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Gene: Rbm20 (RNA binding motif protein 20) Rattus norvegicus

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Symbol:

Rbm20

Name:

RNA binding motif protein 20

RGD ID:

1307427

Description:

Enables pre-mRNA intronic binding activity. Involved in heart formation; negative regulation of mRNA splicing, via spliceosome; and regulation of alternative mRNA splicing, via spliceosome. Located in cytoplasmic ribonucleoprotein granule. Is active in nucleus. Human ortholog(s) of this gene implicated in dilated cardiomyopathy and dilated cardiomyopathy 1DD. Orthologous to human RBM20 (RNA binding motif protein 20); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC309544; probable RNA-binding protein 20; RNA-binding motif protein 20; RNA-binding protein 20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBM20 (RNA binding motif protein 20)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rbm20 (RNA binding motif protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbm20 (RNA binding motif protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBM20 (RNA binding motif protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBM20 (RNA binding motif protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbm20 (RNA binding motif protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBM20 (RNA binding motif protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBM20 (RNA binding motif protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbm20 (RNA binding motif protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rbm20 (RNA binding motif protein 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	KRTAP1-1 (keratin associated protein 1-1)	HGNC	OMA
Homo sapiens (human):	KRTAP1-5 (keratin associated protein 1-5)	HGNC	OMA
Homo sapiens (human):	KRTAP1-3 (keratin associated protein 1-3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RBM20 (RNA binding motif protein 20)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rbm20 (RNA binding motif protein 20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rbm20 (RNA binding motif protein 20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rbm20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rbm20	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Allele / Splice:

Rbm20^m1Mlgw ; Rbm20^em5Mcwi ; Rbm20^em10Mcwi ; Rbm20^em8Mcwi

Genetic Models:

(SDxF344)F1-Rbm20^m1Mlgw ; (SDxF344)F1xBN-Rbm20^m1Mlgw+/+ ; (SDxF344)F1-Rbm20^m1Mlgw+/+ ; (SDxF344)F1xBN-Rbm20^m1Mlgw ; SS-Rbm20^em5Mcwi ; SS-Rbm20^em10Mcwi ; SS-Rbm20^em8Mcwi

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	262,671,311 - 262,912,551 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	262,688,978 - 262,891,364 (+)	Ensembl				GRCr8
mRatBN7.2	1	252,683,760 - 252,907,465 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	252,683,771 - 252,886,060 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	260,872,977 - 261,075,647 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	267,579,046 - 267,781,723 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	260,234,755 - 260,437,091 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	274,391,932 - 274,589,816 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	274,391,932 - 274,589,816 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	281,783,646 - 282,003,053 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	259,905,545 - 260,144,190 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	248,402,941 - 248,600,603 (+)	NCBI		Celera
RGSC_v3.1	1	260,300,378 - 260,352,579 (+)	NCBI
Cytogenetic Map	1	q55	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

arrhythmogenic right ventricular cardiomyopathy (ISO)

atrial fibrillation (ISO,ISS)

cardiac arrest (ISO)

Cardiac Conduction Defect (ISO)

cardiomyopathy (ISO)

congestive heart failure (ISO)

dilated cardiomyopathy (ISO)

dilated cardiomyopathy 1A (ISO)

dilated cardiomyopathy 1B (ISO)

dilated cardiomyopathy 1DD (ISO,ISS)

dilated cardiomyopathy 1S (ISO)

Dilated Cardiomyopathy with Left Ventricular Noncompaction (ISO)

familial hypertrophic cardiomyopathy (ISO)

Heart Block (ISO)

hypertrophic cardiomyopathy (ISO)

hypertrophic cardiomyopathy 1 (ISO)

long QT syndrome (ISO)

Ventricular Fibrillation, Paroxysmal Familial, 1 (ISO)

Ventricular Tachycardia (ISO)

Wolff-Parkinson-White syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,3-dinitrobenzene (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

amphetamine (EXP)

arotinoid acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

butanal (ISO)

cantharidin (ISO)

CGP 52608 (ISO)

CHIR 99021 (ISO)

chlorpyrifos (ISO)

cortisol (ISO)

decabromodiphenyl ether (EXP)

dichloroacetic acid (ISO)

dorsomorphin (ISO)

doxorubicin (EXP,ISO)

entinostat (ISO)

epoxiconazole (ISO)

fenvalerate (EXP)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

L-ascorbic acid (ISO)

L-ascorbic acid 2-phosphate (ISO)

mercury dibromide (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

methimazole (EXP)

methoxychlor (EXP)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

nickel atom (ISO)

okadaic acid (ISO)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (EXP)

permethrin (EXP)

phenylmercury acetate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

SB 431542 (ISO)

sulfadimethoxine (EXP)

sulforaphane (ISO)

tamoxifen (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

vorinostat (ISO)

XAV939 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

heart formation (IDA,IEA,IMP,ISO)

mRNA processing (IEA)

negative regulation of mRNA splicing, via spliceosome (IDA,IEA,IMP,ISO)

positive regulation of RNA splicing (IEA,ISO)

regulation of alternative mRNA splicing, via spliceosome (IDA,IMP)

regulation of mRNA splicing, via spliceosome (IEA,ISO)

regulation of RNA splicing (IBA,IMP)

RNA splicing (IEA)

spliceosome-depend formation of circular RNA (IEA,ISO)

Cellular Component

cytoplasmic ribonucleoprotein granule (IDA,IEA,ISO)

nucleus (IBA,IDA,IEA,ISO,ISS)

Molecular Function

metal ion binding (IEA)

mRNA binding (IBA)

nucleic acid binding (IEA)

pre-mRNA intronic binding (IDA,IEA,ISO)

protein binding (ISO)

RNA binding (IEA,ISO,ISS)

splicing factor binding (IEA,ISO,ISS)

zinc ion binding (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased aerobic running capacity (IMP)

References

References - curated

#	Reference Title	Reference Citation
1.	Mutations in ribonucleic acid binding protein gene cause familial dilated cardiomyopathy.	Brauch KM, etal., J Am Coll Cardiol. 2009 Sep 1;54(10):930-41. doi: 10.1016/j.jacc.2009.05.038.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	RBM20, a gene for hereditary cardiomyopathy, regulates titin splicing.	Guo W, etal., Nat Med. 2012 May;18(5):766-73. doi: 10.1038/nm.2693.
4.	Pathophysiological defects and transcriptional profiling in the RBM20-/- rat model.	Guo W, etal., PLoS One. 2013 Dec 19;8(12):e84281. doi: 10.1371/journal.pone.0084281. eCollection 2013.
5.	RBM20 and RBM24 cooperatively promote the expression of short enh splice variants.	Ito J, etal., FEBS Lett. 2016 Jul;590(14):2262-74. doi: 10.1002/1873-3468.12251. Epub 2016 Jul 4.
6.	Rbm20 regulates titin alternative splicing as a splicing repressor.	Li S, etal., Nucleic Acids Res. 2013 Feb 1;41(4):2659-72. doi: 10.1093/nar/gks1362. Epub 2013 Jan 9.
7.	RNA-binding protein RBM20 represses splicing to orchestrate cardiac pre-mRNA processing.	Maatz H, etal., J Clin Invest. 2014 Aug;124(8):3419-30. doi: 10.1172/JCI74523. Epub 2014 Jun 24.
8.	RBM20-Mediated Pre-mRNA Splicing Has Muscle-Specificity and Differential Hormonal Responses between Muscles and in Muscle Cell Cultures.	Maimaiti R, etal., Int J Mol Sci. 2021 Mar 13;22(6). pii: ijms22062928. doi: 10.3390/ijms22062928.
9.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
10.	GOA pipeline	RGD automated data pipeline
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	RBM20 phosphorylation and its role in nucleocytoplasmic transport and cardiac pathogenesis.	Zhang Y, etal., FASEB J. 2022 May;36(5):e22302. doi: 10.1096/fj.202101811RR.
14.	RBM20 is an essential factor for thyroid hormone-regulated titin isoform transition.	Zhu C, etal., J Mol Cell Biol. 2015 Feb;7(1):88-90. doi: 10.1093/jmcb/mjv002. Epub 2015 Jan 8.

Additional References at PubMed

PMID:28676430	PMID:29725258	PMID:30133019	PMID:31221019	PMID:31717392	PMID:35762193

Genomics

Comparative Map Data

Rbm20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	262,671,311 - 262,912,551 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	262,688,978 - 262,891,364 (+)	Ensembl				GRCr8
mRatBN7.2	1	252,683,760 - 252,907,465 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	252,683,771 - 252,886,060 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	260,872,977 - 261,075,647 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	267,579,046 - 267,781,723 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	260,234,755 - 260,437,091 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	274,391,932 - 274,589,816 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	274,391,932 - 274,589,816 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	281,783,646 - 282,003,053 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	259,905,545 - 260,144,190 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	248,402,941 - 248,600,603 (+)	NCBI		Celera
RGSC_v3.1	1	260,300,378 - 260,352,579 (+)	NCBI
Cytogenetic Map	1	q55	NCBI

RBM20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	110,643,245 - 110,839,468 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	110,643,948 - 110,839,471 (+)	Ensembl			hg38	GRCh38
GRCh37	10	112,404,094 - 112,599,226 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	112,394,203 - 112,589,217 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	10	106,135,726 - 106,330,820 (+)	NCBI		Celera
Cytogenetic Map	10	q25.2	NCBI
HuRef	10	106,033,283 - 106,228,064 (+)	NCBI		HuRef
CHM1_1	10	112,685,947 - 112,881,061 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	111,526,746 - 111,723,237 (+)	NCBI		T2T-CHM13v2.0

Rbm20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	53,649,422 - 53,855,514 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	53,665,737 - 53,855,511 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	53,660,989 - 53,867,083 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	53,677,306 - 53,867,080 (+)	Ensembl			mm10	GRCm38
MGSCv37	19	53,751,796 - 53,941,570 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	53,730,363 - 53,919,025 (+)	NCBI		MGSCv36	mm8
MGSCv36	19	53,676,844 - 53,880,034 (+)	NCBI		MGSCv36	mm8
Celera	19	55,870,376 - 56,061,918 (+)	NCBI		Celera
Cytogenetic Map	19	D2	NCBI
cM Map	19	48.28	NCBI

Rbm20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955485	586,373 - 769,635 (-)	Ensembl
ChiLan1.0	NW_004955485	590,094 - 769,604 (-)	NCBI	ChiLan1.0	ChiLan1.0

RBM20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	122,528,458 - 122,721,290 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	122,533,794 - 122,726,626 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	107,240,854 - 107,433,749 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	110,767,653 - 110,882,909 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	110,822,255 - 110,882,909 (+)	Ensembl			panPan2	panpan1.1

RBM20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	21,971,424 - 22,162,798 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	21,971,504 - 22,161,476 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	22,243,625 - 22,314,911 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	22,616,330 - 22,687,337 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	22,496,586 - 22,687,315 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	22,175,756 - 22,246,804 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	22,182,299 - 22,253,611 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	22,316,433 - 22,387,379 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rbm20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	23,908,959 - 24,089,243 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	1,472,227 - 1,653,209 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	1,472,170 - 1,652,314 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	121,210,666 - 121,269,823 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	121,058,896 - 121,269,824 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	131,944,861 - 132,146,766 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	103,583,722 - 103,775,391 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	103,703,569 - 103,777,934 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	64,923,022 - 64,982,689 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	35,477,521 - 35,545,242 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624737	35,479,621 - 35,660,357 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rbm20
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	53,114,327 - 53,307,255 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	801
Count of miRNA genes:	329
Interacting mature miRNAs:	439
Transcripts:	ENSRNOT00000054685
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1578775	Iddm21	Insulin dependent diabetes mellitus QTL 21	4.13		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	245782829	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	248619887	269633915	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	247133834	270518180	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1600390	Niddm64	Non-insulin dependent diabetes mellitus QTL 64		0.003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	257624997	270518180	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	237995023	269633915	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
1598839	Rf56	Renal function QTL 56			renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	255849111	270518180	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	241569529	269633915	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	243953669	270518180	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat

Markers in Region

RH143918

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	252,683,081 - 252,683,263 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	274,391,254 - 274,391,435	NCBI	Rnor6.0
Rnor_5.0	1	281,800,803 - 281,800,984	UniSTS	Rnor5.0
RGSC_v3.4	1	259,904,867 - 259,905,048	UniSTS	RGSC3.4
Celera	1	248,402,213 - 248,402,394	UniSTS
RH 3.4 Map	1	1673.1	UniSTS
Cytogenetic Map	1	q55	UniSTS

RH141597

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	252,883,185 - 252,883,366 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	274,586,942 - 274,587,122	NCBI	Rnor6.0
Rnor_5.0	1	282,000,179 - 282,000,359	UniSTS	Rnor5.0
RGSC_v3.4	1	260,141,316 - 260,141,496	UniSTS	RGSC3.4
Celera	1	248,597,729 - 248,597,909	UniSTS
RH 3.4 Map	1	1665.2	UniSTS
Cytogenetic Map	1	q55	UniSTS

Genetic Models

This gene Rbm20 is modified in the following models/strains:

(SDxF344)F1-Rbm20^m1Mlgw (SDxF344)F1xBN-Rbm20^m1Mlgw+/+ (SDxF344)F1-Rbm20^m1Mlgw+/+ (SDxF344)F1xBN-Rbm20^m1Mlgw SS-Rbm20^em5Mcwi SS-Rbm20^em10Mcwi SS-Rbm20^em8Mcwi

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	65	160	89	88	57	91	57	6	351	189	11	138	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC110709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU562301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000054685 ⟹ ENSRNOP00000051570

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	262,688,978 - 262,891,364 (+)	Ensembl
mRatBN7.2 Ensembl	1	252,683,771 - 252,886,060 (+)	Ensembl
Rnor_6.0 Ensembl	1	274,391,932 - 274,589,816 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110758 ⟹ ENSRNOP00000096791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	252,834,919 - 252,886,060 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113904 ⟹ ENSRNOP00000091922

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	262,820,065 - 262,891,364 (+)	Ensembl
mRatBN7.2 Ensembl	1	252,814,422 - 252,886,060 (+)	Ensembl

RefSeq Acc Id:

NM_001107611 ⟹ NP_001101081

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	262,689,075 - 262,891,364 (+)	NCBI
mRatBN7.2	1	252,683,760 - 252,886,060 (+)	NCBI
Rnor_6.0	1	274,391,932 - 274,589,816 (+)	NCBI
Rnor_5.0	1	281,783,646 - 282,003,053 (+)	NCBI
RGSC_v3.4	1	259,905,545 - 260,144,190 (+)	RGD
Celera	1	248,402,941 - 248,600,603 (+)	RGD

Sequence:

show sequence

AAGGGGACTGGGTACAGGGACCCCGGCCAGTGAGCGCCTGTGTTCCGGGACCGCCCCTCCCTCG
CGCTCTTTCGCTGCGAGCCCGGGTCGGTGTCGCCGCGCATGGTGCTGGCTGCAGCCATGAGCCA
AGACGCGGATCCCAGCGGTCCGGAGCAACCCGACAGAGATGCCTGCATTGTGCCTGGTGTTCAA
GGGCCCCCTGCGCCCCAAGGCCAGCAAGGGATGCAGCCCCTGCCGCCACCGCTACCGCCACCGC
CTCAGCCTCAATCCAGCCTGCCCCAGATCATCCAAAATGCTGCCAAGCTCCTGGACAAGAACCC
TTTCTCCGTCAGTAGCCAGAACCCTCTGCTCACTTCGCCAGCCAGCGTCCAGCTGGCCCAGATA
CAGGCCCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAG
CCGCCACTGTCCTCAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCT
TCGCCATCCGTCTGTGCTTGGCACCACACATGGCCCTACTGGGGTCTCCCAGCATGCTGCCACC
GTTCCCAGTGCTCACTTTCCCTCAACTGCAATCGCCTTTTCGCCCCCAAGCCAGGCAGGAGGCC
CGGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTGCATACCTTCAGTGG
GGTGGTGCCTCAGACCCCTGCCCAGCCAGCAGTCATCCTAAGCATTGGGAAGGCGGGGCCGACA
CCTGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACCCTGGCCAGGCCTATGGTTCTGAAA
CGGAGGGCCAGCCGGGCTTCTTGCCAGCCTCGGCGTCAGCCGCAGCATCAGGCGGTGTGACCTA
TGAAGGACACTATAGCCACACAGGGCAGGATGGCCAAGCCACCTTTTCTAAAGACTTCTATGGA
CCCAGTGCCCAAGGGTCACATGCAGCAGGTGGGTTCCCAGCTGATCAGGCTGGGAGCATGAAAG
GAGACGTCGGTGGGTTGTTGCAAGGTACCAACAGCCAGTGGGAGAGGCCCTCTGGGTTCTCTGG
CCAGAACAAGGCCGATATTACAGCCGGGCCCGGTTTGTGGGCTCCACCTGCCAGTCAGCCTTAT
GAACTATATGATCCTGAGGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGATCTCGACTTA
ACAACAGCAAGCAGGGATTCAACTGCTCCTGCCGGCGGACAAAGGAGGGGCAGGCCATGCTGTC
CGTGAGGCCCCTGCAGGGTCATCAACTGAATGACTTCCGAGGCTTGGCTCCACTCCACCTTCCA
CATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACCTGAAGGACTGGGAGCTACATGTGAAGG
GGAAGTTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAGTGCTGGCCTCCGGAGTATATGTGC
TACAGGAGAAGGGACGCTGTCTGCCTCTGCAAACAGCACAGCTGTTTATAACCCCACTGGAAAT
GAGGATTATACCTCAACTCTTGGAACATCATATGCAGCCATTCCAACAAGGGCCTTTGCTCAAT
CAAACCCCATGTTTCCTTCGGCTTCCTCTGGGACAAATTTTGCACAGAGGAAAGGTGCTGGACG
AGTTGTGCACATCTGCAATCTCCCAGAGGGCAGCTGCACGGAGAATGACGTCATCAACCTGGGG
CTGCCCTTTGGCAAGGTCACTAATTACATCCTTATGAAGTCAACTAATCAGGCTTTCTTGGAGA
TGGCTTACACAGAAGCTGCTCAAGCTATGGTCCAGTACTACCAAGAAAAGCCCGCGCTTATCAA
TGGCGAGAAGTTACTCATTCGGATGTCCACGAGATACAAGGAATTGCAGCTGAAGAAACCTGGG
AAAAATGTGGCTGCTATCATCCAGGACATCCACTCCCAAAGGGAGAGGTGCATGCTCCGGGAAG
CTGACAGATATGGTCCAGAGCGACCACGTTCTCGAAGTCCAATGAGCCGATCGCTCTCCCCGAG
ATCCCACAGTCCTCCTGGCCCCTCTCGGGCTGATTGGGGCAATGGCCGTGACTCCTACGCATGG
AGGGACGAGGATCGGGAGACGGTGCCCAGGAGGGAGAACGGGGAAGACAAGAGGGACAGGTTGG
ATGTTTGGGCACATGACCGGAAACACTATCCCAGGCAGCTGGACAAAGCCGAGTTGGATGAGCG
ACTCGAAGGAGGGAGGGGCTACCGGGAAAAGTACTTGAAGTCAGGGTCCCCCGGCCCACTCCAT
TCTGCGTCTGGCTACAAAGGCCGGGAAGATGGCTACCATCGAAAAGAGACTAAAGCTAAGTTGG
ACAAACACCCAAAGCAGCAGCAGCAGGATGTGCCAGGAAGATCCAGGAGGAAAGAAGAGGCGCG
ACTACGGGAGCCCAGACACCCTCACCCAGAGGACTCTGGCAAGGAAGAGGATCTGGAGCCCAAG
GTCACTCGGGCCCCCGAGGGTACCAAGTCCAAGCAAAGTGAGAAAAGTAAAACCAAGAGAGCCG
ACAGAGACCAAGAAGGAGCTGATGACAAAAAAGAAGGCCGAGGGGCAGAGAATGAGGCTGGGAC
TGAGGAACAGGAAGGCATGGAAGAGAGCCCCGCATCGGTGGGCACACAGCAGGAAGGGACGGAG
TCCTCCGATCCAGAAAACACAAGGACAAAGAAGGGACAAGACTGTGACAGTGGAAGTGAGCCTG
AGGGGGACAACTGGTACCCCACCAACATGGAGGAGCTGGTCACAGTGGACGAAGTAGGGGAGGA
AGACTTCATCATGGAGCCAGACATACCGGAGCTGGAAGAAATTGTACCCATCGACCAGAAAGAC
AAAATCCTCCCCGAAATATGTCCCTGTGTAACAGCCACCTTAGGTTTGGACTTGGCCAAAGACT
TCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCCGAAGCTGCCCGGACA
AGTGCCGTCTACTTCCACAAGCTGTCCCAATGACACGGACATGGAGATGGCTGGCCTAAATCTG
GATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACCGGAGGTCTCAAATTGCTACG
AGAAGGAGGCGAGAGGAGCGGAGGGCTCAGATGTGCGTCTGGCCCCTGCAGCCCAGCGAATGTC
CTCCCCTCAGCCAGCAGATGAGAGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCC
AGGGGGTCCCCAGAAGATGGGCCTCATGAAGTCAGCCCCCTGGAAGAAAAAGCCAGCCCCACTA
CTGAAAGCGACCTCCAAAGCCAGGCTTGCCAAGAAAACTCCAGGTACACGGAGACGAGATCTCT
GAACTCGAGATCACCAGAATTCACCGAAGCGGAGCTGAAAGAGCCCCTTTCTTTGCCTTCCTGG
GAACCAGAGGTGTTCAGTGAACTTAGCATTCCTCTAGGAGTGGAGTTCGTGGTTCCCAGGACTG
GCTTTTACTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTG
CCGCAGCACTGTACACTACAGGAACTTACAGAAGTACCTGTCCCAGCTGGCAGAGGAGGGACTG
AAGGAGACAGAGGGGGTAGACAGCCCAAGCCCCGAGCGCAGCGGGATTGGTCCACACTTGGAAA
GGAAGAAGCTATGATACCGAGGCTGCCACCGTCTCTGGAAGGTGGATGGGAAGCCTGCTGAGCT
AAGGCCAGCCTGGTCTCAGGGACAGAACTGAGACCAGAGAAGAAGGAGAGCCAGGCAGGACATG
CTGCCGAGATGAGAAAAACACCTTGAAGCCTCTCCAGGAGCTGGCTCACCCTTCCGGGCCCAGC
CACCAAGGGTGACCAGCTTCCCATGGCCTCCTGATTCCTTTAGTCTGTTTTCCCTCTCTCCCTC
TCACTATCCCTTCTGTGCCAAAGTTTATTTCCTTTTCATAAAACCCAACTTCTCAGGGATTGTC
GCTGTGTTTCAAGTTTTGATTGGATGTGGTAGGTCCGTCAAGTGAGGCTGGGTCACACAAGAAA
AAAGTTTAATGGAAGGTCTGGGCTTAGAGTTATTTCAGTGAACCTGAGGTGGCCTTGGAACCTG
GCTTCTGTGCGTCCCAAGGGTAGGTAAGCTGTCAGGTTCTGCAACCAAGGAATCAGTTGGCAGA
GGTGGAAGTGGTTTCACTAAGGTTTCCTCTAGTCGGATCCTCGAAAAGGCTTCTTTTTTCTTTT
CAGTTTCTGGCTAGTGCTGGAAATGGAACCCAGAAGGTCGTACATTCTAAACAGGTGCTGTCCC
GATGAGCTGTCTGCCTAGCCAACATGTCCCAGGGACAGGGCTCACATAGTCCAGGGATTGCCTT
TAATTTCTTCTGAAGCCAAGGTTATCTTGAACTCCTCATCCTCCTGCTTCTACCAACTGAGTGC
TGTGATCCCAGGTATTGTGCCGGGAGGGGGGGGAACCCAGGGCTTCCAGCACAAGTGGCAAGCC
ATAGCCCTATTTGAGGAAGTCATTCATCCTCAGCTACTCTAGAAAACCACTGGGCTATGCCTTA
ATGTGCAATTGCACCGTATTATAGCAACAATGCATTATTGTACATCATTAGTATTTAAATTCAC
ATTCATTTTATGGAGTGAAGAAGAACCCTGTATTGAAGAAGCTCCAACAGATTCAATCCAAGCT
TCTTGGTTTAAGGATTATTCAGGATCTGTTCTATTCAGGACAGTGAATATGGTACATTGACTAA
GCTCGAGGTCAGCCATGTCTTCTCTCTAGAGGATTTACTCCCTCAAGGAGGCAATCAATGTAGG
CCTAACGAACATCACATGCTGACCACTGCCCTCTGCCCTCTGGCCTTCATTCATCCTTGGTGCC
TCTGCTTTGGGTTACTCGGTATTAGAACGATTTGAAAATGCTCTCCCGTCAGAGGAGAAACCAA
GAGACGGAGGGGTTGCTTATGCCGACTTGGAGGTTAAAACGTTAGAAAGAGCAGGTCCCTGATT
CCCAGCAGGGTCAGCGCCCCCTCCCATACGGGCTGAAGGATTGTAGGGGAAGGTCTTGGGACAA
AGGTACCGGAAGGCATGAGTACCACTAGAGCCATAGAGCGGATCCCCGAATCAGAAAGCCTGGC
GCTGTCTTCACGGGTAGGCATGCCTCCTTGAAGGCTCCCCCAAACCCCCCGTCCATGTGGATGG
TTTGCTTGTGTGAGTTTCCTGTTTATGTTCCCAAGCAAAGGAAGGCAGAGCAGACAGGGAGCAC
GTCTATTTGCTCCCCCCCCCCTTATACTGACATTCTACATTCTCCACCAACAGAAGGGCTGTGG
AGAAATGATTTAGTTCAGTGCTAACATTTTATCATCGGGGAAACTGAGGCACAGAAAGGAGACA
GGCGTAGAACCTAAAATAACCATGTGTCCACTTGGAGGCCTGTGGCTCCTGGGCAGGAGTGAAA
GAACTTCTGGGATCTGTGAAAGAGGAGTTAGACAGAGAGAGGCCAGTCTGGAAAGGAGTGATAG
GAAGTTGGGGCTTCGGGAAGGTGATATCCATCCCCTGGTGGATCCCAGAGGAGGTAACCTAGCG
TCATGGTCATGAGCAAAGTCTCTGCTATTTCTCAGAAAACCTTTGACCTCTGGGAACAGCTGCT
GCCCACATCCCTACACCCATCAGCACCCCCATCAGAGGCTGGACATGATTTCTCTTCCAGCAGA
GTGAGGCAGACCTCCCAACAGCACTGGCTCCCCTGCTAGTGGCCTTTCTAAGGGAAGCCACATG
GCCCAGCTCTCAGCAGCGGGATGGCTCCCTTGGCTATACATTGACCATCATATAAATATCAGCA
AAACTGAAGGGTTAAAGAAACAGCAGTCTCTATGTTTAAAGTCATGGATGGTCCTATACATGTG
TGTGTATATATACGTATATATTTTTATATAATTCCATTGGCATGGTTCTTGCATTTTTTAAAAA
TTCCTGTGTGTGTTCCATGCATCACAGTATTAAAGACAACCAGGAAGATATTTATTTCTTTTTT
TATTTTATTTTATTTTATTTTATTTTATTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGG
GCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTCTTTTTTTAAA
ACATTAATTCAGTGTCTCGTCAATCATTACAAAACGTCTCTCCCCAAGGTTGCTCATAAACAGT
TGCTACCTTGTATAAAAAATTCATTTGTGCCCTGGGTTAATGTGTCAGCAAGCCAGTGTCCTTG
AGTACTCACTGTTGGTACCTGATGGTCCTCCAGGTGGCACACCCAGAGGCTGTAGTGAACCTGT
TGGGTGAGCAGCAGCCATTAGCGTTCAGGTTTCCCATTCTTGGACAGTCCGAGGCGGTGATCTG
TAAGGTTATGCTTGAACTGGACCAGAGTTCCTTTGTTTCTGTGAGATTTTGAAAAACAGAACTA
TCAGTTAAGTTTGAACTTGTAAAGTATTAGAGTATTTTGAGTGTCTTATATAAATTGTCACCAC
TTTTTCTGATCTATATAATTGACCTAAAGTGTTTGTTTTTACAAAAGGAAAAAAATGGTTTTTA
ATAAAGAGAATTTGAAAGCTTGTGAG

hide sequence

RefSeq Acc Id:

XM_017589306 ⟹ XP_017444795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	262,818,559 - 262,882,894 (+)	NCBI
mRatBN7.2	1	252,813,348 - 252,886,059 (+)	NCBI
Rnor_6.0	1	274,515,780 - 274,587,161 (+)	NCBI

Sequence:

show sequence

CAGAGCTCTTAACAACTGAGCTACCCTCTAACCCTTAGGACACATTTAAATATCTACATTGTGT
CCTGAAATTCCTGTGGATGTTACACTCGTGTGTCTTGAACAGCAGGACCTTGGAAACTTGCTGG
AGGACTGGCAGCAAGTAGGTGATGAGAGCAGCCGAGCCTTTATCTTACATCATACGATAACAAT
GTATAATTATCCTTGCTGGTCCTCAGCTTGCTGCATCTAATGGCTACAGCTGTGATAGGTCTCT
ATCAGCTTTGTTCTTTGTTACACTGGTGCATTCAATGCTCTCTCCCACTCACCAAGGATTGCTA
AAGCGTCCACTGCAGGACATGGCCCCAGGGCTGAAGGTGAAATTATCCCCTTCTATCATGGCAG
CTAGAGAGACCCATAATGTCCTAGTGAGTAGCACTATTTATTTGGGGCAGATGGCCAGGGATGT
AGGTCGTGGTAAAGCACTTGCTTAATGTCAAGAGTGGCCCTAGTTTCCTAAGACACAGCAAGAG
GGAATATATGAAGTCAGAAGCATGGTGTCTTTGCATATCCATCTTCCATATTCTCCACTCTTCT
CTCCTCTTTGAATGGCACAGCACTGTTACTCAATGTCACGTTGGCTGAATTTCAGTTTGTGACG
CTACCTGGACCATACAATAGGAAAACTCTTTGAAACTGTGAAATTTCCTCTCCTAGGACTCACA
CTCCAGGACATAGGTCAGGACAGCCTTTGATATCTACATTGTGTCAAGGTCACATTAAGTATCA
CAATGTGGCACTCACTGTAGCAGATACAGCACTGTCCTGGGATGAACCGTCTTCATGATCCTGG
AGTGGGGCCTCCTTCCCTTGGCCTGTTGTTAGTCAGCTCCAGTGACTTCTCTGAAAAGTCTCCT
TAATGACAGAGGGAGGACAAAGCCTCCTGCTCAAGGACATGAATAGTGTGGCATACTTTCTTGT
GAGAACCCCAGGGAAGGTGGGAAGGAGGAAGTGTGAGGTCATCATTCTGAGTCTTATGCTTTGG
TAAACCTAAGTCAGTAAAGGACCTGAGTCCTGAGCCAAGATGCAAAGATGTGGCCGGTGCTCGG
GGGTCAGGGTCTGGGACTGGTGTCCTTAGGTATCTGGGGCTGAGAGATACGCAGGCCTGGGGCA
GTCCATGAGCTGGGGCTATCCTGGAAAGAGGTTCTCCCAGGCTCTCCGGGGAGCTCAAAGGTAG
CAGGTGGTCAGTGAGTGGGGAGGAGTGGTGGTGGTAGGGGTTCTGGTGTGCAGCTGGGTACAAG
CTGTCCAGATACATAGGGCTGGCTTTTACTTCATTTTTGTCAGCCTTTGAAGTATCACCAGGTG
GGTCCAATCCACTCCTGGCAGCAGGGTAAACCCCTGTTGTCGACGCCCCCAGGGTTAGTAAAGA
CAGGAGACTATCTTCCTCATTACCCCCCACCAAGGGTCTAAGAAAATGAGAGTCAGTCAACGCC
CACCATGTGTGAGCTCTCTGAGAGGTTTTGATCTAAGAAAGCGTTTTCCGCTGCTCGCTTTGGA
AGGGGATTATAGTGAATGGATGCTGGATCACACGGCTGGACGGCAGGCCAACTGGAATGCTGGC
TTTATCTCACCTGACAGTACAGCAGCAGGTTCTGATTCCACAAGTCACTCAGAAGTGTAGTTTG
GTTCGACGGTTTAAATGTGAGCTTTTTGAAGGAGAAATTAAAATTGGCAAGAGAAACTGGTTTC
TGGAAAGCAGAGCAGGCTTAGGGGTAATTAAATCGCAGGGAGGGAAGAGCAGCCCTCTGGCTGT
CATGTGGGTCTTACTGCCGTCTTCCCGGGAGGGCCTTCGGGAGCTTTGGGGGGGTGAGTTGTAT
CTTCTGCACGGAAGTTTTCAGAGACCTTAGTCTCCTCAGCACCAGCACTGTTCATACTTGCACA
TCCCTGGTCTCTGCCCCAGTGGACGCCACTTGCCACTTTTGCTCCCAGTTCTGACAAACAAAAT
GTGTGTCTGGCATCTTTGTAGGAACGGGCAATGGAGAACCCATTTTCCCTGCTGGAGGTCCTTG
AGTTACTAGCACACAGGAAGTAGCGGGTCTCAGTGTCCTATCCAGTTCCACAGAACTTAGCAGC
CCAGAGCATGCAGGGTTGTTGGTCCTTGTGAGAGGGCCAAACTGTCACCAGTGTGAATCTAGAA
CTTATAAAAGTAGACAAAGAGAACAAAAGGAGTCGTCACCGGCCACGGCAGTGACAGCGATGGA
AAACGGGATGTGAACAAGGCCCAGAGGCTTTGGAATTTTCTTAAAAATGCAGGGCAGGATTAGC
CTAAGACCACCTCCTTCAGACGCAGTCTCAGGAGACCGCTGCACGGAGCTGGCCTGGGTGTTGC
TATGCGAAGAGGCTGAGAACACGAGGCATGAACGTAGACTGATATTGTTTGCCATTTACACTCA
GCATGTGTAATGCAGTAGGAATGGCTTCTCAGCGGCATGTGACTCTCCTTGCAGACGGTGGGCA
GTGCCCGGGACGCTCTTTCTCTTTCGCTGGTTCGCTCGCTCATATCCCCCACCCCCACCCCCAA
TTCTGCCCCTTCCCAGACTCCTGAGCACTCGAGTGGATGGAGGCTTGTCATGATTGGCACGCAG
AAAGCCGGTAGAATGTTGTTGGAATTTTCTAGGGCGGTACATGTGCGACACCCAAAATGACTCC
TAGCTTCGGTGGCCGCAGGTCAGCAGCCCTTCGTGCCAGGCGCCCTGGTCTGCTTCTGAAAGTG
CTGCCAAGCTCCTGGACAAGAACCCCTTCTCCGTCAGTAGCCAGAACCCTCTGCTCACTTCGCC
AGCCAGCGTCCAGCTGGCCCAGATACAGGCCCAGCTCACCCTCCATCGGCTGAAGATGGCACAG
ACCGCAGTCACCAACAACACTGCAGCCGCCACTGTCCTCAACCAAGTCCTCTCCAAAGTGGCCA
TGTCCCAGCCTCTCTTCAACCAGCTTCGCCATCCGTCTGTGCTTGGCACCACACATGGCCCTAC
TGGGGTCTCCCAGCATGCTGCCACCGTTCCCAGTGCTCACTTTCCCTCAACTGCAATCGCCTTT
TCGCCCCCAAGCCAGGCAGGAGGCCCGGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATG
CTATGGTAGTGCATACCTTCAGTGGGGTGGTGCCTCAGACCCCTGCCCAGCCAGCAGTCATCCT
AAGCATTGGGAAGGCGGGGCCAACACCTGCTACTACAGGGTTCTATGACTATGGCAAAGCCAAC
CCTGGCCAGGCCTATGGTTCTGAAACGGAGGGCCAGCCGGGCTTCTTGCCAGCCTCGGCGTCAG
CCGCAGCATCAGGCGGTGTGACCTATGAAGGACACTATAGCCACACAGGGCAGGATGGCCAAGC
CACCTTTTCTAAAGACTTCTATGGACCCAGTGCCCAAGGGTCACATGCAGCAGGTGGGTTCCCA
GCTGATCAGGCTGGGAGCATGAAAGGAGACGTCGGTGGGTTGTTGCAAGGTACCAACAGCCAGT
GGGAGAGGCCCTCTGGGTTCTCTGGCCAGAACAAGGCCGATATTACAGCCGGGCCCGGTTTGTG
GGCTCCACCTGCCAGTCAGCCTTATGAACTATATGATCCTGAGGAGCCTACCTCAGACAGGGCC
CCTCCTGCCTTTGGATCTCGACTTAACAACAGCAAGCAGGGATTCAACTGCTCCTGCCGGCGGA
CAAAGGAGGGGCAGGCCATGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAATGACTTCCG
AGGCTTGGCTCCACTCCACCTTCCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACCTG
AAGGACTGGGAGCTACATGTGAAGGGGAAGTTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAA
GTGCTGGCCTCCGGAGTATATGTGCTACAGGAGAAGGGACGCTGTCTGCCTCTGCAAACAGCAC
AGCTGTTTATAACCCCACTGGAAATGAGGATTATACCTCAACTCTTGGAACATCATATGCAGCC
ATTCCAACAAGGGCCTTTGCTCAATCAAACCCCATGTTTCCTTCGGCTTCCTCTGGGACAAATT
TTGCACAGAGGAAAGGTGCTGGACGAGTTGTGCACATCTGCAATCTCCCAGAGGGCAGCTGCAC
GGAGAATGACGTCATCAACCTGGGGCTGCCCTTTGGCAAGGTCACTAATTACATCCTTATGAAG
TCAACTAATCAGGCTTTCTTGGAGATGGCTTACACAGAAGCTGCTCAAGCTATGGTCCAGTACT
ACCAAGAAAAGCCCGCGCTTATCAATGGCGAGAAGTTACTCATTCGGATGTCCACGAGATACAA
GGAATTGCAGCTGAAGAAACCTGGGAAAAATGTGGCTGCTATCATCCAGGACATCCACTCCCAA
AGGGAGAGGTGCATGCTCCGGGAAGCTGACAGATATGGTCCAGAGCGACCACGTTCTCGAAGTC
CAATGAGCCGATCGCTCTCCCCGAGATCCCACAGTCCTCCTGGCCCCTCTCGGGCTGATTGGGG
CAATGGCCGTGACTCCTACGCATGGAGGGACGAGGATCGGGAGACGGTGCCCAGGAGGGAGAAC
GGGGAAGACAAGAGGGACAGGTTGGATGTTTGGGCACATGACCGGAAACACTATCCCAGGCAGC
TGGACAAAGCCGAGTTGGATGAGCGACTCGAAGGAGGGAGGGGCTACCGGGAAAAGTACTTGAA
GTCAGGGTCCCCCGGCCCACTCCATTCTGCGTCTGGCTACAAAGGCCGGGAAGATGGCTACCAT
CGAAAAGAGACTAAAGCTAAGTTGGACAAACACCCAAAGCAGCAGCAGCAGGATGTGCCAGGAA
GATCCAGGAGGAAAGAAGAGGCGCGACTACGGGAGCCCAGACACCCTCACCCAGAGGACTCTGG
CAAGGAAGAGGATCTGGAGCCCAAGGTCACTCGGGCCCCCGAGGGTACCAAGTCCAAGCAAAGT
GAGAAAAGTAAAACCAAGAGAGCCGACAGAGACCAAGAAGGAGCTGATGACAAAAAAGAAGGCC
GAGGGGCAGAGAATGAGGCTGGGACTGAGGAACAGGAAGGCATGGAAGAGAGCCCCGCATCGGT
GGGCACACAGCAGGAAGGGACGGAGTCCTCCGATCCAGAAAACACAAGGACAAAGAAGGGACAA
GACTGTGACAGTGGAAGTGAGCCTGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGCTGG
TCACAGTGGACGAAGTAGGGGAGGAAGACTTCATCATGGAGCCAGACATACCGGAGCTGGAAGA
AATTGTACCCATCGACCAGAAAGACAAAATCCTCCCCGAAATATGTCCCTGTGTAACAGCCACC
TTAGGTTTGGACTTGGCCAAAGACTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAG
AACTCAGCCCGAAGCTGCCCGGACAAGTGCCGTCTACTTCCACAAGCTGTCCCAATGACACGGA
CATGGAGATGGCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTC
TCACCGGAGGTCTCAAATTGCTACGAGAAGGAGGCGAGAGGAGCGGAGGGCTCAGATGTGCGTC
TGGCCCCTGCAGCCCAGCGAATGTCCTCCCCTCAGCCAGCAGATGAGAGGGCCCAGCAGTCCAG
CCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGCCTCATGAAGTCAGCCCC
CTGGAAGAAAAAGCCAGCCCCACTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCAAGAAAACT
CCAGGTACACGGAGACGAGATCTCTGAACTCGAGATCACCAGAATTCACCGAAGCGGAGCTGAA
AGAGCCCCTTTCTTTGCCTTCCTGGGAACCAGAGGTGTTCAGTGAACTTAGCATTCCTCTAGGA
GTGGAGTTCGTGGTTCCCAGGACTGGCTTTTACTGCAAGCTGTGTGGCCTGTTCTACACAAGCG
AGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTACACTACAGGAACTTACAGAAGTACCT
GTCCCAGCTGGCAGAGGAGGGACTGAAGGAGACAGAGGGGGTAGACAGCCCAAGCCCCGAGCGC
AGCGGGATTGGTCCACACTTGGAAAGGAAGAAGCTATGATACCGAGGCTGCCACCGTCTCTGGA
AGGTGGATGGGAAGCCTGCTGAGCTAAGGCCAGCCTGGTCTCAGGGACAGAACTGAGACCAGAG
AAGAAGGAGAGCCAGGCAGGACATGCTGCCGAGATGAGAAAAACACCTTGAAGCCTCTCCAGGA
GCTGGCTCACCCTTCCGGGCCCAGCCACCAAGGGTGACCAGCTTCCCATGGCCTCCTGATTCCT
TTAGTCTGTTTTCCCTCTCTCCCTCTCACTATCCCTTCTGTGCCAAAGTTTATTTCCTTTTCAT
AAAACCCAACTTCTCAGGGA

hide sequence

RefSeq Acc Id:

XM_039080732 ⟹ XP_038936660

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	262,686,539 - 262,912,551 (+)	NCBI
mRatBN7.2	1	252,683,862 - 252,907,465 (+)	NCBI

RefSeq Acc Id:

XM_039080742 ⟹ XP_038936670

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	262,818,559 - 262,882,894 (+)	NCBI
mRatBN7.2	1	252,813,347 - 252,886,059 (+)	NCBI

RefSeq Acc Id:

XM_039080744 ⟹ XP_038936672

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	262,853,115 - 262,882,894 (+)	NCBI
mRatBN7.2	1	252,845,164 - 252,886,059 (+)	NCBI

RefSeq Acc Id:

XM_063265322 ⟹ XP_063121392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	262,686,534 - 262,882,894 (+)	NCBI

RefSeq Acc Id:

XM_063265325 ⟹ XP_063121395

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	262,769,766 - 262,882,894 (+)	NCBI

RefSeq Acc Id:

XM_063265327 ⟹ XP_063121397

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	262,671,311 - 262,882,894 (+)	NCBI

RefSeq Acc Id:

XM_063265334 ⟹ XP_063121404

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	262,848,503 - 262,882,894 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101081	(Get FASTA)	NCBI Sequence Viewer
	XP_017444795	(Get FASTA)	NCBI Sequence Viewer
	XP_038936660	(Get FASTA)	NCBI Sequence Viewer
	XP_038936670	(Get FASTA)	NCBI Sequence Viewer
	XP_038936672	(Get FASTA)	NCBI Sequence Viewer
	XP_063121392	(Get FASTA)	NCBI Sequence Viewer
	XP_063121395	(Get FASTA)	NCBI Sequence Viewer
	XP_063121397	(Get FASTA)	NCBI Sequence Viewer
	XP_063121404	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ACD80091	(Get FASTA)	NCBI Sequence Viewer
	E9PT37	(Get FASTA)	NCBI Sequence Viewer
	EDL94439	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051570
	ENSRNOP00000051570.2

RefSeq Acc Id:

NP_001101081 ⟸ NM_001107611

- UniProtKB:

C1IEE3 (UniProtKB/Swiss-Prot), E9PT37 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MVLAAAMSQDADPSGPEQPDRDACIVPGVQGPPAPQGQQGMQPLPPPLPPPPQPQSSLPQIIQN
AAKLLDKNPFSVSSQNPLLTSPASVQLAQIQAQLTLHRLKMAQTAVTNNTAAATVLNQVLSKVA
MSQPLFNQLRHPSVLGTTHGPTGVSQHAATVPSAHFPSTAIAFSPPSQAGGPGPSVSLPSQPPN
AMVVHTFSGVVPQTPAQPAVILSIGKAGPTPATTGFYDYGKANPGQAYGSETEGQPGFLPASAS
AAASGGVTYEGHYSHTGQDGQATFSKDFYGPSAQGSHAAGGFPADQAGSMKGDVGGLLQGTNSQ
WERPSGFSGQNKADITAGPGLWAPPASQPYELYDPEEPTSDRAPPAFGSRLNNSKQGFNCSCRR
TKEGQAMLSVRPLQGHQLNDFRGLAPLHLPHICSICDKKVFDLKDWELHVKGKLHAQKCLLFSE
SAGLRSICATGEGTLSASANSTAVYNPTGNEDYTSTLGTSYAAIPTRAFAQSNPMFPSASSGTN
FAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQY
YQEKPALINGEKLLIRMSTRYKELQLKKPGKNVAAIIQDIHSQRERCMLREADRYGPERPRSRS
PMSRSLSPRSHSPPGPSRADWGNGRDSYAWRDEDRETVPRRENGEDKRDRLDVWAHDRKHYPRQ
LDKAELDERLEGGRGYREKYLKSGSPGPLHSASGYKGREDGYHRKETKAKLDKHPKQQQQDVPG
RSRRKEEARLREPRHPHPEDSGKEEDLEPKVTRAPEGTKSKQSEKSKTKRADRDQEGADDKKEG
RGAENEAGTEEQEGMEESPASVGTQQEGTESSDPENTRTKKGQDCDSGSEPEGDNWYPTNMEEL
VTVDEVGEEDFIMEPDIPELEEIVPIDQKDKILPEICPCVTATLGLDLAKDFTKQGETLGNGDA
ELSPKLPGQVPSTSTSCPNDTDMEMAGLNLDAERKPAESETGLSPEVSNCYEKEARGAEGSDVR
LAPAAQRMSSPQPADERARQSSPFLDDCKARGSPEDGPHEVSPLEEKASPTTESDLQSQACQEN
SRYTETRSLNSRSPEFTEAELKEPLSLPSWEPEVFSELSIPLGVEFVVPRTGFYCKLCGLFYTS
EEAAKVSHCRSTVHYRNLQKYLSQLAEEGLKETEGVDSPSPERSGIGPHLERKKL

hide sequence

RefSeq Acc Id:	XP_017444795 ⟸ XM_017589306
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AGI3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQTAVTNNTAAATVLNQVLSKVAMSQPLFNQLRHPSVLGTTHGPTGVSQHAATVPSAHFPSTA IAFSPPSQAGGPGPSVSLPSQPPNAMVVHTFSGVVPQTPAQPAVILSIGKAGPTPATTGFYDYG KANPGQAYGSETEGQPGFLPASASAAASGGVTYEGHYSHTGQDGQATFSKDFYGPSAQGSHAAG GFPADQAGSMKGDVGGLLQGTNSQWERPSGFSGQNKADITAGPGLWAPPASQPYELYDPEEPTS DRAPPAFGSRLNNSKQGFNCSCRRTKEGQAMLSVRPLQGHQLNDFRGLAPLHLPHICSICDKKV FDLKDWELHVKGKLHAQKCLLFSESAGLRSICATGEGTLSASANSTAVYNPTGNEDYTSTLGTS YAAIPTRAFAQSNPMFPSASSGTNFAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI LMKSTNQAFLEMAYTEAAQAMVQYYQEKPALINGEKLLIRMSTRYKELQLKKPGKNVAAIIQDI HSQRERCMLREADRYGPERPRSRSPMSRSLSPRSHSPPGPSRADWGNGRDSYAWRDEDRETVPR RENGEDKRDRLDVWAHDRKHYPRQLDKAELDERLEGGRGYREKYLKSGSPGPLHSASGYKGRED GYHRKETKAKLDKHPKQQQQDVPGRSRRKEEARLREPRHPHPEDSGKEEDLEPKVTRAPEGTKS KQSEKSKTKRADRDQEGADDKKEGRGAENEAGTEEQEGMEESPASVGTQQEGTESSDPENTRTK KGQDCDSGSEPEGDNWYPTNMEELVTVDEVGEEDFIMEPDIPELEEIVPIDQKDKILPEICPCV TATLGLDLAKDFTKQGETLGNGDAELSPKLPGQVPSTSTSCPNDTDMEMAGLNLDAERKPAESE TGLSPEVSNCYEKEARGAEGSDVRLAPAAQRMSSPQPADERAQQSSPFLDDCKARGSPEDGPHE VSPLEEKASPTTESDLQSQACQENSRYTETRSLNSRSPEFTEAELKEPLSLPSWEPEVFSELSI PLGVEFVVPRTGFYCKLCGLFYTSEEAAKVSHCRSTVHYRNLQKYLSQLAEEGLKETEGVDSPS PERSGIGPHLERKKL hide sequence

Ensembl Acc Id:

ENSRNOP00000051570 ⟸ ENSRNOT00000054685

RefSeq Acc Id:	XP_038936660 ⟸ XM_039080732
- Peptide Label:	isoform X3
- UniProtKB:	E9PT37 (UniProtKB/Swiss-Prot), C1IEE3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038936670 ⟸ XM_039080742
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AGI3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936672 ⟸ XM_039080744
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000096791 ⟸ ENSRNOT00000110758

Ensembl Acc Id:

ENSRNOP00000091922 ⟸ ENSRNOT00000113904

RefSeq Acc Id:	XP_063121397 ⟸ XM_063265327
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AGI3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121392 ⟸ XM_063265322
- Peptide Label:	isoform X1
- UniProtKB:	E9PT37 (UniProtKB/Swiss-Prot), C1IEE3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063121395 ⟸ XM_063265325
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AGI3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121404 ⟸ XM_063265334
- Peptide Label:	isoform X4

Protein Domains

Matrin-type RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PT37-F1-model_v2	AlphaFold	E9PT37	1-1207	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307427	AgrOrtholog
BioCyc Gene	G2FUF-55380	BioCyc
Ensembl Genes	ENSRNOG00000014705	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000054685	ENTREZGENE
	ENSRNOT00000054685.3	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
InterPro	Matrin/U1-C_Znf_C2H2	UniProtKB/Swiss-Prot
	Matrin/U1-like-C_Znf_C2H2	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RBM20_RRM	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:309544	UniProtKB/Swiss-Prot
NCBI Gene	309544	ENTREZGENE
PANTHER	MATRIN 3/NUCLEAR PROTEIN 220-RELATED	UniProtKB/Swiss-Prot
PhenoGen	Rbm20	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot
	ZF_MATRIN	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000014705	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot
	ZnF_U1	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	A0A8I6AGI3	ENTREZGENE, UniProtKB/TrEMBL
	C1IEE3	ENTREZGENE
	E9PT37	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	C1IEE3	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Rbm20	RNA binding motif protein 20	Rbm20_predicted	RNA binding motif protein 20 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Rbm20_predicted	RNA binding motif protein 20 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Mammalian Phenotype

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Imported Disease Annotations - OMIM

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