Nlrp5 (NLR family, pyrin domain containing 5) - Rat Genome Database

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Gene: Nlrp5 (NLR family, pyrin domain containing 5) Rattus norvegicus
Analyze
Symbol: Nlrp5
Name: NLR family, pyrin domain containing 5
RGD ID: 1307446
Description: Predicted to enable tubulin binding activity. Predicted to be involved in several processes, including cortical granule exocytosis; cytoskeleton organization; and positive regulation of embryonic development. Predicted to act upstream of or within several processes, including embryo implantation; regulation of RNA stability; and regulation of protein stability. Predicted to be located in several cellular components, including apical cortex; cortical granule; and ooplasm. Predicted to be part of subcortical maternal complex. Predicted to be active in several cellular components, including cell cortex; cytosol; and mitochondrion. Orthologous to human NLRP5 (NLR family pyrin domain containing 5); INTERACTS WITH 1,2-dimethylhydrazine; bisphenol A; DDT.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC308325; NACHT, leucine rich repeat and PYD containing 5; NACHT, LRR and PYD domains-containing protein 5; Nalp5
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,811,044 - 76,872,964 (-)NCBIGRCr8
mRatBN7.2167,778,037 - 67,810,941 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl167,777,948 - 68,023,736 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0171,452,184 - 71,490,915 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl171,453,798 - 71,486,790 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0172,846,717 - 72,878,799 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,212,857 - 66,246,286 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,296,338 - 66,584,794 (-)NCBI
Celera165,519,807 - 65,552,240 (-)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10433232   PMID:10754103   PMID:11062459   PMID:14670992   PMID:18057100   PMID:18068672   PMID:18804437   PMID:19376971   PMID:20830304   PMID:22166940  


Genomics

Comparative Map Data
Nlrp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,811,044 - 76,872,964 (-)NCBIGRCr8
mRatBN7.2167,778,037 - 67,810,941 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl167,777,948 - 68,023,736 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0171,452,184 - 71,490,915 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl171,453,798 - 71,486,790 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0172,846,717 - 72,878,799 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,212,857 - 66,246,286 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,296,338 - 66,584,794 (-)NCBI
Celera165,519,807 - 65,552,240 (-)NCBICelera
Cytogenetic Map1q12NCBI
NLRP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,999,726 - 56,061,810 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,999,726 - 56,061,810 (+)EnsemblGRCh38hg38GRCh38
GRCh371956,511,092 - 56,573,176 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361961,202,904 - 61,264,988 (+)NCBINCBI36Build 36hg18NCBI36
Build 341961,202,903 - 61,264,984NCBI
Celera1953,555,479 - 53,617,543 (+)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1952,821,949 - 52,884,428 (+)NCBIHuRef
CHM1_11956,504,661 - 56,566,808 (+)NCBICHM1_1
T2T-CHM13v2.01959,098,923 - 59,161,007 (+)NCBIT2T-CHM13v2.0
Nlrp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39723,085,314 - 23,141,348 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl723,085,314 - 23,141,347 (+)EnsemblGRCm39 Ensembl
GRCm38723,385,889 - 23,441,923 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl723,385,889 - 23,441,922 (+)EnsemblGRCm38mm10GRCm38
MGSCv37724,170,916 - 24,226,940 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36723,094,657 - 23,150,681 (+)NCBIMGSCv36mm8
Celera718,067,211 - 18,125,836 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map710.22NCBI
NLRP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22062,282,978 - 62,346,665 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11964,073,038 - 64,136,776 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01953,021,034 - 53,083,590 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11961,818,345 - 61,879,623 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1961,818,345 - 61,879,538 (+)Ensemblpanpan1.1panPan2
NLRP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11101,813,449 - 101,842,643 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1101,813,449 - 101,842,633 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1101,999,948 - 102,029,018 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01102,460,071 - 102,498,949 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1102,459,949 - 102,489,156 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,098,621 - 102,137,465 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01101,816,356 - 101,855,182 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01102,573,033 - 102,611,882 (-)NCBIUU_Cfam_GSD_1.0
Nlrp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494718,958,071 - 18,980,966 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365621,069,745 - 1,092,383 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NLRP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl660,379,623 - 60,409,465 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1660,375,670 - 60,418,908 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2655,531,230 - 55,564,450 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NLRP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1648,589,792 - 48,653,181 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl648,600,935 - 48,652,860 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660451,271,216 - 1,364,141 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Nlrp5
278 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:27
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000041542
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4
Low 1 2 10
Below cutoff 1 7 16 3 11 3 3 3 7 7 14 7 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000041542   ⟹   ENSRNOP00000043888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl167,777,948 - 67,810,946 (-)Ensembl
Rnor_6.0 Ensembl171,453,798 - 71,486,790 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097841   ⟹   ENSRNOP00000089713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl167,777,948 - 68,023,736 (-)Ensembl
RefSeq Acc Id: XM_063280572   ⟹   XP_063136642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8176,811,044 - 76,872,964 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063136642 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL83172 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000043888.3
  ENSRNOP00000089713.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000043888   ⟸   ENSRNOT00000041542
RefSeq Acc Id: ENSRNOP00000089713   ⟸   ENSRNOT00000097841
RefSeq Acc Id: XP_063136642   ⟸   XM_063280572
Protein Domains
NACHT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZDM5-F1-model_v2 AlphaFold D3ZDM5 1-880 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307446 AgrOrtholog
BioCyc Gene G2FUF-60917 BioCyc
Ensembl Genes ENSRNOG00000022994 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041542.5 UniProtKB/TrEMBL
  ENSRNOT00000097841.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  NACHT_NTPase UniProtKB/TrEMBL
  NLRC_HD2 UniProtKB/TrEMBL
  NOD2_WH UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:308325 UniProtKB/TrEMBL
NCBI Gene 308325 ENTREZGENE
PANTHER NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 UniProtKB/TrEMBL
  NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 5 UniProtKB/TrEMBL
Pfam LRR_6 UniProtKB/TrEMBL
  NACHT UniProtKB/TrEMBL
  NLRC4_HD2 UniProtKB/TrEMBL
  NOD2_WH UniProtKB/TrEMBL
PhenoGen Nlrp5 PhenoGen
PROSITE NACHT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022994 RatGTEx
SMART LRR_RI UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6ALL1_RAT UniProtKB/TrEMBL
  A6KS81_RAT UniProtKB/TrEMBL
  D3ZDM5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Nlrp5  NLR family, pyrin domain containing 5  Nalp5  NACHT, leucine rich repeat and PYD containing 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Nalp5  NACHT, leucine rich repeat and PYD containing 5   Nalp5_predicted  NACHT, leucine rich repeat and PYD containing 5 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nalp5_predicted  NACHT, leucine rich repeat and PYD containing 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED