9	97,090,910 - 97,091,055	UniSTS	RGSC3.4
Celera	9	95,755,951 - 95,756,096	UniSTS
RH 3.4 Map	9	818.49	UniSTS
Cytogenetic Map	9	q36	UniSTS

AW532587

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	98,317,204 - 98,317,362 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	111,222,813 - 111,222,970	NCBI	Rnor6.0
Rnor_5.0	9	110,773,063 - 110,773,220	UniSTS	Rnor5.0
RGSC_v3.4	9	97,093,739 - 97,093,896	UniSTS	RGSC3.4
Celera	9	95,758,343 - 95,758,500	UniSTS
RH 3.4 Map	9	818.49	UniSTS
Cytogenetic Map	9	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	91	59	6	355	191	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC082058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016028 ⟹ ENSRNOP00000016028

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	105,742,094 - 105,762,357 (-)	Ensembl
mRatBN7.2 Ensembl	9	98,294,776 - 98,315,042 (-)	Ensembl
Rnor_6.0 Ensembl	9	111,200,383 - 111,220,651 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	111,218,699 - 111,220,693 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077052

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	111,206,795 - 111,209,286 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087355 ⟹ ENSRNOP00000073007

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	105,742,094 - 105,757,930 (-)	Ensembl
mRatBN7.2 Ensembl	9	98,293,597 - 98,315,848 (-)	Ensembl
Rnor_6.0 Ensembl	9	111,199,141 - 111,213,098 (-)	Ensembl

RefSeq Acc Id:

NM_001025012 ⟹ NP_001020183

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	105,742,089 - 105,762,357 (-)	NCBI
mRatBN7.2	9	98,294,771 - 98,315,042 (-)	NCBI
Rnor_6.0	9	111,200,383 - 111,220,651 (-)	NCBI
Rnor_5.0	9	110,750,567 - 110,770,987 (-)	NCBI
RGSC_v3.4	9	97,070,918 - 97,091,577 (-)	RGD
Celera	9	95,736,354 - 95,756,618 (-)	RGD

Sequence:

show sequence

TGCATTTAGGACCACTTCGAAGCAGCAGTTGATGAACTACGTAAAACAATAAGTCATTATAAAG
TCCATACACTGGGAGGCTGAGGCAGGAGGATCACCATGAGTGTGAAGCCAGCCCCATCTACCTA
GTTCCAGGACAGCTTTGGCTACAGATACCCTGAAAAGGGACAGGGGGAAAAAAAGGTCACGATG
GTCCGTAGTGGGAAAAACGGTGACCTTCATCTTAAACAGATCGCGTACTATAAGCGCACAGGCG
AGTACCACCCGACCACACTGTCGAGTGAGAGAAGCGGCATCAGAAGGGCGGCTAAGAAATTTGT
CTTCAAAGAAAAAAAGCTGTTTTATGTTGGAAAAGACAGAAAACAAAATCGTTTGGTAGTTGTT
TCGGAAGAGGAAAAAAAGAAAGTGTTGAGAGAGTGCCATGAAAATGGCCCTGGTGTCCATCACG
GCATCTCCAGAACCCTCACTCTAGTGGAGTCCAGCTACTATTGGACATCCGTGACCAATGATGT
CAAGCAGTGGGTATATGCTTGTCAGCATTGCCAAGTAGCGAAAAGCACAGTTATCGTAGCACCA
CAGCAGCACCTTTCCGTGGTGGGAAACCCGTGGAGTGTAGTTACTGTTGATCTGATGGGACCTT
TCCATACAAGCAGCAGAAGTCATGTGTATGCTATGATCATGACAGACTTGTTCACAAAATGGGT
TATGATTTTGCCTTTATGTGATGTTTCAGCATCAGAAATTTCTAAAGCTATTATCAATATATTT
TTCCTATATGGACCTCCTCAGAAAATAATAATGGACCAAAGAGATGAATTCATTGATCAGATCA
ATGTAGAACTGTATAGATTATTTGGTGCAAAGGAGATTGTAATTTCTCAAGCGTCTGGAAGTGT
GAATCCATCTGAAAGCACGCCCAGCACGGTGAAAACATTCCTCTCCAAACACTGCGCCGAGCAC
CCCGAGACCTGGGACGAGGAGCTGCCAGCTCTCTCCTTTGCCTTCAACGTGACCCGCGTGGAGC
CTACTAAAAACTCGCCGTATTTCCAAATGTTCAACCGGAACCCTTGCTTGCTCGAGTGTCCTCA
TGAAGGGGGAGGCGAAGGCACAAGCGTGTTCGCCAGAATCGTGGCTGCGGTTAGAGAGGCTGAT
GGCGTGGTGGAGAACCAGACACCAGCAGCAGGCCAGATGGAGAGCAGCACTTCAGAGGAGCTGA
GTAAAAGCAAAGTTGCTAAGAAGAAACCAAAGCAGCTAAACCCCTTCCACTTGAAAGTGGGTCA
CGAGGTGTTAAGGCAGAGGAAGAACTGGTGGAAGGATGGCCGCTTCCAATCTGAGTGGGTTGGT
CCTTGTGTCATCGACTACATTACAGACAGCGGATGCGCTGTCCTCAGAGACAACACTGGAACCA
GACTCAAACGACCTATCAAAATGTCCCACCTCAGGCCTTACGTGAGAGAGCCAAGTGAGCAGGA
CAGTCTTTATCTCCTGCAAGGTTCCATAGTGGCGGATCACGACTACATTGGATTACCTGAAATC
CCAGTTGGAACATACCAGGCTAATATTCTGGTGGAAGATGCAACGATCGGGATTGTTGATAATG
AATTATTGATATCAAGCAAGGATCATGAACTCTTAGAATATAGAAATTCAAAAATCTCTGCGTT
GGTAGAAGACCACAGTTCTCTTGAGAAACAGACTTTCAGTCTACTGGATTCTTCAAATCAAGTT
CTTGAGTACCTCAGTTAGTGAATACCAGAATGAACTTCGAATGCTTGCATAGAATGTACATATT
TCTAGTTTGTAAGTATTTTATCTATTAAAATAGGTTGTATAGAAGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039083782 ⟹ XP_038939710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	105,740,914 - 105,757,837 (-)	NCBI
mRatBN7.2	9	98,293,596 - 98,313,538 (-)	NCBI

RefSeq Acc Id:

XM_039083784 ⟹ XP_038939712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	105,740,914 - 105,752,654 (-)	NCBI
mRatBN7.2	9	98,293,596 - 98,305,361 (-)	NCBI

RefSeq Acc Id:

XM_039083785 ⟹ XP_038939713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	105,740,914 - 105,752,737 (-)	NCBI
mRatBN7.2	9	98,293,596 - 98,305,422 (-)	NCBI

RefSeq Acc Id:

XM_063267333 ⟹ XP_063123403

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	105,740,914 - 105,754,794 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020183	(Get FASTA)	NCBI Sequence Viewer
	XP_038939710	(Get FASTA)	NCBI Sequence Viewer
	XP_038939712	(Get FASTA)	NCBI Sequence Viewer
	XP_038939713	(Get FASTA)	NCBI Sequence Viewer
	XP_063123403	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH82058	(Get FASTA)	NCBI Sequence Viewer
	EDL91856	(Get FASTA)	NCBI Sequence Viewer
	EDL91857	(Get FASTA)	NCBI Sequence Viewer
	EDL91858	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016028
	ENSRNOP00000016028.6
	ENSRNOP00000073007
GenBank Protein	Q66H30	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020183 ⟸ NM_001025012

- UniProtKB:

Q66H30 (UniProtKB/Swiss-Prot), A6JR80 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVRSGKNGDLHLKQIAYYKRTGEYHPTTLSSERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVV
VSEEEKKKVLRECHENGPGVHHGISRTLTLVESSYYWTSVTNDVKQWVYACQHCQVAKSTVIVA
PQQHLSVVGNPWSVVTVDLMGPFHTSSRSHVYAMIMTDLFTKWVMILPLCDVSASEISKAIINI
FFLYGPPQKIIMDQRDEFIDQINVELYRLFGAKEIVISQASGSVNPSESTPSTVKTFLSKHCAE
HPETWDEELPALSFAFNVTRVEPTKNSPYFQMFNRNPCLLECPHEGGGEGTSVFARIVAAVREA
DGVVENQTPAAGQMESSTSEELSKSKVAKKKPKQLNPFHLKVGHEVLRQRKNWWKDGRFQSEWV
GPCVIDYITDSGCAVLRDNTGTRLKRPIKMSHLRPYVREPSEQDSLYLLQGSIVADHDYIGLPE
IPVGTYQANILVEDATIGIVDNELLISSKDHELLEYRNSKISALVEDHSSLEKQTFSLLDSSNQ
VLEYLS

hide sequence

Ensembl Acc Id:

ENSRNOP00000016028 ⟸ ENSRNOT00000016028

Ensembl Acc Id:

ENSRNOP00000073007 ⟸ ENSRNOT00000087355

RefSeq Acc Id:	XP_038939710 ⟸ XM_039083782
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2R6L5 (UniProtKB/TrEMBL), A6JR80 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939713 ⟸ XM_039083785
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038939712 ⟸ XM_039083784
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063123403 ⟸ XM_063267333
- Peptide Label:	isoform X2

Protein Domains

Integrase catalytic

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66H30-F1-model_v2	AlphaFold	Q66H30	1-518	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696898

Promoter ID:

EPDNEW_R7421

Type:

initiation region

Name:

Gin1_1

Description:

gypsy retrotransposon integrase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	111,220,702 - 111,220,762	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307449	AgrOrtholog
BioCyc Gene	G2FUF-26582	BioCyc
Ensembl Genes	ENSRNOG00000011962	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000016028	ENTREZGENE
	ENSRNOT00000016028.8	UniProtKB/Swiss-Prot
	ENSRNOT00000087355	ENTREZGENE
Gene3D-CATH	1.10.340.70	UniProtKB/Swiss-Prot
	3.30.420.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7132420	IMAGE-MGC_LOAD
InterPro	Integrase_cat-core	UniProtKB/Swiss-Prot
	Integrase_H2C2	UniProtKB/Swiss-Prot
	Retrovirus_Pol_polyprotein	UniProtKB/Swiss-Prot
	RNaseH-like_sf	UniProtKB/Swiss-Prot
	RNaseH_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:316687	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:95212	IMAGE-MGC_LOAD
NCBI Gene	316687	ENTREZGENE
PANTHER	PROTEIN CBG26694	UniProtKB/Swiss-Prot
	PROTEIN NYNRIN-LIKE	UniProtKB/Swiss-Prot
Pfam	Integrase_H2C2	UniProtKB/Swiss-Prot
PhenoGen	Gin1	PhenoGen
PROSITE	INTEGRASE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000011962	RatGTEx
Superfamily-SCOP	SSF53098	UniProtKB/Swiss-Prot
UniProt	A0A8L2R6L5	ENTREZGENE, UniProtKB/TrEMBL
	A6JR80	ENTREZGENE, UniProtKB/TrEMBL
	GIN1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Gin1	gypsy retrotransposon integrase 1	RGD1307449	similar to RIKEN cDNA 4930429M06Rik	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1307449	similar to RIKEN cDNA 4930429M06Rik	RGD1307449_predicted	similar to RIKEN cDNA 4930429M06Rik (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1307449_predicted	similar to RIKEN cDNA 4930429M06Rik (predicted)	LOC316687_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC316687_predicted	similar to RIKEN cDNA 4930429M06Rik (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD